Wall clock time and date at job start Tue Mar 31 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09002 * 109.53920 * 72.72704 * 3 2 1 5 5 C 1.53114 * 109.50574 * 312.62577 * 3 2 1 6 6 C 1.53116 * 109.16194 * 182.40693 * 5 3 2 7 7 C 1.53032 * 109.28173 * 57.65374 * 6 5 3 8 8 N 1.46849 * 109.52531 * 300.82477 * 7 6 5 9 9 C 1.38405 * 111.00222 * 185.84036 * 8 7 6 10 10 N 1.32745 * 119.43400 * 298.44317 * 9 8 7 11 11 C 1.31472 * 121.74445 * 179.97438 * 10 9 8 12 12 C 1.40801 * 120.38390 * 0.02562 * 11 10 9 13 13 C 1.41190 * 120.56145 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99753 * 151.83901 * 13 12 11 15 15 C 1.39862 * 120.00170 * 331.83205 * 13 12 11 16 16 N 1.30908 * 120.00081 * 161.35347 * 15 13 12 17 17 Si 1.86795 * 120.00280 * 341.35783 * 15 13 12 18 18 H 1.48506 * 109.47047 * 90.54007 * 17 15 13 19 19 H 1.48494 * 109.47435 * 210.54395 * 17 15 13 20 20 H 1.48507 * 109.47029 * 330.54529 * 17 15 13 21 21 C 1.41283 * 118.86781 * 359.97438 * 12 11 10 22 22 C 1.36667 * 118.40355 * 359.74565 * 21 12 11 23 23 Cl 1.73600 * 120.26374 * 180.23824 * 22 21 12 24 24 C 1.46847 * 111.19871 * 61.73594 * 8 7 6 25 25 H 4.18848 * 15.02296 * 0.02562 * 4 2 1 26 26 H 1.08994 * 109.52397 * 302.31270 * 5 3 2 27 27 H 1.09002 * 109.52139 * 62.43460 * 5 3 2 28 28 H 1.09004 * 109.50379 * 297.71278 * 6 5 3 29 29 H 1.09003 * 109.50474 * 177.60129 * 6 5 3 30 30 H 1.08998 * 109.46569 * 180.80687 * 7 6 5 31 31 H 1.09003 * 109.46172 * 60.83687 * 7 6 5 32 32 H 1.07988 * 119.81051 * 180.02562 * 11 10 9 33 33 H 0.96994 * 119.99947 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.79618 * 180.02562 * 21 12 11 35 35 H 1.08994 * 109.46205 * 58.27610 * 24 8 7 36 36 H 1.08994 * 109.46176 * 178.24715 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0107 -0.3042 -0.9809 5 6 3.1577 -0.9765 1.0619 6 6 4.6876 -0.9252 1.0966 7 6 5.1387 0.5084 1.3850 8 7 4.6246 1.4041 0.3410 9 6 5.1215 2.6862 0.4986 10 7 4.8454 3.3611 1.6078 11 6 5.2940 4.5811 1.8050 12 6 6.0901 5.2133 0.8308 13 6 6.5734 6.5235 1.0385 14 1 7.4961 6.8387 0.5738 15 6 5.8574 7.4133 1.8457 16 7 6.4495 8.4720 2.3379 17 14 4.0562 7.0911 2.2215 18 1 3.9464 6.2836 3.4630 19 1 3.3504 8.3842 2.4081 20 1 3.4400 6.3492 1.0923 21 6 6.3969 4.5142 -0.3580 22 6 5.9103 3.2462 -0.5105 23 17 6.2629 2.3410 -1.9492 24 6 3.1562 1.4075 0.3202 25 1 -1.0500 0.0004 -0.0004 26 1 2.7616 -0.6946 2.0374 27 1 2.8316 -1.9868 0.8146 28 1 5.0844 -1.2447 0.1330 29 1 5.0563 -1.5873 1.8801 30 1 6.2278 0.5512 1.3962 31 1 4.7531 0.8223 2.3550 32 1 5.0506 5.1014 2.7195 33 1 5.9528 9.0893 2.8974 34 1 7.0053 4.9691 -1.1257 35 1 2.7799 1.7172 1.2951 36 1 2.8055 2.1032 -0.4420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167007858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:06 Heat of formation + Delta-G solvation = 71.379859 kcal Electronic energy + Delta-G solvation = -20461.294355 eV Core-core repulsion = 17357.995295 eV Total energy + Delta-G solvation = -3103.299060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 13.02 seconds Orbital eigenvalues (eV) -39.73112 -38.03031 -35.67826 -34.72524 -33.67385 -32.38484 -31.18939 -29.99505 -29.66452 -25.73427 -23.58345 -23.29028 -22.61965 -21.13830 -19.61543 -18.15739 -17.92839 -16.62958 -16.05382 -15.07209 -14.93249 -14.58236 -14.44150 -14.16834 -13.78035 -13.39216 -13.18731 -12.76814 -12.70970 -12.23948 -12.10718 -11.60157 -11.49462 -11.17416 -11.08264 -11.01163 -10.89051 -10.70695 -10.54600 -10.36563 -10.12368 -9.95733 -9.88133 -9.52318 -8.71282 -8.57238 -7.91407 -7.76576 -7.30189 -4.82678 2.06722 2.31806 2.86458 2.90685 2.93961 3.00454 3.06209 3.11618 3.71559 4.14686 4.19165 4.57946 4.99492 5.04866 5.07774 5.16394 5.49404 5.59807 5.63143 5.73041 5.84568 5.98482 6.03064 6.08223 6.13643 6.15499 6.16252 6.30725 6.34716 6.49913 6.51857 6.67241 6.86162 7.22661 7.40777 7.45318 7.68383 7.89866 7.97968 8.26478 8.35274 9.08157 9.69275 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.005451 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.203008 B = 5135.320330 C = 5944.163360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.167 4.167 3 C 0.020 3.980 4 H 0.099 0.901 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.062 3.938 8 N -0.458 5.458 9 C 0.133 3.867 10 N -0.456 5.456 11 C -0.028 4.028 12 C 0.053 3.947 13 C -0.415 4.415 14 H 0.099 0.901 15 C 0.083 3.917 16 N -0.782 5.782 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.247 1.247 21 C -0.179 4.179 22 C 0.011 3.989 23 Cl -0.089 7.089 24 C 0.076 3.924 25 H 0.215 0.785 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.138 0.862 33 H 0.293 0.707 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -11.498 -2.183 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.167 4.167 3 C 0.002 3.998 4 H 0.117 0.883 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.065 4.065 8 N -0.180 5.180 9 C -0.094 4.094 10 N -0.166 5.166 11 C -0.193 4.193 12 C 0.047 3.953 13 C -0.443 4.443 14 H 0.117 0.883 15 C -0.140 4.140 16 N -0.404 5.404 17 Si 0.738 3.262 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.170 1.170 21 C -0.205 4.205 22 C -0.019 4.019 23 Cl -0.060 7.060 24 C -0.051 4.051 25 H 0.232 0.768 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.063 0.937 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.804 -11.901 -2.011 13.393 hybrid contribution -0.656 0.809 0.275 1.078 sum -6.460 -11.092 -1.736 12.953 Atomic orbital electron populations 1.24809 0.95814 1.01308 1.01966 1.23119 0.94275 0.99822 0.99527 1.18384 0.83702 0.96733 1.00980 0.88280 1.21564 0.96144 0.98411 0.98440 1.21603 0.94735 0.96560 1.02353 1.22044 0.99887 0.91402 0.93189 1.59482 1.06900 1.05467 1.46187 1.18408 1.06740 0.91994 0.92293 1.67155 1.19337 1.09161 1.20929 1.22490 1.05375 0.91516 0.99933 1.18555 0.91686 0.94597 0.90428 1.19492 1.07871 0.94279 1.22647 0.88265 1.26249 1.01686 0.94141 0.91890 1.69692 1.38842 1.10320 1.21529 0.86342 0.80905 0.77751 0.81231 1.18666 1.21034 1.17045 1.21015 1.07208 0.93695 0.98558 1.21078 0.99995 0.92827 0.88002 1.98277 1.93786 1.75664 1.38314 1.21946 0.87692 0.94430 1.01076 0.76827 0.91906 0.91782 0.90963 0.91476 0.91084 0.94007 0.84534 0.89634 0.85884 0.93746 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.72 19.25 29.55 0.57 -2.15 16 2 C -0.17 -2.33 12.56 -37.12 -0.47 -2.79 16 3 C 0.02 0.28 2.73 -93.33 -0.25 0.03 16 4 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 5 C -0.11 -1.32 5.24 -26.61 -0.14 -1.46 16 6 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 7 C 0.06 1.00 5.25 -3.84 -0.02 0.98 16 8 N -0.46 -8.27 3.99 -173.12 -0.69 -8.96 16 9 C 0.13 2.84 5.28 -155.06 -0.82 2.02 16 10 N -0.46 -10.45 9.66 -11.75 -0.11 -10.56 16 11 C -0.03 -0.67 8.49 -16.74 -0.14 -0.81 16 12 C 0.05 1.26 5.15 -106.65 -0.55 0.71 16 13 C -0.42 -10.26 9.59 -37.85 -0.36 -10.63 16 14 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 15 C 0.08 1.99 5.41 -17.34 -0.09 1.90 16 16 N -0.78 -18.96 13.93 55.54 0.77 -18.19 16 17 Si 0.91 19.49 24.55 -169.99 -4.17 15.32 16 18 H -0.26 -5.47 6.45 56.52 0.36 -5.10 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.25 -5.58 7.04 56.52 0.40 -5.18 16 21 C -0.18 -3.97 9.66 -38.99 -0.38 -4.34 16 22 C 0.01 0.24 6.32 -39.57 -0.25 -0.01 16 23 Cl -0.09 -1.61 28.43 -51.86 -1.47 -3.09 16 24 C 0.08 1.30 4.50 -3.83 -0.02 1.28 16 25 H 0.21 1.81 7.80 -54.09 -0.42 1.39 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 32 H 0.14 3.20 4.41 -52.49 -0.23 2.97 16 33 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 34 H 0.12 2.55 8.06 -52.48 -0.42 2.13 16 35 H 0.04 0.82 8.02 -51.93 -0.42 0.41 16 36 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -25.48 316.24 -8.46 -33.94 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.46 Total: 3.65 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.09 Total: -16.87 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.03 Total: -37.72 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.17 Total: 15.32 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.47 Total: -3.09 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.48 -8.46 -33.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167007858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.323 kcal (2) G-P(sol) polarization free energy of solvation -25.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.02 seconds