Wall clock time and date at job start Tue Mar 31 2020 08:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47749 * 2 1 4 4 C 1.46901 * 111.00073 * 74.70361 * 3 2 1 5 5 C 1.50693 * 109.47490 * 199.54599 * 4 3 2 6 6 H 1.08008 * 119.99840 * 4.94868 * 5 4 3 7 7 C 1.37879 * 120.00182 * 184.94652 * 5 4 3 8 8 N 1.31507 * 119.99982 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47531 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46976 * 120.00050 * 9 7 5 12 12 H 1.48500 * 109.47243 * 239.99808 * 9 7 5 13 13 C 1.38652 * 111.00282 * 198.66180 * 3 2 1 14 14 C 1.38543 * 121.04008 * 295.75925 * 13 3 2 15 15 C 1.38969 * 119.68588 * 179.73424 * 14 13 3 16 16 Cl 1.73592 * 119.08815 * 180.27994 * 15 14 13 17 17 N 1.31394 * 121.81886 * 0.58770 * 15 14 13 18 18 C 1.33804 * 121.66225 * 359.69351 * 17 15 14 19 19 C 1.40553 * 120.97936 * 180.02562 * 18 17 15 20 20 C 1.36130 * 119.76303 * 179.97438 * 19 18 17 21 21 C 1.39270 * 121.03011 * 0.02737 * 20 19 18 22 22 C 1.36260 * 120.80985 * 359.92738 * 21 20 19 23 23 C 1.40160 * 119.63912 * 0.08859 * 22 21 20 24 24 H 1.09004 * 109.46834 * 53.86809 * 1 2 3 25 25 H 1.09004 * 109.47612 * 173.87044 * 1 2 3 26 26 H 1.09003 * 109.46681 * 293.87531 * 1 2 3 27 27 H 1.09004 * 109.47163 * 239.99580 * 2 1 3 28 28 H 1.09002 * 109.47213 * 120.00508 * 2 1 3 29 29 H 1.09004 * 109.46886 * 319.54769 * 4 3 2 30 30 H 1.08999 * 109.47192 * 79.54241 * 4 3 2 31 31 H 0.96998 * 120.00090 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.15844 * 0.02562 * 14 13 3 33 33 H 1.08003 * 120.11184 * 359.95375 * 19 18 17 34 34 H 1.07999 * 119.48742 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.59076 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.17945 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8542 2.0019 1.3228 5 6 1.9015 3.5019 1.1870 6 1 1.9602 3.9539 0.2079 7 6 1.8697 4.2974 2.3128 8 7 1.7977 3.7471 3.5050 9 14 1.9276 6.1569 2.1443 10 1 2.0058 6.5215 0.7069 11 1 0.7010 6.7461 2.7390 12 1 3.1225 6.6812 2.8532 13 6 3.3417 1.4445 -0.4142 14 6 4.3498 0.8487 0.3261 15 6 5.6646 0.9210 -0.1181 16 17 6.9145 0.1627 0.8178 17 7 5.9884 1.5525 -1.2239 18 6 5.0669 2.1549 -1.9844 19 6 5.4293 2.8260 -3.1649 20 6 4.4713 3.4300 -3.9202 21 6 3.1313 3.3953 -3.5422 22 6 2.7434 2.7532 -2.4047 23 6 3.7042 2.1211 -1.6036 24 1 -0.3633 0.6060 -0.8300 25 1 -0.3634 -1.0218 -0.1097 26 1 -0.3633 0.4160 0.9398 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.8938 1.7052 1.7444 30 1 2.6576 1.6711 1.9811 31 1 1.7750 4.3067 4.2969 32 1 4.1145 0.3264 1.2418 33 1 6.4643 2.8627 -3.4714 34 1 4.7548 3.9448 -4.8263 35 1 2.3904 3.8819 -4.1591 36 1 1.7015 2.7323 -2.1215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:45 Heat of formation + Delta-G solvation = 36.784922 kcal Electronic energy + Delta-G solvation = -20786.018857 eV Core-core repulsion = 17681.219648 eV Total energy + Delta-G solvation = -3104.799209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.03435 -39.17135 -38.34822 -37.13409 -34.86962 -33.71057 -31.52059 -31.42948 -30.50472 -28.53815 -25.31112 -24.66498 -24.50514 -23.13302 -21.51160 -19.20251 -18.86931 -18.29894 -17.99147 -16.84511 -16.28810 -15.92055 -15.84467 -15.43154 -15.34154 -14.99084 -14.88696 -14.35093 -14.21740 -13.59535 -13.55474 -13.10281 -12.94774 -12.83290 -12.62508 -12.51716 -12.35777 -12.29588 -12.16358 -12.02404 -11.83665 -11.45855 -11.08223 -10.76603 -10.64353 -9.70177 -9.44536 -9.08091 -8.23987 -6.32060 -0.68289 -0.27206 0.66129 0.97286 1.35475 1.37645 1.49139 1.84459 2.35225 2.82297 3.04782 3.10685 3.37598 3.69593 3.83937 4.01095 4.10958 4.14214 4.27026 4.38630 4.43362 4.55353 4.59963 4.75187 4.83546 4.98627 5.01687 5.14081 5.15156 5.20711 5.33224 5.39704 5.50047 5.59385 5.61942 5.93246 5.95619 6.25417 6.43900 6.60788 6.81679 7.36698 8.86409 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.006866 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.184122 B = 4077.134678 C = 4440.397255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 N -0.506 5.506 4 C 0.210 3.790 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.285 1.285 13 C 0.208 3.792 14 C -0.223 4.223 15 C 0.213 3.787 16 Cl -0.028 7.028 17 N -0.499 5.499 18 C 0.128 3.872 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.107 4.107 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.026 0.974 30 H -0.021 1.021 31 H 0.264 0.736 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -4.850 -13.422 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 N -0.228 5.228 4 C 0.086 3.914 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.211 1.211 13 C 0.104 3.896 14 C -0.246 4.246 15 C 0.035 3.965 16 Cl 0.000 7.000 17 N -0.211 5.211 18 C 0.006 3.994 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.110 4.110 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.044 0.956 30 H -0.003 1.003 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.595 -4.542 -13.820 14.985 hybrid contribution -0.116 0.213 1.929 1.945 sum 3.479 -4.329 -11.890 13.123 Atomic orbital electron populations 1.21692 0.92994 1.02507 1.02001 1.22221 0.97773 0.86533 1.00692 1.59567 1.13876 1.18454 1.30863 1.19639 0.95438 0.94018 0.82271 1.21407 1.49611 0.91714 0.92845 0.92175 1.25731 0.95014 1.03325 0.94905 1.70046 1.51618 1.36966 0.98248 0.85547 0.77703 0.80206 0.78583 1.18790 1.19913 1.21130 1.19223 0.89699 0.89290 0.91347 1.22306 0.92259 1.06863 1.03191 1.21575 0.87870 0.95303 0.91763 1.98367 1.53396 1.78678 1.69541 1.67297 1.37514 1.10711 1.05570 1.19032 0.87602 0.97085 0.95693 1.20963 1.01824 0.98398 0.92348 1.21356 0.91901 0.96301 0.99924 1.21386 0.97475 0.98767 0.96411 1.21151 0.99583 0.95053 0.93663 1.19016 0.94907 1.00922 0.96168 0.91793 0.89718 0.94072 0.90281 0.94896 0.95570 1.00276 0.92718 0.84697 0.83151 0.81061 0.82254 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.92 71.98 0.71 -3.17 16 2 C 0.05 1.77 5.27 86.30 0.45 2.22 16 3 N -0.51 -20.57 3.56 -698.27 -2.49 -23.06 16 4 C 0.21 10.53 4.49 85.55 0.38 10.91 16 5 C -0.52 -28.37 8.95 25.60 0.23 -28.14 16 6 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 7 C 0.01 0.50 5.46 84.66 0.46 0.96 16 8 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 9 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.21 8.41 4.21 38.96 0.16 8.57 16 14 C -0.22 -8.85 8.39 22.52 0.19 -8.66 16 15 C 0.21 8.04 7.26 84.93 0.62 8.66 16 16 Cl -0.03 -0.91 29.08 -2.72 -0.08 -0.99 16 17 N -0.50 -18.74 10.30 -179.90 -1.85 -20.60 16 18 C 0.13 4.53 6.60 40.22 0.27 4.80 16 19 C -0.12 -3.16 9.98 22.34 0.22 -2.93 16 20 C -0.08 -1.60 9.94 22.03 0.22 -1.38 16 21 C -0.12 -2.93 9.96 22.06 0.22 -2.71 16 22 C -0.08 -2.44 9.56 22.28 0.21 -2.22 16 23 C -0.11 -4.00 5.75 -21.18 -0.12 -4.13 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.35 6.87 -2.39 -0.02 1.33 16 27 H 0.08 2.33 7.93 -2.38 -0.02 2.31 16 28 H 0.03 1.10 8.01 -2.39 -0.02 1.08 16 29 H 0.03 1.38 6.51 -2.38 -0.02 1.36 16 30 H -0.02 -1.13 6.74 -2.39 -0.02 -1.15 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.14 5.32 7.49 -2.91 -0.02 5.30 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.13 4.49 7.60 -2.91 -0.02 4.47 16 Total: -1.00 -64.50 320.55 3.21 -61.28 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.09 Total: 8.66 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 4.23 Total: -17.22 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.05 Total: -97.92 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -64.50 3.21 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.069 kcal (2) G-P(sol) polarization free energy of solvation -64.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds