Wall clock time and date at job start Tue Mar 31 2020 08:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47423 * 2 1 4 4 C 1.46899 * 110.99859 * 199.52404 * 3 2 1 5 5 C 1.50694 * 109.47322 * 66.04262 * 4 3 2 6 6 H 1.07994 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99788 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47392 * 90.00054 * 9 7 5 11 11 H 1.48502 * 109.47155 * 209.99981 * 9 7 5 12 12 H 1.48504 * 109.47261 * 329.99859 * 9 7 5 13 13 C 1.38440 * 110.99996 * 75.56556 * 3 2 1 14 14 N 1.31951 * 120.14558 * 58.96923 * 13 3 2 15 15 C 1.32658 * 122.63915 * 180.02562 * 14 13 3 16 16 C 1.36065 * 121.98951 * 359.97438 * 15 14 13 17 17 C 1.40842 * 118.85552 * 0.02562 * 16 15 14 18 18 C 1.40284 * 122.16969 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 120.27405 * 0.02562 * 18 17 16 20 20 C 1.36387 * 119.45137 * 180.02562 * 18 17 16 21 21 C 1.39269 * 120.96038 * 359.95126 * 20 18 17 22 22 C 1.36295 * 121.05560 * 0.02562 * 21 20 18 23 23 C 1.40098 * 119.56685 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46917 * 64.86316 * 1 2 3 25 25 H 1.09000 * 109.47146 * 184.87249 * 1 2 3 26 26 H 1.09009 * 109.46958 * 304.87141 * 1 2 3 27 27 H 1.08997 * 109.46941 * 239.99172 * 2 1 3 28 28 H 1.09009 * 109.46879 * 119.99651 * 2 1 3 29 29 H 1.09005 * 109.46755 * 186.04658 * 4 3 2 30 30 H 1.09003 * 109.47075 * 306.04134 * 4 3 2 31 31 H 0.97000 * 119.99949 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.00137 * 179.97438 * 15 14 13 33 33 H 1.07996 * 120.57769 * 179.97438 * 16 15 14 34 34 H 1.08005 * 119.52194 * 179.97438 * 20 18 17 35 35 H 1.08006 * 119.47100 * 180.02562 * 21 20 18 36 36 H 1.08000 * 120.21777 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4503 -0.4583 5 6 3.4857 1.0446 -1.9079 6 1 2.5858 0.7656 -2.4357 7 6 4.7004 1.0295 -2.5602 8 7 5.7962 1.3688 -1.9172 9 14 4.7893 0.5273 -4.3572 10 1 4.6242 1.7278 -5.2155 11 1 6.1072 -0.0997 -4.6313 12 1 3.7071 -0.4456 -4.6534 13 6 1.8814 1.9601 1.2516 14 7 2.4753 1.4195 2.2986 15 6 2.3758 1.9286 3.5196 16 6 1.6500 3.0506 3.7759 17 6 0.9849 3.6880 2.7105 18 6 0.2184 4.8482 2.8957 19 17 0.0617 5.5507 4.4755 20 6 -0.4028 5.4196 1.8244 21 6 -0.2859 4.8687 0.5506 22 6 0.4515 3.7426 0.3366 23 6 1.1037 3.1283 1.4136 24 1 -0.3633 0.4365 -0.9303 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5876 0.8432 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7854 2.4691 -0.3473 30 1 4.0248 0.7736 0.1391 31 1 6.6507 1.3585 -2.3762 32 1 2.8864 1.4376 4.3348 33 1 1.5842 3.4451 4.7790 34 1 -0.9936 6.3126 1.9657 35 1 -0.7878 5.3413 -0.2808 36 1 0.5332 3.3271 -0.6570 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:26 Heat of formation + Delta-G solvation = 39.077554 kcal Electronic energy + Delta-G solvation = -20558.024814 eV Core-core repulsion = 17453.325021 eV Total energy + Delta-G solvation = -3104.699793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.06687 -39.27154 -37.78005 -37.40050 -34.85039 -33.22176 -32.26980 -31.65076 -30.35609 -28.29997 -25.22115 -24.69528 -24.35026 -23.51517 -21.62469 -18.93215 -18.81866 -18.27910 -17.66474 -16.99532 -16.48078 -16.14073 -15.87771 -15.51661 -15.04535 -14.84416 -14.64494 -14.35848 -14.19120 -13.85752 -13.71135 -13.09444 -12.93000 -12.77888 -12.69124 -12.45896 -12.41976 -12.37389 -12.00969 -11.88013 -11.84262 -11.46708 -10.83942 -10.64594 -10.61486 -10.13994 -9.44691 -8.91639 -8.21342 -6.32973 -0.74031 -0.15460 0.76640 1.01120 1.43984 1.45651 1.56905 1.99867 2.39847 2.83682 2.95926 3.12629 3.53162 3.59397 3.81127 3.89107 3.99267 4.23730 4.28315 4.39065 4.44829 4.60082 4.71179 4.74239 4.77054 4.94426 5.01076 5.05746 5.12732 5.19541 5.22143 5.37440 5.41926 5.48627 5.67257 5.73836 6.00279 6.06049 6.62285 6.81176 6.99626 7.36715 8.90563 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.004445 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.478560 B = 6297.936585 C = 6452.111746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.058 3.942 3 N -0.486 5.486 4 C 0.228 3.772 5 C -0.522 4.522 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.975 3.025 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.342 3.658 14 N -0.553 5.553 15 C 0.083 3.917 16 C -0.167 4.167 17 C -0.028 4.028 18 C -0.052 4.052 19 Cl -0.051 7.051 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.065 4.065 23 C -0.100 4.100 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.026 0.974 29 H -0.009 1.009 30 H -0.031 1.031 31 H 0.265 0.735 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.079 7.094 9.060 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 N -0.210 5.210 4 C 0.103 3.897 5 C -0.560 4.560 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.577 5.577 9 Si 0.799 3.201 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.182 1.182 13 C 0.100 3.900 14 N -0.266 5.266 15 C -0.062 4.062 16 C -0.187 4.187 17 C -0.034 4.034 18 C -0.079 4.079 19 Cl -0.022 7.022 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.104 4.104 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.009 0.991 30 H -0.013 1.013 31 H 0.073 0.927 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.661 6.667 8.879 18.391 hybrid contribution 0.972 -0.066 0.196 0.994 sum -13.689 6.601 9.075 17.701 Atomic orbital electron populations 1.21657 0.93076 1.02046 1.01792 1.22095 0.96722 0.87036 1.00970 1.60170 1.23396 1.19896 1.17501 1.19260 0.81349 0.93975 0.95136 1.21398 0.94003 1.45183 0.95416 0.90701 1.25967 0.94963 0.95121 1.03496 1.70124 0.99257 1.49401 1.38876 0.85301 0.77602 0.78749 0.78479 1.19668 1.21169 1.18242 1.20498 0.89588 0.90866 0.89018 1.67673 1.21927 1.35744 1.01207 1.22436 0.96454 0.94093 0.93189 1.22041 0.99289 0.97172 1.00150 1.18061 0.97379 0.94942 0.93028 1.20536 1.02999 0.95938 0.88377 1.98349 1.96704 1.82678 1.24457 1.21304 0.96932 1.00046 0.90676 1.21251 0.98993 0.95312 0.97710 1.21311 0.93574 0.94947 0.98666 1.18717 1.00788 0.96517 0.94418 0.91395 0.90517 0.94270 0.90407 0.95511 0.99063 1.01338 0.92673 0.80949 0.81941 0.81298 0.81245 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 10.07 71.98 0.72 -3.26 16 2 C 0.06 2.37 5.49 86.30 0.47 2.84 16 3 N -0.49 -21.79 3.61 -704.93 -2.55 -24.34 16 4 C 0.23 12.59 4.53 85.56 0.39 12.97 16 5 C -0.52 -29.18 8.24 25.60 0.21 -28.97 16 6 H 0.07 3.98 7.31 -2.91 -0.02 3.96 16 7 C 0.00 0.15 5.46 84.66 0.46 0.62 16 8 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 9 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.34 14.25 4.59 133.92 0.61 14.86 16 14 N -0.55 -22.98 9.41 -193.31 -1.82 -24.80 16 15 C 0.08 2.73 11.06 84.06 0.93 3.66 16 16 C -0.17 -4.80 9.51 22.40 0.21 -4.59 16 17 C -0.03 -0.85 5.75 -21.28 -0.12 -0.98 16 18 C -0.05 -1.26 6.32 22.34 0.14 -1.12 16 19 Cl -0.05 -1.03 27.64 -2.72 -0.08 -1.11 16 20 C -0.07 -1.40 9.73 22.09 0.21 -1.19 16 21 C -0.11 -2.49 9.95 22.06 0.22 -2.27 16 22 C -0.07 -1.97 9.56 22.27 0.21 -1.76 16 23 C -0.10 -3.55 5.75 -21.22 -0.12 -3.68 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.23 7.60 -2.38 -0.02 1.21 16 27 H 0.08 3.35 6.58 -2.39 -0.02 3.34 16 28 H 0.03 1.13 7.42 -2.38 -0.02 1.12 16 29 H -0.01 -0.54 8.05 -2.38 -0.02 -0.56 16 30 H -0.03 -1.94 8.12 -2.39 -0.02 -1.96 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.16 3.66 7.12 -2.91 -0.02 3.64 16 34 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.14 4.50 7.61 -2.91 -0.02 4.48 16 Total: -1.00 -68.37 319.38 3.52 -64.85 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.09 Total: 9.51 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.56 Total: -12.88 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.08 Total: -105.98 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -68.37 3.52 -64.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.930 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds