Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09002 * 109.53920 * 72.72704 * 3 2 1 5 5 C 1.53114 * 109.50574 * 312.62577 * 3 2 1 6 6 C 1.53116 * 109.16194 * 182.40693 * 5 3 2 7 7 C 1.53032 * 109.28173 * 57.65374 * 6 5 3 8 8 N 1.46849 * 109.52531 * 300.82477 * 7 6 5 9 9 C 1.38405 * 111.00222 * 185.84036 * 8 7 6 10 10 N 1.32745 * 119.43400 * 298.44317 * 9 8 7 11 11 C 1.31472 * 121.74445 * 179.97438 * 10 9 8 12 12 C 1.40801 * 120.38390 * 0.02562 * 11 10 9 13 13 C 1.41190 * 120.56145 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99753 * 151.83901 * 13 12 11 15 15 C 1.39862 * 120.00170 * 331.83205 * 13 12 11 16 16 N 1.30908 * 120.00081 * 161.35347 * 15 13 12 17 17 Si 1.86795 * 120.00280 * 341.35783 * 15 13 12 18 18 H 1.48506 * 109.47047 * 90.54007 * 17 15 13 19 19 H 1.48494 * 109.47435 * 210.54395 * 17 15 13 20 20 H 1.48507 * 109.47029 * 330.54529 * 17 15 13 21 21 C 1.41283 * 118.86781 * 359.97438 * 12 11 10 22 22 C 1.36667 * 118.40355 * 359.74565 * 21 12 11 23 23 Cl 1.73600 * 120.26374 * 180.23824 * 22 21 12 24 24 C 1.46847 * 111.19871 * 61.73594 * 8 7 6 25 25 H 4.18848 * 15.02296 * 0.02562 * 4 2 1 26 26 H 1.08994 * 109.52397 * 302.31270 * 5 3 2 27 27 H 1.09002 * 109.52139 * 62.43460 * 5 3 2 28 28 H 1.09004 * 109.50379 * 297.71278 * 6 5 3 29 29 H 1.09003 * 109.50474 * 177.60129 * 6 5 3 30 30 H 1.08998 * 109.46569 * 180.80687 * 7 6 5 31 31 H 1.09003 * 109.46172 * 60.83687 * 7 6 5 32 32 H 1.07988 * 119.81051 * 180.02562 * 11 10 9 33 33 H 0.96994 * 119.99947 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.79618 * 180.02562 * 21 12 11 35 35 H 1.08994 * 109.46205 * 58.27610 * 24 8 7 36 36 H 1.08994 * 109.46176 * 178.24715 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0107 -0.3042 -0.9809 5 6 3.1577 -0.9765 1.0619 6 6 4.6876 -0.9252 1.0966 7 6 5.1387 0.5084 1.3850 8 7 4.6246 1.4041 0.3410 9 6 5.1215 2.6862 0.4986 10 7 4.8454 3.3611 1.6078 11 6 5.2940 4.5811 1.8050 12 6 6.0901 5.2133 0.8308 13 6 6.5734 6.5235 1.0385 14 1 7.4961 6.8387 0.5738 15 6 5.8574 7.4133 1.8457 16 7 6.4495 8.4720 2.3379 17 14 4.0562 7.0911 2.2215 18 1 3.9464 6.2836 3.4630 19 1 3.3504 8.3842 2.4081 20 1 3.4400 6.3492 1.0923 21 6 6.3969 4.5142 -0.3580 22 6 5.9103 3.2462 -0.5105 23 17 6.2629 2.3410 -1.9492 24 6 3.1562 1.4075 0.3202 25 1 -1.0500 0.0004 -0.0004 26 1 2.7616 -0.6946 2.0374 27 1 2.8316 -1.9868 0.8146 28 1 5.0844 -1.2447 0.1330 29 1 5.0563 -1.5873 1.8801 30 1 6.2278 0.5512 1.3962 31 1 4.7531 0.8223 2.3550 32 1 5.0506 5.1014 2.7195 33 1 5.9528 9.0893 2.8974 34 1 7.0053 4.9691 -1.1257 35 1 2.7799 1.7172 1.2951 36 1 2.8055 2.1032 -0.4420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167007858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = 58.691743 kcal Electronic energy + Delta-G solvation = -20461.844553 eV Core-core repulsion = 17357.995295 eV Total energy + Delta-G solvation = -3103.849258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.31485 -39.49316 -37.30142 -36.26276 -35.17188 -33.64917 -32.90862 -31.47103 -31.01717 -27.36194 -25.04280 -24.56030 -24.34305 -22.73498 -20.87094 -19.80022 -19.23128 -18.12009 -17.71028 -16.79375 -16.28414 -16.19226 -15.79942 -15.47174 -15.01886 -14.96259 -14.65037 -14.35599 -14.23883 -13.83435 -13.41758 -13.27909 -12.91443 -12.87429 -12.68353 -12.62051 -12.13721 -11.97185 -11.81739 -11.78950 -11.65958 -11.29202 -11.06799 -10.92147 -10.43930 -10.32908 -9.52616 -9.46973 -9.11427 -6.70177 0.28735 0.51744 1.19913 1.29421 1.36743 1.37535 1.84566 1.92048 1.97303 2.37197 2.83717 3.22558 3.52126 3.82497 3.90706 3.99653 4.07606 4.31126 4.33676 4.38236 4.39291 4.57287 4.66202 4.72973 4.79346 4.88680 4.93018 5.05121 5.09970 5.11958 5.17081 5.22557 5.41479 5.46949 5.62737 5.99763 6.06124 6.19993 6.47708 6.57857 6.71238 7.27345 7.94006 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.005451 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.203008 B = 5135.320330 C = 5944.163360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.213 4.213 3 C 0.029 3.971 4 H 0.104 0.896 5 C -0.103 4.103 6 C -0.104 4.104 7 C 0.061 3.939 8 N -0.458 5.458 9 C 0.147 3.853 10 N -0.469 5.469 11 C -0.042 4.042 12 C 0.043 3.957 13 C -0.445 4.445 14 H 0.079 0.921 15 C 0.061 3.939 16 N -0.812 5.812 17 Si 0.956 3.044 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.268 1.268 21 C -0.179 4.179 22 C 0.001 3.999 23 Cl -0.056 7.056 24 C 0.081 3.919 25 H 0.248 0.752 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.136 0.864 33 H 0.303 0.697 34 H 0.134 0.866 35 H 0.025 0.975 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -13.927 -2.673 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.214 4.214 3 C 0.011 3.989 4 H 0.122 0.878 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.066 4.066 8 N -0.180 5.180 9 C -0.083 4.083 10 N -0.180 5.180 11 C -0.205 4.205 12 C 0.038 3.962 13 C -0.473 4.473 14 H 0.097 0.903 15 C -0.159 4.159 16 N -0.435 5.435 17 Si 0.780 3.220 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.206 4.206 22 C -0.030 4.030 23 Cl -0.028 7.028 24 C -0.046 4.046 25 H 0.264 0.736 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.153 0.847 33 H 0.115 0.885 34 H 0.152 0.848 35 H 0.043 0.957 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.280 -14.312 -2.483 16.248 hybrid contribution -0.225 1.363 0.299 1.414 sum -7.506 -12.949 -2.184 15.125 Atomic orbital electron populations 1.25685 0.96702 0.99078 1.00039 1.23321 0.94828 1.01833 1.01380 1.18252 0.84236 0.94679 1.01755 0.87788 1.21553 0.95786 0.99181 0.97513 1.21571 0.94892 0.94013 1.03702 1.22131 0.99424 0.93279 0.91815 1.59636 1.07627 1.03886 1.46846 1.18908 1.05024 0.92920 0.91437 1.67225 1.19858 1.09000 1.21888 1.22515 1.05965 0.91976 1.00050 1.18637 0.92011 0.94488 0.91107 1.19440 1.08107 0.95267 1.24466 0.90305 1.26672 1.03843 0.93841 0.91562 1.69685 1.40086 1.11157 1.22579 0.85683 0.77845 0.78198 0.80307 1.18159 1.18890 1.19243 1.21220 1.06891 0.94148 0.98315 1.21181 0.99603 0.92856 0.89320 1.98281 1.93509 1.74765 1.36211 1.21887 0.86724 0.96614 0.99414 0.73558 0.92581 0.89323 0.90088 0.88979 0.91740 0.95550 0.84686 0.88535 0.84806 0.95692 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.27 19.25 74.32 1.43 -2.84 16 2 C -0.21 -5.48 12.56 31.13 0.39 -5.09 16 3 C 0.03 0.76 2.73 -12.55 -0.03 0.72 16 4 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 5 C -0.10 -2.24 5.24 30.67 0.16 -2.08 16 6 C -0.10 -2.27 6.09 30.64 0.19 -2.09 16 7 C 0.06 1.86 5.25 86.32 0.45 2.31 16 8 N -0.46 -16.05 3.99 -701.63 -2.80 -18.85 16 9 C 0.15 6.18 5.28 133.32 0.70 6.88 16 10 N -0.47 -21.66 9.66 -191.09 -1.85 -23.51 16 11 C -0.04 -2.04 8.49 85.37 0.73 -1.31 16 12 C 0.04 2.09 5.15 -21.18 -0.11 1.98 16 13 C -0.44 -22.78 9.59 23.39 0.22 -22.56 16 14 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 15 C 0.06 2.98 5.41 85.22 0.46 3.44 16 16 N -0.81 -40.13 13.93 21.82 0.30 -39.83 16 17 Si 0.96 40.51 24.55 68.60 1.68 42.19 16 18 H -0.26 -10.55 6.45 99.48 0.64 -9.91 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.27 -12.17 7.04 99.48 0.70 -11.47 16 21 C -0.18 -8.01 9.66 22.65 0.22 -7.79 16 22 C 0.00 0.03 6.32 22.28 0.14 0.17 16 23 Cl -0.06 -1.95 28.43 -2.72 -0.08 -2.03 16 24 C 0.08 2.71 4.50 86.33 0.39 3.10 16 25 H 0.25 3.18 7.80 -4.42 -0.03 3.15 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 31 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.14 6.44 4.41 -2.92 -0.01 6.43 16 33 H 0.30 13.34 8.30 -92.71 -0.77 12.57 16 34 H 0.13 5.57 8.06 -2.91 -0.02 5.55 16 35 H 0.02 0.92 8.02 -2.39 -0.02 0.90 16 36 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -55.35 316.24 3.62 -51.73 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.01 Total: 15.42 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 5.34 Total: -25.13 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -4.34 Total: -82.19 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.68 Total: 42.19 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -55.35 3.62 -51.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167007858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.424 kcal (2) G-P(sol) polarization free energy of solvation -55.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds