Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09002 * 109.49975 * 299.72299 * 9 7 2 11 11 C 1.53115 * 109.49999 * 179.64250 * 9 7 2 12 12 C 1.53126 * 109.15430 * 182.44433 * 11 9 7 13 13 C 1.53038 * 109.31277 * 57.59453 * 12 11 9 14 14 N 1.46844 * 109.52060 * 300.84155 * 13 12 11 15 15 C 1.38559 * 110.99813 * 185.83920 * 14 13 12 16 16 N 1.32734 * 119.17042 * 235.78769 * 15 14 13 17 17 C 1.31667 * 121.46755 * 179.97438 * 16 15 14 18 18 C 1.41015 * 119.31718 * 0.02562 * 17 16 15 19 19 N 1.34546 * 129.96723 * 179.97438 * 18 17 16 20 20 C 1.28027 * 118.02657 * 180.02562 * 19 18 17 21 21 S 1.75863 * 110.51680 * 359.97438 * 20 19 18 22 22 C 1.40207 * 117.17386 * 359.97438 * 18 17 16 23 23 N 1.32118 * 119.16643 * 55.52026 * 15 14 13 24 24 C 1.46843 * 111.20001 * 61.74105 * 14 13 12 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.52389 * 302.30469 * 11 9 7 27 27 H 1.08997 * 109.52669 * 62.50245 * 11 9 7 28 28 H 1.09005 * 109.47292 * 297.65139 * 12 11 9 29 29 H 1.09001 * 109.50194 * 177.55892 * 12 11 9 30 30 H 1.08998 * 109.45892 * 180.82573 * 13 12 11 31 31 H 1.08998 * 109.45385 * 60.85107 * 13 12 11 32 32 H 1.08002 * 120.34303 * 180.02562 * 17 16 15 33 33 H 1.08009 * 124.74328 * 179.97438 * 20 19 18 34 34 H 1.09001 * 109.46028 * 178.24032 * 24 14 13 35 35 H 1.09000 * 109.45978 * 58.27557 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6240 -2.5614 0.8842 11 6 2.2453 -3.6635 -0.0125 12 6 1.4725 -4.9838 -0.0801 13 6 0.5875 -4.9889 -1.3286 14 7 -0.3461 -3.8568 -1.2729 15 6 -1.2491 -3.9058 -2.3227 16 7 -1.3532 -2.8617 -3.1357 17 6 -2.1958 -2.8598 -4.1475 18 6 -3.0064 -3.9914 -4.3731 19 7 -3.9275 -4.2184 -5.3272 20 6 -4.5390 -5.3431 -5.3177 21 16 -3.9742 -6.3404 -3.9838 22 6 -2.8614 -5.0696 -3.4886 23 7 -1.9809 -4.9926 -2.4924 24 6 0.3724 -2.5763 -1.2560 25 1 -0.4850 0.8401 -0.0004 26 1 2.8984 -3.5795 -0.8811 27 1 2.8435 -3.6373 0.8983 28 1 0.8491 -5.0859 0.8083 29 1 2.1759 -5.8150 -0.1292 30 1 0.0252 -5.9216 -1.3714 31 1 1.2127 -4.9006 -2.2171 32 1 -2.2653 -2.0005 -4.7980 33 1 -5.2959 -5.6383 -6.0294 34 1 -0.3463 -1.7568 -1.2461 35 1 0.9984 -2.4994 -2.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = 95.398985 kcal Electronic energy + Delta-G solvation = -20596.023980 eV Core-core repulsion = 17528.102925 eV Total energy + Delta-G solvation = -3067.921055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34008 -38.95270 -37.30526 -33.85718 -33.49388 -32.38700 -29.71916 -29.41266 -25.78832 -25.19496 -24.44307 -23.33920 -21.67247 -21.43753 -19.14086 -18.54495 -17.71963 -17.23348 -16.23998 -15.64877 -15.51574 -14.56234 -14.54090 -14.28450 -14.05716 -13.81675 -13.41065 -12.77791 -12.61028 -12.43150 -12.29487 -11.94470 -11.37260 -11.34447 -10.97364 -10.86773 -10.56151 -10.28759 -10.28028 -9.97388 -9.84934 -9.41755 -9.17694 -8.99619 -8.96281 -8.81567 -8.40063 -7.79476 -6.03765 -4.11354 0.21736 0.84975 0.98757 1.51502 2.22764 3.30366 3.36132 3.37854 3.49840 3.77437 3.83473 4.25750 4.39755 4.44921 4.81628 5.13612 5.28963 5.42681 5.47100 5.59397 5.74593 5.88162 6.02440 6.29508 6.34450 6.54291 6.59941 6.70582 6.78946 6.91593 7.00513 7.18482 7.33849 7.62814 7.73620 7.89033 8.03723 8.23186 8.41056 8.92532 9.54382 11.02038 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.004553 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.179935 B = 6148.133471 C = 7125.021830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.072 3.928 14 N -0.451 5.451 15 C 0.531 3.469 16 N -0.519 5.519 17 C 0.260 3.740 18 C -0.085 4.085 19 N -0.429 5.429 20 C 0.076 3.924 21 S 0.088 5.912 22 C 0.105 3.895 23 N -0.510 5.510 24 C 0.070 3.930 25 H 0.263 0.737 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.182 0.818 33 H 0.213 0.787 34 H 0.124 0.876 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -11.515 -9.466 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.054 4.054 14 N -0.168 5.168 15 C 0.173 3.827 16 N -0.237 5.237 17 C 0.079 3.921 18 C -0.211 4.211 19 N -0.140 5.140 20 C -0.232 4.232 21 S 0.334 5.666 22 C -0.155 4.155 23 N -0.233 5.233 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.199 0.801 33 H 0.229 0.771 34 H 0.142 0.858 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.821 -12.022 -8.176 16.060 hybrid contribution 0.466 1.681 -1.140 2.084 sum -6.355 -10.341 -9.316 15.301 Atomic orbital electron populations 1.69843 1.05869 1.26829 1.49691 1.25008 0.94861 0.99213 0.94688 0.86640 0.79604 0.83044 0.78623 1.20240 1.21259 1.20238 1.21064 0.92919 0.90113 1.51557 0.92337 1.18779 0.92160 0.92228 0.93652 0.94571 1.21752 0.98624 0.94306 1.00660 1.21674 0.97812 0.98914 0.97087 1.22147 0.92722 0.91889 0.98667 1.58622 1.17750 1.08987 1.31414 1.21424 0.91815 0.83214 0.86228 1.68513 1.21314 1.29257 1.04601 1.23077 0.84171 0.93872 0.90981 1.20688 1.03699 0.99431 0.97261 1.65979 1.06452 1.19578 1.21953 1.28973 1.02779 0.91108 1.00352 1.85067 1.35288 1.17680 1.28575 1.24577 0.98621 0.96744 0.95534 1.67465 1.08417 1.27560 1.19905 1.22783 0.97859 0.85625 0.99132 0.92710 0.93325 0.92626 0.91275 0.92046 0.90148 0.94212 0.80147 0.77115 0.85788 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.94 11.33 55.43 0.63 -24.32 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.84 8.57 -34.44 -0.30 -14.13 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.12 -2.33 5.23 -26.61 -0.14 -2.47 16 12 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 13 C 0.07 1.29 5.33 -3.83 -0.02 1.27 16 14 N -0.45 -9.60 4.72 -175.42 -0.83 -10.43 16 15 C 0.53 10.86 7.19 -322.76 -2.32 8.54 16 16 N -0.52 -10.29 8.61 -13.43 -0.12 -10.40 16 17 C 0.26 4.22 11.38 -16.57 -0.19 4.03 16 18 C -0.08 -1.32 7.01 -84.88 -0.60 -1.92 16 19 N -0.43 -5.67 10.56 -11.56 -0.12 -5.79 16 20 C 0.08 0.74 12.40 51.18 0.63 1.37 16 21 S 0.09 1.01 23.39 -107.50 -2.51 -1.51 16 22 C 0.10 1.71 7.75 -16.23 -0.13 1.59 16 23 N -0.51 -9.66 9.67 -12.57 -0.12 -9.78 16 24 C 0.07 1.68 3.68 -3.84 -0.01 1.67 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.21 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.12 3.35 5.63 -51.93 -0.29 3.06 16 35 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -30.49 303.62 -11.08 -41.57 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.03 Total: -0.29 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.53 Total: 0.47 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.56 Total: -60.72 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.49 -11.08 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.966 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds