Wall clock time and date at job start Tue Mar 31 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46726 * 2 1 4 4 C 1.46905 * 110.99395 * 160.32507 * 3 2 1 5 5 C 1.50699 * 109.47417 * 288.91959 * 4 3 2 6 6 H 1.07998 * 119.99611 * 2.67782 * 5 4 3 7 7 C 1.37876 * 120.00202 * 182.67792 * 5 4 3 8 8 N 1.31513 * 120.00041 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47042 * 59.99862 * 9 7 5 11 11 H 1.48496 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47250 * 299.99840 * 9 7 5 13 13 C 1.38418 * 111.00368 * 284.27800 * 3 2 1 14 14 N 1.31972 * 120.14276 * 303.67014 * 13 3 2 15 15 C 1.32652 * 122.63106 * 179.97438 * 14 13 3 16 16 C 1.36069 * 121.99434 * 0.02562 * 15 14 13 17 17 C 1.40863 * 118.85334 * 359.97231 * 16 15 14 18 18 C 1.40169 * 122.17174 * 180.02562 * 17 16 15 19 19 C 1.36310 * 119.50291 * 179.97438 * 18 17 16 20 20 C 1.39232 * 120.99275 * 359.97438 * 19 18 17 21 21 C 1.36442 * 121.02860 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.24699 * 180.02562 * 21 20 19 23 23 C 1.40191 * 119.50619 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.47211 * 176.25952 * 1 2 3 25 25 H 1.08999 * 109.47626 * 296.26224 * 1 2 3 26 26 H 1.09001 * 109.47181 * 56.26490 * 1 2 3 27 27 H 1.09003 * 109.47164 * 240.00208 * 2 1 3 28 28 H 1.09000 * 109.46820 * 120.00234 * 2 1 3 29 29 H 1.08994 * 109.47159 * 48.92522 * 4 3 2 30 30 H 1.08999 * 109.46603 * 168.92489 * 4 3 2 31 31 H 0.96995 * 119.99969 * 179.97438 * 8 7 5 32 32 H 1.08004 * 119.00134 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.57133 * 179.97438 * 16 15 14 34 34 H 1.07994 * 120.24625 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.49699 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.48565 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4126 1.4509 0.4618 5 6 3.4656 1.1669 1.9408 6 1 2.5612 0.9159 2.4751 7 6 4.6685 1.2275 2.6118 8 7 5.7698 1.5327 1.9611 9 14 4.7342 0.8748 4.4450 10 1 4.2496 -0.5054 4.7012 11 1 6.1337 1.0045 4.9242 12 1 3.8715 1.8443 5.1669 13 6 1.8844 1.9590 -1.2523 14 7 2.4380 1.3888 -2.3059 15 6 2.3394 1.8954 -3.5279 16 6 1.6566 3.0453 -3.7786 17 6 1.0363 3.7153 -2.7059 18 6 0.3152 4.9038 -2.8851 19 6 -0.2638 5.5065 -1.8083 20 6 -0.1503 4.9590 -0.5332 21 6 0.5442 3.8034 -0.3233 22 17 0.6723 3.1382 1.2751 23 6 1.1526 3.1567 -1.4082 24 1 -0.3634 -1.0255 -0.0670 25 1 -0.3634 0.4547 0.9216 26 1 -0.3633 0.5707 -0.8546 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.0077 0.7100 -0.0720 30 1 3.8127 2.4461 0.2684 31 1 6.6160 1.5758 2.4332 32 1 2.8163 1.3800 -4.3485 33 1 1.5913 3.4376 -4.7828 34 1 0.2192 5.3388 -3.8689 35 1 -0.8190 6.4225 -1.9464 36 1 -0.6192 5.4567 0.3027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:52 Heat of formation + Delta-G solvation = 51.737081 kcal Electronic energy + Delta-G solvation = -21067.265743 eV Core-core repulsion = 17963.114909 eV Total energy + Delta-G solvation = -3104.150835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96520 -39.10820 -37.84705 -36.79083 -34.80541 -33.16457 -32.20214 -31.58674 -30.25375 -28.23835 -25.12448 -24.67468 -24.28031 -23.40716 -21.56979 -18.80776 -18.70869 -18.27223 -17.56515 -16.95613 -16.43383 -16.09507 -15.82203 -15.35499 -14.86006 -14.79247 -14.60160 -14.37457 -14.12721 -13.75720 -13.51860 -12.95646 -12.91857 -12.78507 -12.72074 -12.42606 -12.27154 -12.21150 -11.93198 -11.86239 -11.56666 -11.38189 -10.60363 -10.59234 -10.53744 -10.09100 -9.07239 -8.77030 -8.18057 -6.27092 -0.64634 -0.08044 0.86183 1.40325 1.43695 1.50187 1.51215 2.06972 2.39834 2.90546 3.04324 3.15515 3.56268 3.78525 3.86750 3.99189 4.07432 4.28222 4.30779 4.44860 4.49109 4.62981 4.69417 4.82834 4.84992 4.95501 5.02856 5.09742 5.12455 5.21010 5.30750 5.38195 5.42942 5.53410 5.70575 5.85427 6.07263 6.17270 6.71006 6.85312 7.07395 7.40714 8.93603 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.006249 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.634395 B = 4479.661037 C = 4911.835128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.060 3.940 3 N -0.472 5.472 4 C 0.238 3.762 5 C -0.502 4.502 6 H 0.068 0.932 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.336 3.664 14 N -0.557 5.557 15 C 0.072 3.928 16 C -0.160 4.160 17 C -0.028 4.028 18 C -0.112 4.112 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.014 4.014 22 Cl -0.033 7.033 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.071 0.929 29 H -0.038 1.038 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 7.469 -10.490 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.067 4.067 3 N -0.195 5.195 4 C 0.114 3.886 5 C -0.541 4.541 6 H 0.086 0.914 7 C -0.196 4.196 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.095 3.905 14 N -0.270 5.270 15 C -0.072 4.072 16 C -0.179 4.179 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.043 4.043 22 Cl -0.003 7.003 23 C -0.122 4.122 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.089 0.911 29 H -0.020 1.020 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.189 0.811 33 H 0.200 0.800 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.356 6.897 -9.995 18.803 hybrid contribution 0.947 -0.250 0.497 1.099 sum -13.408 6.646 -9.497 17.724 Atomic orbital electron populations 1.21607 0.93537 1.01631 1.01346 1.22028 0.96514 0.87663 1.00515 1.60659 1.22937 1.19047 1.16836 1.19116 0.81323 0.93155 0.95038 1.21230 0.93767 1.45934 0.93131 0.91431 1.25878 0.95111 0.95258 1.03320 1.70109 0.99378 1.50155 1.38141 0.85490 0.77039 0.79193 0.79261 1.19053 1.21025 1.19325 1.20546 0.89809 0.90867 0.89249 1.67699 1.21080 1.36990 1.01253 1.22535 0.96821 0.94807 0.93081 1.22187 0.99051 0.96173 1.00497 1.18517 0.97407 0.96391 0.91063 1.21395 0.96736 0.93145 1.01718 1.21348 0.97651 1.00450 0.90393 1.21252 0.99157 0.93904 1.00175 1.20978 0.99609 0.96209 0.87469 1.98441 1.96348 1.85150 1.20376 1.18741 1.01937 0.96821 0.94721 0.90665 0.92096 0.94567 0.95387 0.91079 1.01999 0.99544 0.92835 0.81089 0.80030 0.80749 0.80653 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 10.06 71.98 0.72 -3.49 16 2 C 0.06 2.55 5.49 86.30 0.47 3.02 16 3 N -0.47 -21.92 1.08 -704.97 -0.76 -22.68 16 4 C 0.24 13.52 4.50 85.56 0.39 13.91 16 5 C -0.50 -28.87 8.37 25.60 0.21 -28.65 16 6 H 0.07 3.76 7.55 -2.91 -0.02 3.74 16 7 C 0.00 0.11 5.46 84.65 0.46 0.58 16 8 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 9 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.34 14.48 4.57 133.91 0.61 15.09 16 14 N -0.56 -23.27 9.36 -193.35 -1.81 -25.08 16 15 C 0.07 2.27 11.06 84.06 0.93 3.20 16 16 C -0.16 -4.00 9.87 22.41 0.22 -3.78 16 17 C -0.03 -0.79 5.74 -21.30 -0.12 -0.92 16 18 C -0.11 -2.16 9.81 22.29 0.22 -1.94 16 19 C -0.08 -1.43 9.95 22.06 0.22 -1.21 16 20 C -0.13 -3.13 9.73 22.09 0.21 -2.91 16 21 C -0.01 -0.47 6.32 22.32 0.14 -0.33 16 22 Cl -0.03 -1.27 25.52 -2.72 -0.07 -1.34 16 23 C -0.12 -4.34 5.76 -21.20 -0.12 -4.46 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.06 2.07 7.91 -2.39 -0.02 2.05 16 26 H 0.04 1.24 7.63 -2.39 -0.02 1.22 16 27 H 0.03 1.23 7.34 -2.39 -0.02 1.21 16 28 H 0.07 3.22 6.93 -2.39 -0.02 3.20 16 29 H -0.04 -2.39 8.06 -2.39 -0.02 -2.41 16 30 H -0.01 -0.86 7.98 -2.39 -0.02 -0.88 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.17 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -73.94 316.93 5.32 -68.62 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.08 Total: 3.14 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.57 Total: -11.90 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -2.29 Total: -105.84 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -73.94 5.32 -68.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.354 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds