Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09002 * 109.49975 * 299.72299 * 9 7 2 11 11 C 1.53115 * 109.49999 * 179.64250 * 9 7 2 12 12 C 1.53126 * 109.15430 * 182.44433 * 11 9 7 13 13 C 1.53038 * 109.31277 * 57.59453 * 12 11 9 14 14 N 1.46844 * 109.52060 * 300.84155 * 13 12 11 15 15 C 1.38559 * 110.99813 * 185.83920 * 14 13 12 16 16 N 1.32734 * 119.17042 * 235.78769 * 15 14 13 17 17 C 1.31667 * 121.46755 * 179.97438 * 16 15 14 18 18 C 1.41015 * 119.31718 * 0.02562 * 17 16 15 19 19 N 1.34546 * 129.96723 * 179.97438 * 18 17 16 20 20 C 1.28027 * 118.02657 * 180.02562 * 19 18 17 21 21 S 1.75863 * 110.51680 * 359.97438 * 20 19 18 22 22 C 1.40207 * 117.17386 * 359.97438 * 18 17 16 23 23 N 1.32118 * 119.16643 * 55.52026 * 15 14 13 24 24 C 1.46843 * 111.20001 * 61.74105 * 14 13 12 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.52389 * 302.30469 * 11 9 7 27 27 H 1.08997 * 109.52669 * 62.50245 * 11 9 7 28 28 H 1.09005 * 109.47292 * 297.65139 * 12 11 9 29 29 H 1.09001 * 109.50194 * 177.55892 * 12 11 9 30 30 H 1.08998 * 109.45892 * 180.82573 * 13 12 11 31 31 H 1.08998 * 109.45385 * 60.85107 * 13 12 11 32 32 H 1.08002 * 120.34303 * 180.02562 * 17 16 15 33 33 H 1.08009 * 124.74328 * 179.97438 * 20 19 18 34 34 H 1.09001 * 109.46028 * 178.24032 * 24 14 13 35 35 H 1.09000 * 109.45978 * 58.27557 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6240 -2.5614 0.8842 11 6 2.2453 -3.6635 -0.0125 12 6 1.4725 -4.9838 -0.0801 13 6 0.5875 -4.9889 -1.3286 14 7 -0.3461 -3.8568 -1.2729 15 6 -1.2491 -3.9058 -2.3227 16 7 -1.3532 -2.8617 -3.1357 17 6 -2.1958 -2.8598 -4.1475 18 6 -3.0064 -3.9914 -4.3731 19 7 -3.9275 -4.2184 -5.3272 20 6 -4.5390 -5.3431 -5.3177 21 16 -3.9742 -6.3404 -3.9838 22 6 -2.8614 -5.0696 -3.4886 23 7 -1.9809 -4.9926 -2.4924 24 6 0.3724 -2.5763 -1.2560 25 1 -0.4850 0.8401 -0.0004 26 1 2.8984 -3.5795 -0.8811 27 1 2.8435 -3.6373 0.8983 28 1 0.8491 -5.0859 0.8083 29 1 2.1759 -5.8150 -0.1292 30 1 0.0252 -5.9216 -1.3714 31 1 1.2127 -4.9006 -2.2171 32 1 -2.2653 -2.0005 -4.7980 33 1 -5.2959 -5.6383 -6.0294 34 1 -0.3463 -1.7568 -1.2461 35 1 0.9984 -2.4994 -2.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = 76.184208 kcal Electronic energy + Delta-G solvation = -20596.857195 eV Core-core repulsion = 17528.102925 eV Total energy + Delta-G solvation = -3068.754270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.62656 -40.33110 -38.64342 -35.54423 -34.91388 -34.05804 -31.49481 -30.68815 -27.31396 -26.72865 -25.91249 -24.68392 -23.24709 -22.79679 -20.67227 -19.86118 -19.17878 -18.49836 -18.05797 -17.00022 -16.86952 -16.41696 -15.74439 -15.58529 -15.33055 -15.17598 -14.98444 -14.47249 -14.15479 -13.96939 -13.65602 -13.46673 -12.86965 -12.71798 -12.64955 -12.54076 -12.27803 -12.20227 -11.85537 -11.55293 -11.01473 -10.94684 -10.90304 -10.81243 -10.43704 -10.20552 -9.94749 -9.22716 -8.09560 -6.25006 -0.92965 -0.28857 -0.20494 0.54127 1.14810 1.43365 1.44599 1.52351 2.11683 2.44109 2.48853 2.75392 3.02429 3.15646 3.25521 3.69228 3.98784 4.00351 4.04435 4.28096 4.44812 4.51816 4.72398 4.77525 4.81564 4.91226 4.99230 5.15829 5.22727 5.28474 5.42601 5.58483 5.64363 5.91621 6.06824 6.12677 6.32958 6.36558 6.84708 6.91899 7.44374 8.94671 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.004553 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.179935 B = 6148.133471 C = 7125.021830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.000 1.000 11 C -0.109 4.109 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.468 5.468 15 C 0.505 3.495 16 N -0.554 5.554 17 C 0.247 3.753 18 C -0.074 4.074 19 N -0.456 5.456 20 C 0.114 3.886 21 S 0.141 5.859 22 C 0.060 3.940 23 N -0.519 5.519 24 C 0.098 3.902 25 H 0.261 0.739 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.207 0.793 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -13.310 -11.233 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.018 0.982 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.052 4.052 14 N -0.186 5.186 15 C 0.146 3.854 16 N -0.273 5.273 17 C 0.068 3.932 18 C -0.200 4.200 19 N -0.168 5.168 20 C -0.193 4.193 21 S 0.388 5.612 22 C -0.198 4.198 23 N -0.242 5.242 24 C -0.028 4.028 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.223 0.777 33 H 0.286 0.714 34 H 0.106 0.894 35 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -7.851 -13.853 -9.972 18.788 hybrid contribution 0.521 2.070 -0.786 2.275 sum -7.330 -11.783 -10.757 17.558 Atomic orbital electron populations 1.70017 1.07312 1.27290 1.50588 1.25791 0.95581 1.02568 0.94386 0.85648 0.78376 0.78935 0.78924 1.19557 1.21180 1.19422 1.21459 0.93227 0.91484 1.51323 0.92175 1.18735 0.92684 0.93508 0.92338 0.98224 1.21633 0.97834 0.94213 1.00999 1.21638 0.97966 0.98441 0.96453 1.22236 0.92597 0.91397 0.99009 1.58613 1.18339 1.08365 1.33310 1.21339 0.92586 0.84385 0.87062 1.68438 1.23163 1.29745 1.05909 1.23483 0.83942 0.95282 0.90445 1.20832 1.03225 0.98780 0.97183 1.66092 1.07383 1.21347 1.21956 1.30143 1.00954 0.89037 0.99136 1.84969 1.32603 1.15581 1.28061 1.25318 0.99566 0.99402 0.95532 1.67455 1.08887 1.26968 1.20860 1.22142 0.96497 0.86442 0.97764 0.93022 0.93107 0.92020 0.91752 0.88037 0.88880 0.94302 0.77687 0.71420 0.89367 0.96737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.93 11.33 21.45 0.24 -53.68 16 2 C 0.02 0.91 5.30 84.66 0.45 1.36 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.54 -29.66 8.57 25.60 0.22 -29.44 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.05 2.38 2.26 -11.49 -0.03 2.36 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.11 -4.44 5.23 30.67 0.16 -4.28 16 12 C -0.11 -3.62 6.09 30.65 0.19 -3.43 16 13 C 0.07 2.66 5.33 86.33 0.46 3.12 16 14 N -0.47 -20.86 4.72 -708.92 -3.34 -24.20 16 15 C 0.50 21.51 7.19 261.47 1.88 23.39 16 16 N -0.55 -23.09 8.61 -196.41 -1.69 -24.78 16 17 C 0.25 8.19 11.38 85.40 0.97 9.17 16 18 C -0.07 -2.25 7.01 39.89 0.28 -1.97 16 19 N -0.46 -10.70 10.56 -190.41 -2.01 -12.71 16 20 C 0.11 1.68 12.40 130.80 1.62 3.30 16 21 S 0.14 2.75 23.39 -56.49 -1.32 1.43 16 22 C 0.06 1.90 7.75 84.97 0.66 2.56 16 23 N -0.52 -19.85 9.67 -193.68 -1.87 -21.72 16 24 C 0.10 4.94 3.68 86.33 0.32 5.26 16 25 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 30 H 0.09 3.13 7.54 -2.39 -0.02 3.11 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.21 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.27 0.64 8.06 -2.91 -0.02 0.61 16 34 H 0.09 5.11 5.63 -2.39 -0.01 5.09 16 35 H 0.01 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -71.03 303.62 0.32 -70.71 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.11 Total: 7.73 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.18 Total: 11.38 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -8.68 Total: -137.11 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.32 Total: 1.43 kcal Total: -71.03 0.32 -70.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.891 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds