Wall clock time and date at job start Tue Mar 31 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46726 * 2 1 4 4 C 1.46905 * 110.99395 * 160.32507 * 3 2 1 5 5 C 1.50699 * 109.47417 * 288.91959 * 4 3 2 6 6 H 1.07998 * 119.99611 * 2.67782 * 5 4 3 7 7 C 1.37876 * 120.00202 * 182.67792 * 5 4 3 8 8 N 1.31513 * 120.00041 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47042 * 59.99862 * 9 7 5 11 11 H 1.48496 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47250 * 299.99840 * 9 7 5 13 13 C 1.38418 * 111.00368 * 284.27800 * 3 2 1 14 14 N 1.31972 * 120.14276 * 303.67014 * 13 3 2 15 15 C 1.32652 * 122.63106 * 179.97438 * 14 13 3 16 16 C 1.36069 * 121.99434 * 0.02562 * 15 14 13 17 17 C 1.40863 * 118.85334 * 359.97231 * 16 15 14 18 18 C 1.40169 * 122.17174 * 180.02562 * 17 16 15 19 19 C 1.36310 * 119.50291 * 179.97438 * 18 17 16 20 20 C 1.39232 * 120.99275 * 359.97438 * 19 18 17 21 21 C 1.36442 * 121.02860 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.24699 * 180.02562 * 21 20 19 23 23 C 1.40191 * 119.50619 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.47211 * 176.25952 * 1 2 3 25 25 H 1.08999 * 109.47626 * 296.26224 * 1 2 3 26 26 H 1.09001 * 109.47181 * 56.26490 * 1 2 3 27 27 H 1.09003 * 109.47164 * 240.00208 * 2 1 3 28 28 H 1.09000 * 109.46820 * 120.00234 * 2 1 3 29 29 H 1.08994 * 109.47159 * 48.92522 * 4 3 2 30 30 H 1.08999 * 109.46603 * 168.92489 * 4 3 2 31 31 H 0.96995 * 119.99969 * 179.97438 * 8 7 5 32 32 H 1.08004 * 119.00134 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.57133 * 179.97438 * 16 15 14 34 34 H 1.07994 * 120.24625 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.49699 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.48565 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4126 1.4509 0.4618 5 6 3.4656 1.1669 1.9408 6 1 2.5612 0.9159 2.4751 7 6 4.6685 1.2275 2.6118 8 7 5.7698 1.5327 1.9611 9 14 4.7342 0.8748 4.4450 10 1 4.2496 -0.5054 4.7012 11 1 6.1337 1.0045 4.9242 12 1 3.8715 1.8443 5.1669 13 6 1.8844 1.9590 -1.2523 14 7 2.4380 1.3888 -2.3059 15 6 2.3394 1.8954 -3.5279 16 6 1.6566 3.0453 -3.7786 17 6 1.0363 3.7153 -2.7059 18 6 0.3152 4.9038 -2.8851 19 6 -0.2638 5.5065 -1.8083 20 6 -0.1503 4.9590 -0.5332 21 6 0.5442 3.8034 -0.3233 22 17 0.6723 3.1382 1.2751 23 6 1.1526 3.1567 -1.4082 24 1 -0.3634 -1.0255 -0.0670 25 1 -0.3634 0.4547 0.9216 26 1 -0.3633 0.5707 -0.8546 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.0077 0.7100 -0.0720 30 1 3.8127 2.4461 0.2684 31 1 6.6160 1.5758 2.4332 32 1 2.8163 1.3800 -4.3485 33 1 1.5913 3.4376 -4.7828 34 1 0.2192 5.3388 -3.8689 35 1 -0.8190 6.4225 -1.9464 36 1 -0.6192 5.4567 0.3027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:52 Heat of formation + Delta-G solvation = 68.089824 kcal Electronic energy + Delta-G solvation = -21066.556635 eV Core-core repulsion = 17963.114909 eV Total energy + Delta-G solvation = -3103.441727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70865 -37.76258 -36.46680 -35.47434 -32.72853 -31.86831 -31.00966 -30.04047 -28.87964 -26.38254 -23.79021 -23.48053 -22.39336 -22.06959 -20.14049 -17.51624 -17.39228 -16.43123 -16.22104 -15.27239 -14.92012 -14.75453 -14.22204 -14.14073 -13.65293 -13.46211 -13.11080 -12.83392 -12.41618 -12.22727 -12.06972 -11.85589 -11.44125 -11.15915 -11.05996 -10.98566 -10.75100 -10.51327 -10.29309 -10.12138 -9.96989 -9.45802 -9.30345 -9.07865 -8.90253 -8.42095 -7.65902 -7.31834 -6.00487 -4.01536 0.54493 1.07561 2.05889 2.73215 3.20404 3.34512 3.38797 3.41128 4.24065 4.30314 4.51999 4.74406 4.78781 5.01948 5.15875 5.23409 5.31105 5.36529 5.46243 5.69280 5.80789 5.88029 5.94662 6.00963 6.14906 6.19842 6.36072 6.39223 6.49832 6.62920 6.72635 6.80979 6.88821 7.25418 7.38491 7.81473 8.00925 8.13324 8.38511 8.53360 9.03526 9.61128 11.10386 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.006249 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.634395 B = 4479.661037 C = 4911.835128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.482 5.482 4 C 0.210 3.790 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.382 3.618 14 N -0.526 5.526 15 C 0.107 3.893 16 C -0.193 4.193 17 C -0.004 4.004 18 C -0.130 4.130 19 C -0.083 4.083 20 C -0.146 4.146 21 C 0.027 3.973 22 Cl 0.000 7.000 23 C -0.100 4.100 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.005 0.995 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 5.383 -9.105 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 N -0.206 5.206 4 C 0.087 3.913 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.141 3.859 14 N -0.239 5.239 15 C -0.039 4.039 16 C -0.213 4.213 17 C -0.010 4.010 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.165 4.165 21 C -0.002 4.002 22 Cl 0.030 6.970 23 C -0.105 4.105 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.023 0.977 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.935 4.813 -8.590 15.472 hybrid contribution 0.288 0.248 0.306 0.488 sum -11.647 5.060 -8.284 15.161 Atomic orbital electron populations 1.21775 0.96497 1.00116 1.01571 1.22042 0.94184 0.88371 1.02209 1.60807 1.26466 1.18526 1.14769 1.19711 0.78827 0.97114 0.95652 1.20987 0.93617 1.46642 0.92582 0.91761 1.24947 0.95582 0.95553 0.98329 1.69954 0.98739 1.48804 1.36102 0.86595 0.76890 0.78835 0.85306 1.20238 1.21398 1.20229 1.20557 0.86625 0.88941 0.89814 1.67877 1.20574 1.35683 0.99751 1.22047 0.94928 0.93026 0.93886 1.21667 1.02712 0.98158 0.98791 1.18053 0.96161 0.94766 0.92020 1.20866 0.99355 0.95251 0.99401 1.20819 0.98181 0.99304 0.91953 1.20814 1.01728 0.95831 0.98093 1.20831 0.96412 0.94119 0.88865 1.98470 1.95906 1.84345 1.18251 1.18537 1.01798 0.97440 0.92735 0.93213 0.92041 0.94308 0.94114 0.89116 0.97684 0.95478 0.92868 0.83617 0.84863 0.85215 0.85374 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.06 37.16 0.37 -1.99 16 2 C 0.06 1.18 5.49 -3.82 -0.02 1.16 16 3 N -0.48 -10.48 1.08 -174.18 -0.19 -10.67 16 4 C 0.21 5.50 4.50 -4.97 -0.02 5.47 16 5 C -0.50 -13.63 8.37 -34.44 -0.29 -13.92 16 6 H 0.06 1.72 7.55 -52.49 -0.40 1.32 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.38 7.83 4.57 -155.15 -0.71 7.12 16 14 N -0.53 -10.47 9.36 -12.46 -0.12 -10.59 16 15 C 0.11 1.70 11.06 -17.98 -0.20 1.50 16 16 C -0.19 -2.71 9.87 -39.37 -0.39 -3.09 16 17 C 0.00 -0.07 5.74 -106.83 -0.61 -0.68 16 18 C -0.13 -1.60 9.81 -39.55 -0.39 -1.99 16 19 C -0.08 -0.97 9.95 -39.91 -0.40 -1.36 16 20 C -0.15 -2.00 9.73 -39.86 -0.39 -2.39 16 21 C 0.03 0.46 6.32 -39.50 -0.25 0.21 16 22 Cl 0.00 0.01 25.52 -51.86 -1.32 -1.32 16 23 C -0.10 -1.85 5.76 -106.68 -0.61 -2.46 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 26 H 0.04 0.65 7.63 -51.93 -0.40 0.26 16 27 H 0.04 0.83 7.34 -51.93 -0.38 0.45 16 28 H 0.09 1.92 6.93 -51.93 -0.36 1.56 16 29 H 0.01 0.15 8.06 -51.93 -0.42 -0.27 16 30 H 0.03 0.79 7.98 -51.93 -0.41 0.37 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -30.82 316.93 -9.59 -40.41 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.45 Total: -2.31 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -4.00 Total: -10.91 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.43 Total: -47.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.32 Total: -1.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.82 -9.59 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.501 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds