Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46930 * 239.99955 * 3 2 1 5 5 H 1.48497 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47034 * 120.00113 * 3 2 1 7 7 C 1.37875 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00398 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53534 * 60.10060 * 9 7 2 11 11 C 1.53124 * 109.50241 * 180.19256 * 9 7 2 12 12 C 1.53119 * 109.15841 * 177.59421 * 11 9 7 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 9 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.38562 * 110.99964 * 174.15903 * 14 13 12 16 16 N 1.32734 * 119.16581 * 124.20582 * 15 14 13 17 17 C 1.31669 * 121.46280 * 179.97438 * 16 15 14 18 18 C 1.41012 * 119.31935 * 0.02562 * 17 16 15 19 19 N 1.34544 * 129.97291 * 179.97438 * 18 17 16 20 20 C 1.28028 * 118.03226 * 180.02562 * 19 18 17 21 21 S 1.75855 * 110.51593 * 0.02562 * 20 19 18 22 22 C 1.40209 * 117.17442 * 0.02562 * 18 17 16 23 23 N 1.32112 * 119.16667 * 303.94095 * 15 14 13 24 24 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 25 25 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.52523 * 297.50054 * 11 9 7 27 27 H 1.08999 * 109.52008 * 57.69730 * 11 9 7 28 28 H 1.09004 * 109.50189 * 62.29271 * 12 11 9 29 29 H 1.09001 * 109.50740 * 182.36562 * 12 11 9 30 30 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 31 31 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 32 32 H 1.08004 * 120.34503 * 179.97438 * 17 16 15 33 33 H 1.08000 * 124.74334 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.45990 * 181.76055 * 24 14 13 35 35 H 1.08997 * 109.46419 * 301.72736 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6255 -2.5589 -0.8902 11 6 2.2453 -3.6635 0.0060 12 6 1.4725 -4.9840 0.0667 13 6 0.5855 -4.9936 1.3138 14 7 -0.3481 -3.8613 1.2606 15 6 -1.2529 -3.9140 2.3088 16 7 -1.3582 -2.8729 3.1253 17 6 -2.2031 -2.8742 4.1351 18 6 -3.0142 -4.0065 4.3553 19 7 -3.9369 -4.2369 5.3071 20 6 -4.5477 -5.3620 5.2931 21 16 -3.9801 -6.3549 3.9573 22 6 -2.8671 -5.0819 3.4678 23 7 -1.9926 -4.9972 2.4670 24 6 0.3704 -2.5807 1.2495 25 1 -0.4850 0.8401 0.0004 26 1 2.8456 -3.6343 -0.9033 27 1 2.8964 -3.5823 0.8764 28 1 0.8505 -5.0829 -0.8230 29 1 2.1757 -5.8155 0.1133 30 1 1.2090 -4.9086 2.2037 31 1 0.0231 -5.9265 1.3524 32 1 -2.2737 -2.0172 4.7887 33 1 -5.3057 -5.6597 6.0025 34 1 -0.3483 -1.7612 1.2414 35 1 0.9950 -2.5070 2.1397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = 76.149910 kcal Electronic energy + Delta-G solvation = -20595.949339 eV Core-core repulsion = 17527.193581 eV Total energy + Delta-G solvation = -3068.755758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.62577 -40.33057 -38.64401 -35.54331 -34.91377 -34.05767 -31.49543 -30.68841 -27.31304 -26.72953 -25.91204 -24.68323 -23.24763 -22.79666 -20.67331 -19.86015 -19.17871 -18.49853 -18.05804 -17.00322 -16.86670 -16.41668 -15.74296 -15.58460 -15.33221 -15.17913 -14.98042 -14.47192 -14.15396 -13.96898 -13.65551 -13.46687 -12.87052 -12.71802 -12.64744 -12.54037 -12.27810 -12.20202 -11.85593 -11.55299 -11.01493 -10.94870 -10.90153 -10.81078 -10.43813 -10.20495 -9.94866 -9.22548 -8.09519 -6.25043 -0.92995 -0.28750 -0.20547 0.54131 1.14837 1.43396 1.44584 1.52376 2.11647 2.44122 2.48899 2.75385 3.02422 3.15648 3.25517 3.69357 3.98789 4.00329 4.04516 4.28088 4.44844 4.51853 4.72380 4.77516 4.81657 4.91232 4.99240 5.15808 5.22822 5.28460 5.42686 5.58510 5.64372 5.91660 6.06830 6.12787 6.33006 6.36603 6.84703 6.91911 7.44404 8.94707 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.004550 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.145961 B = 6152.013977 C = 7127.743994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.047 3.953 10 H -0.001 1.001 11 C -0.109 4.109 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.468 5.468 15 C 0.505 3.495 16 N -0.554 5.554 17 C 0.247 3.753 18 C -0.074 4.074 19 N -0.456 5.456 20 C 0.114 3.886 21 S 0.141 5.859 22 C 0.060 3.940 23 N -0.518 5.518 24 C 0.098 3.902 25 H 0.261 0.739 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.207 0.793 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -13.360 11.192 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.018 0.982 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.052 4.052 14 N -0.186 5.186 15 C 0.146 3.854 16 N -0.273 5.273 17 C 0.068 3.932 18 C -0.200 4.200 19 N -0.168 5.168 20 C -0.193 4.193 21 S 0.388 5.612 22 C -0.198 4.198 23 N -0.242 5.242 24 C -0.028 4.028 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.286 0.714 34 H 0.106 0.894 35 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -7.855 -13.894 9.920 18.792 hybrid contribution 0.521 2.066 0.786 2.271 sum -7.334 -11.828 10.706 17.559 Atomic orbital electron populations 1.70016 1.07315 1.27293 1.50595 1.25789 0.95579 1.02570 0.94385 0.85647 0.78375 0.78934 0.78926 1.19437 1.21183 1.19537 1.21454 0.93229 0.91481 1.51323 0.92172 1.18734 0.92672 0.93502 0.92348 0.98240 1.21634 0.97839 0.94213 1.01001 1.21636 0.97950 0.98442 0.96465 1.22237 0.92605 0.91375 0.99022 1.58611 1.18256 1.08330 1.33444 1.21341 0.92514 0.84457 0.87058 1.68440 1.23199 1.29738 1.05878 1.23483 0.83941 0.95246 0.90489 1.20831 1.03146 0.98806 0.97220 1.66089 1.07372 1.21241 1.22082 1.30140 1.00957 0.89055 0.99112 1.84968 1.32542 1.15602 1.28098 1.25320 0.99666 0.99425 0.95417 1.67451 1.08873 1.26998 1.20839 1.22141 0.96498 0.86425 0.97771 0.93024 0.92035 0.93089 0.91760 0.88032 0.94283 0.88898 0.77689 0.71423 0.89386 0.96717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.95 11.33 21.45 0.24 -53.70 16 2 C 0.02 0.91 5.30 84.65 0.45 1.36 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -29.66 8.56 25.60 0.22 -29.44 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.05 2.39 2.26 -11.49 -0.03 2.36 16 10 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 11 C -0.11 -4.44 5.23 30.68 0.16 -4.28 16 12 C -0.11 -3.61 6.09 30.65 0.19 -3.43 16 13 C 0.07 2.66 5.33 86.33 0.46 3.12 16 14 N -0.47 -20.86 4.72 -708.90 -3.34 -24.21 16 15 C 0.50 21.51 7.18 261.47 1.88 23.38 16 16 N -0.55 -23.09 8.61 -196.41 -1.69 -24.78 16 17 C 0.25 8.19 11.38 85.40 0.97 9.16 16 18 C -0.07 -2.25 7.01 39.89 0.28 -1.97 16 19 N -0.46 -10.70 10.55 -190.43 -2.01 -12.71 16 20 C 0.11 1.68 12.40 130.80 1.62 3.30 16 21 S 0.14 2.75 23.39 -56.49 -1.32 1.43 16 22 C 0.06 1.90 7.75 84.97 0.66 2.56 16 23 N -0.52 -19.86 9.69 -193.68 -1.88 -21.74 16 24 C 0.10 4.94 3.68 86.32 0.32 5.26 16 25 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 3.12 7.56 -2.38 -0.02 3.10 16 32 H 0.21 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.27 0.64 8.06 -2.91 -0.02 0.61 16 34 H 0.09 5.10 5.63 -2.39 -0.01 5.08 16 35 H 0.01 0.76 8.10 -2.39 -0.02 0.74 16 Total: -1.00 -71.06 303.64 0.31 -70.74 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.11 Total: 7.72 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 7.18 Total: 11.39 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -8.68 Total: -137.14 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.32 Total: 1.43 kcal Total: -71.06 0.31 -70.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.891 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds