Wall clock time and date at job start Tue Mar 31 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.08996 * 109.53616 * 169.18418 * 3 2 1 5 5 C 1.53121 * 109.50036 * 289.27675 * 3 2 1 6 6 C 1.53118 * 109.15986 * 177.59650 * 5 3 2 7 7 C 1.53044 * 109.28046 * 302.34704 * 6 5 3 8 8 N 1.46851 * 109.52251 * 59.17482 * 7 6 5 9 9 C 1.38400 * 110.99761 * 174.16349 * 8 7 6 10 10 N 1.32746 * 119.44158 * 62.58422 * 9 8 7 11 11 C 1.31464 * 121.74216 * 179.69831 * 10 9 8 12 12 C 1.40791 * 120.39024 * 0.53686 * 11 10 9 13 13 C 1.41196 * 120.56979 * 179.74845 * 12 11 10 14 14 H 1.07997 * 120.00302 * 205.04186 * 13 12 11 15 15 C 1.39871 * 119.99660 * 25.04101 * 13 12 11 16 16 N 1.30908 * 119.99864 * 17.31631 * 15 13 12 17 17 Si 1.86792 * 120.00103 * 197.31159 * 15 13 12 18 18 H 1.48507 * 109.47299 * 265.08106 * 17 15 13 19 19 H 1.48499 * 109.47432 * 25.07946 * 17 15 13 20 20 H 1.48504 * 109.47104 * 145.08113 * 17 15 13 21 21 C 1.41287 * 118.86720 * 359.47978 * 12 11 10 22 22 C 1.36662 * 118.40076 * 0.24812 * 21 12 11 23 23 Cl 1.73608 * 120.26091 * 180.02562 * 22 21 12 24 24 C 1.46841 * 111.19818 * 298.26501 * 8 7 6 25 25 H 4.18838 * 15.02346 * 0.02562 * 4 2 1 26 26 H 1.08996 * 109.52720 * 297.49924 * 5 3 2 27 27 H 1.09005 * 109.52536 * 57.69297 * 5 3 2 28 28 H 1.08994 * 109.50573 * 62.29001 * 6 5 3 29 29 H 1.09001 * 109.50492 * 182.36658 * 6 5 3 30 30 H 1.09006 * 109.45889 * 299.16562 * 7 6 5 31 31 H 1.08994 * 109.46398 * 179.19783 * 7 6 5 32 32 H 1.08008 * 119.80747 * 180.26571 * 11 10 9 33 33 H 0.96994 * 120.00036 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.79749 * 180.27382 * 21 12 11 35 35 H 1.09005 * 109.45964 * 181.75812 * 24 8 7 36 36 H 1.09001 * 109.46423 * 301.71987 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0100 1.0098 -0.1928 5 6 3.1573 -0.4756 1.3625 6 6 4.6873 -0.5293 1.3342 7 6 5.1396 -1.4586 0.2055 8 7 4.6257 -0.9598 -1.0765 9 6 5.1235 -1.7023 -2.1331 10 7 4.8313 -2.9944 -2.2173 11 6 5.2750 -3.7409 -3.2044 12 6 6.0924 -3.1843 -4.2065 13 6 6.5753 -3.9837 -5.2655 14 1 7.4818 -3.7053 -5.7823 15 6 5.8796 -5.1362 -5.6451 16 7 4.6350 -5.3013 -5.2746 17 14 6.7265 -6.4397 -6.6809 18 1 6.4197 -6.2086 -8.1154 19 1 8.1944 -6.3630 -6.4701 20 1 6.2385 -7.7840 -6.2807 21 6 6.4166 -1.8109 -4.1376 22 6 5.9250 -1.0786 -3.0937 23 17 6.2925 0.6131 -2.9620 24 6 3.1574 -0.9440 -1.0900 25 1 -1.0500 -0.0009 0.0007 26 1 2.8315 0.2187 2.1369 27 1 2.7618 -1.4693 1.5730 28 1 5.0835 0.4714 1.1625 29 1 5.0558 -0.9078 2.2877 30 1 4.7545 -2.4624 0.3852 31 1 6.2287 -1.4879 0.1736 32 1 5.0144 -4.7883 -3.2445 33 1 4.1526 -6.1006 -5.5376 34 1 7.0375 -1.3507 -4.8920 35 1 2.8068 -0.5995 -2.0629 36 1 2.7816 -1.9502 -0.9042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167007864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:29 Heat of formation + Delta-G solvation = 67.700322 kcal Electronic energy + Delta-G solvation = -20330.754106 eV Core-core repulsion = 17227.295490 eV Total energy + Delta-G solvation = -3103.458617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.52867 -37.81951 -35.50615 -34.68318 -33.56449 -32.17992 -30.93989 -29.85437 -29.01585 -25.72491 -23.62549 -23.21841 -22.10625 -21.09349 -19.50627 -18.01114 -17.71788 -16.30661 -15.87820 -14.90950 -14.80828 -14.45896 -14.36120 -14.01821 -13.66254 -13.23168 -13.03334 -12.53446 -12.29964 -12.02379 -11.77872 -11.45166 -11.42641 -11.27398 -11.11859 -10.93488 -10.76146 -10.61992 -10.47563 -10.44481 -10.04970 -9.85968 -9.78010 -9.54544 -8.50066 -8.34980 -7.74062 -7.51020 -7.11627 -4.68456 2.33711 2.62490 2.92271 2.93709 2.96497 2.98802 3.01560 3.22699 3.71665 4.26695 4.34454 4.69188 5.09353 5.14422 5.24943 5.33265 5.60023 5.70361 5.82080 5.89322 5.98092 6.08364 6.17467 6.22994 6.25217 6.28624 6.42484 6.45369 6.56462 6.63310 6.84122 6.86625 6.97522 7.47316 7.59191 7.70411 7.77032 8.04296 8.15906 8.46272 8.53932 9.40779 9.84324 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004610 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.385607 B = 6071.917412 C = 6730.363699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C 0.020 3.980 4 H 0.098 0.902 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.063 3.937 8 N -0.459 5.459 9 C 0.133 3.867 10 N -0.477 5.477 11 C 0.052 3.948 12 C 0.074 3.926 13 C -0.437 4.437 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.779 5.779 17 Si 0.917 3.083 18 H -0.267 1.267 19 H -0.257 1.257 20 H -0.272 1.272 21 C -0.197 4.197 22 C 0.003 3.997 23 Cl -0.099 7.099 24 C 0.078 3.922 25 H 0.215 0.785 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.289 0.711 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 4.822 6.927 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.166 4.166 3 C 0.001 3.999 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.153 4.153 7 C -0.064 4.064 8 N -0.181 5.181 9 C -0.092 4.092 10 N -0.188 5.188 11 C -0.115 4.115 12 C 0.069 3.931 13 C -0.466 4.466 14 H 0.105 0.895 15 C -0.147 4.147 16 N -0.403 5.403 17 Si 0.740 3.260 18 H -0.192 1.192 19 H -0.181 1.181 20 H -0.197 1.197 21 C -0.223 4.223 22 C -0.027 4.027 23 Cl -0.070 7.070 24 C -0.049 4.049 25 H 0.231 0.769 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.273 4.981 7.536 9.315 hybrid contribution 0.233 -0.923 -1.186 1.521 sum -2.040 4.058 6.350 7.807 Atomic orbital electron populations 1.24794 0.95799 1.02012 1.01466 1.23135 0.94289 0.99476 0.99691 1.18395 0.83679 1.01459 0.96332 0.88388 1.21562 0.96150 1.01376 0.95431 1.21604 0.94747 1.00971 0.97930 1.22020 0.99735 0.96341 0.88331 1.59478 1.06800 1.50568 1.01262 1.18462 1.06004 0.88512 0.96217 1.67351 1.20910 1.05398 1.25143 1.22872 0.99909 0.99138 0.89611 1.18499 0.91201 0.90308 0.93084 1.19568 1.08547 1.05119 1.13403 0.89519 1.26045 0.94157 0.98716 0.95790 1.69792 1.08265 1.26473 1.35788 0.86136 0.80881 0.79182 0.79776 1.19225 1.18077 1.19661 1.20991 1.08144 0.93786 0.99375 1.21033 1.00696 0.83601 0.97347 1.98260 1.93639 1.17092 1.98048 1.21907 0.87803 0.97661 0.97568 0.76854 0.91879 0.91900 0.91054 0.91590 0.94107 0.91276 0.82906 0.90009 0.86663 0.91140 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.91 19.25 29.55 0.57 -2.34 16 2 C -0.17 -2.45 12.56 -37.13 -0.47 -2.92 16 3 C 0.02 0.29 2.73 -93.33 -0.25 0.04 16 4 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 5 C -0.11 -1.41 5.24 -26.61 -0.14 -1.55 16 6 C -0.11 -1.51 6.09 -26.65 -0.16 -1.68 16 7 C 0.06 1.07 5.26 -3.83 -0.02 1.05 16 8 N -0.46 -8.80 3.99 -173.11 -0.69 -9.49 16 9 C 0.13 2.99 5.28 -155.06 -0.82 2.17 16 10 N -0.48 -11.56 9.66 -11.75 -0.11 -11.67 16 11 C 0.05 1.31 9.88 -16.74 -0.17 1.14 16 12 C 0.07 1.85 5.58 -106.65 -0.59 1.26 16 13 C -0.44 -10.57 9.06 -37.85 -0.34 -10.91 16 14 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 15 C 0.07 1.67 5.15 -17.33 -0.09 1.58 16 16 N -0.78 -18.55 10.98 55.54 0.61 -17.94 16 17 Si 0.92 16.98 29.59 -169.99 -5.03 11.95 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 C -0.20 -4.61 9.66 -38.99 -0.38 -4.98 16 22 C 0.00 0.08 6.32 -39.57 -0.25 -0.17 16 23 Cl -0.10 -1.90 28.43 -51.86 -1.47 -3.38 16 24 C 0.08 1.43 4.48 -3.84 -0.02 1.41 16 25 H 0.21 1.96 7.80 -54.09 -0.42 1.54 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.75 8.02 -51.93 -0.42 0.33 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.15 3.92 6.19 -52.48 -0.32 3.60 16 33 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 34 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -25.68 321.72 -9.49 -35.16 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.51 Total: 6.41 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.13 Total: -15.90 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.19 Total: -39.10 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -1.47 Total: -3.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.68 -9.49 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167007864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.862 kcal (2) G-P(sol) polarization free energy of solvation -25.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds