Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46930 * 239.99955 * 3 2 1 5 5 H 1.48497 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47034 * 120.00113 * 3 2 1 7 7 C 1.37875 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00398 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53534 * 60.10060 * 9 7 2 11 11 C 1.53124 * 109.50241 * 180.19256 * 9 7 2 12 12 C 1.53119 * 109.15841 * 177.59421 * 11 9 7 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 9 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.38562 * 110.99964 * 174.15903 * 14 13 12 16 16 N 1.32734 * 119.16581 * 124.20582 * 15 14 13 17 17 C 1.31669 * 121.46280 * 179.97438 * 16 15 14 18 18 C 1.41012 * 119.31935 * 0.02562 * 17 16 15 19 19 N 1.34544 * 129.97291 * 179.97438 * 18 17 16 20 20 C 1.28028 * 118.03226 * 180.02562 * 19 18 17 21 21 S 1.75855 * 110.51593 * 0.02562 * 20 19 18 22 22 C 1.40209 * 117.17442 * 0.02562 * 18 17 16 23 23 N 1.32112 * 119.16667 * 303.94095 * 15 14 13 24 24 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 25 25 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.52523 * 297.50054 * 11 9 7 27 27 H 1.08999 * 109.52008 * 57.69730 * 11 9 7 28 28 H 1.09004 * 109.50189 * 62.29271 * 12 11 9 29 29 H 1.09001 * 109.50740 * 182.36562 * 12 11 9 30 30 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 31 31 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 32 32 H 1.08004 * 120.34503 * 179.97438 * 17 16 15 33 33 H 1.08000 * 124.74334 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.45990 * 181.76055 * 24 14 13 35 35 H 1.08997 * 109.46419 * 301.72736 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6255 -2.5589 -0.8902 11 6 2.2453 -3.6635 0.0060 12 6 1.4725 -4.9840 0.0667 13 6 0.5855 -4.9936 1.3138 14 7 -0.3481 -3.8613 1.2606 15 6 -1.2529 -3.9140 2.3088 16 7 -1.3582 -2.8729 3.1253 17 6 -2.2031 -2.8742 4.1351 18 6 -3.0142 -4.0065 4.3553 19 7 -3.9369 -4.2369 5.3071 20 6 -4.5477 -5.3620 5.2931 21 16 -3.9801 -6.3549 3.9573 22 6 -2.8671 -5.0819 3.4678 23 7 -1.9926 -4.9972 2.4670 24 6 0.3704 -2.5807 1.2495 25 1 -0.4850 0.8401 0.0004 26 1 2.8456 -3.6343 -0.9033 27 1 2.8964 -3.5823 0.8764 28 1 0.8505 -5.0829 -0.8230 29 1 2.1757 -5.8155 0.1133 30 1 1.2090 -4.9086 2.2037 31 1 0.0231 -5.9265 1.3524 32 1 -2.2737 -2.0172 4.7887 33 1 -5.3057 -5.6597 6.0025 34 1 -0.3483 -1.7612 1.2414 35 1 0.9950 -2.5070 2.1397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 95.383628 kcal Electronic energy + Delta-G solvation = -20595.115302 eV Core-core repulsion = 17527.193581 eV Total energy + Delta-G solvation = -3067.921721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33948 -38.95220 -37.30605 -33.85584 -33.49396 -32.38692 -29.72011 -29.41289 -25.78784 -25.19487 -24.44366 -23.33861 -21.67384 -21.43656 -19.14279 -18.54356 -17.71954 -17.23384 -16.24038 -15.65021 -15.51404 -14.56239 -14.53957 -14.28257 -14.06168 -13.81791 -13.40750 -12.77836 -12.60768 -12.43129 -12.29653 -11.94472 -11.37638 -11.33940 -10.97420 -10.86685 -10.56163 -10.28807 -10.28073 -9.97292 -9.84990 -9.41880 -9.17642 -8.99415 -8.96146 -8.81875 -8.40149 -7.79323 -6.03713 -4.11370 0.21681 0.85002 0.98769 1.51488 2.22776 3.30387 3.36143 3.37863 3.49819 3.77510 3.83431 4.25656 4.39756 4.44918 4.81695 5.13682 5.29012 5.42552 5.47104 5.59406 5.74504 5.88132 6.02421 6.29483 6.34383 6.54291 6.59972 6.70494 6.79033 6.91698 7.00561 7.18555 7.33835 7.62812 7.73723 7.89072 8.03745 8.23183 8.41106 8.92526 9.54426 11.02090 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.004550 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.145961 B = 6152.013977 C = 7127.743994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.072 3.928 14 N -0.451 5.451 15 C 0.531 3.469 16 N -0.519 5.519 17 C 0.260 3.740 18 C -0.084 4.084 19 N -0.429 5.429 20 C 0.076 3.924 21 S 0.088 5.912 22 C 0.104 3.896 23 N -0.510 5.510 24 C 0.071 3.929 25 H 0.263 0.737 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.212 0.788 34 H 0.124 0.876 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -11.558 9.431 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.054 4.054 14 N -0.168 5.168 15 C 0.173 3.827 16 N -0.237 5.237 17 C 0.079 3.921 18 C -0.211 4.211 19 N -0.140 5.140 20 C -0.232 4.232 21 S 0.334 5.666 22 C -0.155 4.155 23 N -0.233 5.233 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.198 0.802 33 H 0.229 0.771 34 H 0.142 0.858 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.825 -12.056 8.131 16.064 hybrid contribution 0.466 1.676 1.140 2.079 sum -6.359 -10.381 9.271 15.302 Atomic orbital electron populations 1.69841 1.05871 1.26833 1.49692 1.25006 0.94858 0.99212 0.94687 0.86639 0.79603 0.83046 0.78622 1.20249 1.21260 1.20231 1.21058 0.92921 0.90112 1.51564 0.92335 1.18779 0.92140 0.92217 0.93668 0.94582 1.21753 0.98629 0.94306 1.00664 1.21672 0.97797 0.98913 0.97099 1.22148 0.92728 0.91868 0.98678 1.58623 1.17665 1.08945 1.31550 1.21427 0.91755 0.83277 0.86226 1.68514 1.21344 1.29257 1.04573 1.23077 0.84173 0.93836 0.91021 1.20687 1.03614 0.99452 0.97302 1.65976 1.06453 1.19473 1.22069 1.28970 1.02771 0.91127 1.00340 1.85066 1.35223 1.17713 1.28599 1.24580 0.98715 0.96775 0.95429 1.67462 1.08422 1.27572 1.19858 1.22782 0.97861 0.85609 0.99139 0.92709 0.92637 0.93311 0.91275 0.92045 0.94209 0.90170 0.80150 0.77118 0.85800 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 11.33 55.43 0.63 -24.32 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.84 8.56 -34.44 -0.29 -14.13 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.12 -2.33 5.23 -26.61 -0.14 -2.47 16 12 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 13 C 0.07 1.29 5.33 -3.83 -0.02 1.27 16 14 N -0.45 -9.60 4.72 -175.42 -0.83 -10.43 16 15 C 0.53 10.85 7.18 -322.76 -2.32 8.54 16 16 N -0.52 -10.29 8.61 -13.43 -0.12 -10.40 16 17 C 0.26 4.22 11.38 -16.57 -0.19 4.03 16 18 C -0.08 -1.32 7.01 -84.89 -0.60 -1.92 16 19 N -0.43 -5.67 10.55 -11.57 -0.12 -5.79 16 20 C 0.08 0.74 12.40 51.18 0.63 1.37 16 21 S 0.09 1.01 23.39 -107.50 -2.51 -1.51 16 22 C 0.10 1.71 7.75 -16.23 -0.13 1.58 16 23 N -0.51 -9.66 9.69 -12.57 -0.12 -9.78 16 24 C 0.07 1.68 3.68 -3.84 -0.01 1.67 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.36 7.56 -51.93 -0.39 0.97 16 32 H 0.18 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.12 3.35 5.63 -51.93 -0.29 3.06 16 35 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -30.50 303.64 -11.07 -41.57 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.03 Total: -0.30 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.53 Total: 0.48 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.56 Total: -60.73 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.50 -11.07 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.957 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds