Wall clock time and date at job start Tue Mar 31 2020 08:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47749 * 2 1 4 4 C 1.46901 * 111.00073 * 74.70361 * 3 2 1 5 5 C 1.50693 * 109.47490 * 199.54599 * 4 3 2 6 6 H 1.08008 * 119.99840 * 4.94868 * 5 4 3 7 7 C 1.37879 * 120.00182 * 184.94652 * 5 4 3 8 8 N 1.31507 * 119.99982 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47531 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46976 * 120.00050 * 9 7 5 12 12 H 1.48500 * 109.47243 * 239.99808 * 9 7 5 13 13 C 1.38652 * 111.00282 * 198.66180 * 3 2 1 14 14 C 1.38543 * 121.04008 * 295.75925 * 13 3 2 15 15 C 1.38969 * 119.68588 * 179.73424 * 14 13 3 16 16 Cl 1.73592 * 119.08815 * 180.27994 * 15 14 13 17 17 N 1.31394 * 121.81886 * 0.58770 * 15 14 13 18 18 C 1.33804 * 121.66225 * 359.69351 * 17 15 14 19 19 C 1.40553 * 120.97936 * 180.02562 * 18 17 15 20 20 C 1.36130 * 119.76303 * 179.97438 * 19 18 17 21 21 C 1.39270 * 121.03011 * 0.02737 * 20 19 18 22 22 C 1.36260 * 120.80985 * 359.92738 * 21 20 19 23 23 C 1.40160 * 119.63912 * 0.08859 * 22 21 20 24 24 H 1.09004 * 109.46834 * 53.86809 * 1 2 3 25 25 H 1.09004 * 109.47612 * 173.87044 * 1 2 3 26 26 H 1.09003 * 109.46681 * 293.87531 * 1 2 3 27 27 H 1.09004 * 109.47163 * 239.99580 * 2 1 3 28 28 H 1.09002 * 109.47213 * 120.00508 * 2 1 3 29 29 H 1.09004 * 109.46886 * 319.54769 * 4 3 2 30 30 H 1.08999 * 109.47192 * 79.54241 * 4 3 2 31 31 H 0.96998 * 120.00090 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.15844 * 0.02562 * 14 13 3 33 33 H 1.08003 * 120.11184 * 359.95375 * 19 18 17 34 34 H 1.07999 * 119.48742 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.59076 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.17945 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8542 2.0019 1.3228 5 6 1.9015 3.5019 1.1870 6 1 1.9602 3.9539 0.2079 7 6 1.8697 4.2974 2.3128 8 7 1.7977 3.7471 3.5050 9 14 1.9276 6.1569 2.1443 10 1 2.0058 6.5215 0.7069 11 1 0.7010 6.7461 2.7390 12 1 3.1225 6.6812 2.8532 13 6 3.3417 1.4445 -0.4142 14 6 4.3498 0.8487 0.3261 15 6 5.6646 0.9210 -0.1181 16 17 6.9145 0.1627 0.8178 17 7 5.9884 1.5525 -1.2239 18 6 5.0669 2.1549 -1.9844 19 6 5.4293 2.8260 -3.1649 20 6 4.4713 3.4300 -3.9202 21 6 3.1313 3.3953 -3.5422 22 6 2.7434 2.7532 -2.4047 23 6 3.7042 2.1211 -1.6036 24 1 -0.3633 0.6060 -0.8300 25 1 -0.3634 -1.0218 -0.1097 26 1 -0.3633 0.4160 0.9398 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.8938 1.7052 1.7444 30 1 2.6576 1.6711 1.9811 31 1 1.7750 4.3067 4.2969 32 1 4.1145 0.3264 1.2418 33 1 6.4643 2.8627 -3.4714 34 1 4.7548 3.9448 -4.8263 35 1 2.3904 3.8819 -4.1591 36 1 1.7015 2.7323 -2.1215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:48 Heat of formation + Delta-G solvation = 52.490886 kcal Electronic energy + Delta-G solvation = -20785.337795 eV Core-core repulsion = 17681.219648 eV Total energy + Delta-G solvation = -3104.118147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68477 -37.74164 -37.02224 -35.82154 -32.83548 -32.38066 -30.20004 -30.12894 -28.97907 -26.77952 -23.80874 -23.35872 -22.83819 -21.83006 -20.06960 -17.89470 -17.34579 -16.81413 -16.25142 -15.10770 -14.78809 -14.65316 -14.31489 -14.07636 -13.97805 -13.74310 -13.34440 -13.04373 -12.37736 -12.29570 -11.88544 -11.73760 -11.49481 -11.42354 -11.15919 -11.03931 -10.99277 -10.76622 -10.70192 -10.50965 -10.10727 -9.77028 -9.44174 -9.31800 -8.55896 -8.40861 -7.85878 -7.76252 -6.14074 -4.15915 0.64400 1.04512 2.02565 2.27837 3.10927 3.25481 3.33599 3.38114 4.20942 4.33973 4.43488 4.65633 5.01566 5.14885 5.21885 5.22619 5.35522 5.40445 5.52564 5.60528 5.67993 5.79019 5.87602 6.05710 6.09403 6.25788 6.28300 6.35819 6.57314 6.59650 6.70180 6.78384 6.97589 7.08885 7.11310 7.58049 7.90863 7.95812 7.98878 8.26229 8.90807 9.49185 10.96266 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.006866 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.184122 B = 4077.134678 C = 4440.397255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 N -0.510 5.510 4 C 0.193 3.807 5 C -0.511 4.511 6 H 0.065 0.935 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.230 3.770 14 C -0.211 4.211 15 C 0.227 3.773 16 Cl -0.045 7.045 17 N -0.493 5.493 18 C 0.151 3.849 19 C -0.110 4.110 20 C -0.092 4.092 21 C -0.143 4.143 22 C -0.048 4.048 23 C -0.091 4.091 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -5.990 -10.715 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 N -0.232 5.232 4 C 0.071 3.929 5 C -0.549 4.549 6 H 0.083 0.917 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.126 3.874 14 C -0.235 4.235 15 C 0.049 3.951 16 Cl -0.016 7.016 17 N -0.205 5.205 18 C 0.029 3.971 19 C -0.129 4.129 20 C -0.112 4.112 21 C -0.161 4.161 22 C -0.067 4.067 23 C -0.094 4.094 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.422 -5.667 -11.092 12.918 hybrid contribution -0.092 0.585 1.221 1.357 sum 3.330 -5.082 -9.871 11.591 Atomic orbital electron populations 1.21734 0.94435 1.00606 1.03188 1.22071 0.96635 0.88177 1.00072 1.59663 1.13198 1.16621 1.33753 1.20051 0.97454 0.94903 0.80523 1.21131 1.50411 0.90218 0.93145 0.91704 1.24937 0.95136 0.99022 0.95130 1.69938 1.50390 1.35469 0.97602 0.86480 0.77642 0.85252 0.78407 1.19525 1.20855 1.20998 1.19039 0.89899 0.88177 0.90251 1.22314 0.91631 1.06363 1.03194 1.21490 0.87579 0.94660 0.91341 1.98377 1.54328 1.78992 1.69932 1.67229 1.37117 1.10659 1.05509 1.18531 0.87827 0.96247 0.94451 1.20611 1.00124 0.98776 0.93343 1.20843 0.92993 0.98102 0.99277 1.20918 0.96057 1.01228 0.97886 1.21106 1.00288 0.93151 0.92112 1.18812 0.93963 1.00550 0.96052 0.91899 0.92944 0.91957 0.92025 0.94524 0.94127 0.97399 0.92796 0.84109 0.85076 0.85709 0.85787 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.92 37.16 0.37 -1.70 16 2 C 0.06 0.92 5.27 -3.83 -0.02 0.90 16 3 N -0.51 -10.07 3.56 -172.06 -0.61 -10.68 16 4 C 0.19 4.63 4.49 -4.98 -0.02 4.61 16 5 C -0.51 -13.69 8.95 -34.44 -0.31 -13.99 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.23 4.53 4.21 -83.40 -0.35 4.18 16 14 C -0.21 -4.03 8.39 -39.20 -0.33 -4.36 16 15 C 0.23 4.21 7.26 -17.47 -0.13 4.08 16 16 Cl -0.04 -0.71 29.08 -51.86 -1.51 -2.22 16 17 N -0.49 -9.30 10.30 -8.21 -0.08 -9.39 16 18 C 0.15 2.75 6.60 -84.88 -0.56 2.19 16 19 C -0.11 -1.64 9.98 -39.47 -0.39 -2.04 16 20 C -0.09 -1.19 9.94 -39.96 -0.40 -1.59 16 21 C -0.14 -1.97 9.96 -39.91 -0.40 -2.37 16 22 C -0.05 -0.80 9.56 -39.57 -0.38 -1.18 16 23 C -0.09 -1.70 5.75 -106.66 -0.61 -2.31 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.00 6.87 -51.93 -0.36 0.65 16 27 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 28 H 0.04 0.59 8.01 -51.93 -0.42 0.18 16 29 H 0.04 1.01 6.51 -51.93 -0.34 0.68 16 30 H 0.01 0.21 6.74 -51.93 -0.35 -0.14 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.14 2.59 7.49 -52.48 -0.39 2.20 16 33 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.14 2.43 7.60 -52.49 -0.40 2.03 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -29.16 320.55 -9.61 -38.76 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.32 Total: -0.78 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.63 Total: -12.03 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.04 Total: -45.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.16 -9.61 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.255 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds