Wall clock time and date at job start Tue Mar 31 2020 07:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.08996 * 109.53616 * 169.18418 * 3 2 1 5 5 C 1.53121 * 109.50036 * 289.27675 * 3 2 1 6 6 C 1.53118 * 109.15986 * 177.59650 * 5 3 2 7 7 C 1.53044 * 109.28046 * 302.34704 * 6 5 3 8 8 N 1.46851 * 109.52251 * 59.17482 * 7 6 5 9 9 C 1.38400 * 110.99761 * 174.16349 * 8 7 6 10 10 N 1.32746 * 119.44158 * 62.58422 * 9 8 7 11 11 C 1.31464 * 121.74216 * 179.69831 * 10 9 8 12 12 C 1.40791 * 120.39024 * 0.53686 * 11 10 9 13 13 C 1.41196 * 120.56979 * 179.74845 * 12 11 10 14 14 H 1.07997 * 120.00302 * 205.04186 * 13 12 11 15 15 C 1.39871 * 119.99660 * 25.04101 * 13 12 11 16 16 N 1.30908 * 119.99864 * 17.31631 * 15 13 12 17 17 Si 1.86792 * 120.00103 * 197.31159 * 15 13 12 18 18 H 1.48507 * 109.47299 * 265.08106 * 17 15 13 19 19 H 1.48499 * 109.47432 * 25.07946 * 17 15 13 20 20 H 1.48504 * 109.47104 * 145.08113 * 17 15 13 21 21 C 1.41287 * 118.86720 * 359.47978 * 12 11 10 22 22 C 1.36662 * 118.40076 * 0.24812 * 21 12 11 23 23 Cl 1.73608 * 120.26091 * 180.02562 * 22 21 12 24 24 C 1.46841 * 111.19818 * 298.26501 * 8 7 6 25 25 H 4.18838 * 15.02346 * 0.02562 * 4 2 1 26 26 H 1.08996 * 109.52720 * 297.49924 * 5 3 2 27 27 H 1.09005 * 109.52536 * 57.69297 * 5 3 2 28 28 H 1.08994 * 109.50573 * 62.29001 * 6 5 3 29 29 H 1.09001 * 109.50492 * 182.36658 * 6 5 3 30 30 H 1.09006 * 109.45889 * 299.16562 * 7 6 5 31 31 H 1.08994 * 109.46398 * 179.19783 * 7 6 5 32 32 H 1.08008 * 119.80747 * 180.26571 * 11 10 9 33 33 H 0.96994 * 120.00036 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.79749 * 180.27382 * 21 12 11 35 35 H 1.09005 * 109.45964 * 181.75812 * 24 8 7 36 36 H 1.09001 * 109.46423 * 301.71987 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0100 1.0098 -0.1928 5 6 3.1573 -0.4756 1.3625 6 6 4.6873 -0.5293 1.3342 7 6 5.1396 -1.4586 0.2055 8 7 4.6257 -0.9598 -1.0765 9 6 5.1235 -1.7023 -2.1331 10 7 4.8313 -2.9944 -2.2173 11 6 5.2750 -3.7409 -3.2044 12 6 6.0924 -3.1843 -4.2065 13 6 6.5753 -3.9837 -5.2655 14 1 7.4818 -3.7053 -5.7823 15 6 5.8796 -5.1362 -5.6451 16 7 4.6350 -5.3013 -5.2746 17 14 6.7265 -6.4397 -6.6809 18 1 6.4197 -6.2086 -8.1154 19 1 8.1944 -6.3630 -6.4701 20 1 6.2385 -7.7840 -6.2807 21 6 6.4166 -1.8109 -4.1376 22 6 5.9250 -1.0786 -3.0937 23 17 6.2925 0.6131 -2.9620 24 6 3.1574 -0.9440 -1.0900 25 1 -1.0500 -0.0009 0.0007 26 1 2.8315 0.2187 2.1369 27 1 2.7618 -1.4693 1.5730 28 1 5.0835 0.4714 1.1625 29 1 5.0558 -0.9078 2.2877 30 1 4.7545 -2.4624 0.3852 31 1 6.2287 -1.4879 0.1736 32 1 5.0144 -4.7883 -3.2445 33 1 4.1526 -6.1006 -5.5376 34 1 7.0375 -1.3507 -4.8920 35 1 2.8068 -0.5995 -2.0629 36 1 2.7816 -1.9502 -0.9042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167007864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:25 Heat of formation + Delta-G solvation = 56.001962 kcal Electronic energy + Delta-G solvation = -20331.261385 eV Core-core repulsion = 17227.295490 eV Total energy + Delta-G solvation = -3103.965896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -41.14440 -39.36427 -37.20507 -36.26240 -35.03536 -33.49381 -32.73534 -31.12181 -30.72304 -27.41166 -25.12730 -24.53700 -23.91814 -22.72094 -20.84164 -19.53252 -19.16963 -17.79189 -17.62107 -16.63527 -16.22850 -16.06837 -15.74039 -15.35098 -14.96249 -14.72337 -14.55682 -14.14427 -13.85201 -13.53915 -13.36905 -13.09536 -12.99349 -12.76752 -12.67317 -12.53001 -12.07593 -12.00560 -11.78996 -11.73769 -11.62354 -11.25895 -11.04614 -10.92531 -10.29407 -10.14501 -9.41327 -9.31663 -8.85133 -6.53819 0.54830 0.77179 1.39274 1.45917 1.48333 1.57175 1.85130 1.91911 2.15771 2.56705 2.91886 3.45400 3.55037 3.89340 3.96034 4.08075 4.21971 4.34699 4.38949 4.46981 4.58385 4.66901 4.77771 4.85468 4.90495 4.99924 5.05058 5.10070 5.11323 5.13059 5.16627 5.25016 5.45428 5.65921 5.82475 6.11754 6.21749 6.38067 6.64750 6.70471 6.75307 7.54062 8.13717 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004610 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.385607 B = 6071.917412 C = 6730.363699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.214 4.214 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.102 4.102 6 C -0.104 4.104 7 C 0.062 3.938 8 N -0.456 5.456 9 C 0.131 3.869 10 N -0.490 5.490 11 C 0.028 3.972 12 C 0.052 3.948 13 C -0.463 4.463 14 H 0.093 0.907 15 C 0.037 3.963 16 N -0.811 5.811 17 Si 0.992 3.008 18 H -0.260 1.260 19 H -0.253 1.253 20 H -0.265 1.265 21 C -0.204 4.204 22 C -0.006 4.006 23 Cl -0.068 7.068 24 C 0.085 3.915 25 H 0.249 0.751 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.297 0.703 34 H 0.127 0.873 35 H 0.048 0.952 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 5.686 7.642 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.214 4.214 3 C 0.010 3.990 4 H 0.121 0.879 5 C -0.140 4.140 6 C -0.141 4.141 7 C -0.065 4.065 8 N -0.178 5.178 9 C -0.095 4.095 10 N -0.201 5.201 11 C -0.138 4.138 12 C 0.047 3.953 13 C -0.492 4.492 14 H 0.111 0.889 15 C -0.181 4.181 16 N -0.435 5.435 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.177 1.177 20 H -0.190 1.190 21 C -0.230 4.230 22 C -0.036 4.036 23 Cl -0.039 7.039 24 C -0.042 4.042 25 H 0.266 0.734 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.066 0.934 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.420 5.852 8.259 10.408 hybrid contribution 0.196 -1.079 -1.370 1.755 sum -2.223 4.773 6.890 8.671 Atomic orbital electron populations 1.25690 0.96684 0.99803 0.99279 1.23337 0.94851 1.01515 1.01737 1.18257 0.84296 1.00515 0.95891 0.87876 1.21552 0.95802 1.01600 0.95000 1.21575 0.94896 1.00403 0.97271 1.22099 0.99234 0.96587 0.88575 1.59613 1.07292 1.49535 1.01394 1.18879 1.05407 0.88164 0.97060 1.67340 1.21204 1.06419 1.25119 1.22718 1.01546 0.98879 0.90637 1.18753 0.91729 0.91293 0.93557 1.19871 1.09165 1.06370 1.13750 0.88861 1.26929 0.94371 1.00153 0.96613 1.69841 1.09643 1.27403 1.36647 0.85032 0.79649 0.76209 0.78012 1.18499 1.17685 1.18953 1.21181 1.08288 0.93526 0.99986 1.21146 1.00274 0.85288 0.96912 1.98257 1.93366 1.14353 1.97950 1.21811 0.87091 0.97290 0.98029 0.73436 0.89158 0.92667 0.90116 0.88910 0.95980 0.91963 0.84272 0.89178 0.85529 0.93363 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.69 19.25 74.32 1.43 -3.26 16 2 C -0.21 -6.05 12.56 31.12 0.39 -5.66 16 3 C 0.03 0.83 2.73 -12.55 -0.03 0.80 16 4 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 5 C -0.10 -2.47 5.24 30.67 0.16 -2.31 16 6 C -0.10 -2.52 6.09 30.65 0.19 -2.33 16 7 C 0.06 2.11 5.26 86.33 0.45 2.56 16 8 N -0.46 -17.64 3.99 -701.61 -2.80 -20.44 16 9 C 0.13 6.05 5.28 133.33 0.70 6.76 16 10 N -0.49 -24.78 9.66 -191.08 -1.85 -26.63 16 11 C 0.03 1.49 9.88 85.37 0.84 2.33 16 12 C 0.05 2.67 5.58 -21.18 -0.12 2.56 16 13 C -0.46 -22.88 9.06 23.39 0.21 -22.67 16 14 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 15 C 0.04 1.71 5.15 85.23 0.44 2.15 16 16 N -0.81 -39.62 10.98 21.82 0.24 -39.38 16 17 Si 0.99 34.59 29.59 68.60 2.03 36.62 16 18 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 19 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 20 H -0.27 -8.89 7.11 99.48 0.71 -8.18 16 21 C -0.20 -9.72 9.66 22.65 0.22 -9.50 16 22 C -0.01 -0.27 6.32 22.28 0.14 -0.13 16 23 Cl -0.07 -2.56 28.43 -2.72 -0.08 -2.63 16 24 C 0.09 3.18 4.48 86.33 0.39 3.57 16 25 H 0.25 3.66 7.80 -4.42 -0.03 3.62 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.02 0.82 8.02 -2.38 -0.02 0.80 16 31 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 32 H 0.14 7.59 6.19 -2.91 -0.02 7.57 16 33 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 34 H 0.13 5.59 8.06 -2.91 -0.02 5.57 16 35 H 0.05 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 Total: -1.00 -57.20 321.72 4.04 -53.16 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 1.08 Total: 24.44 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.42 Total: -25.14 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -4.41 Total: -86.44 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.63 kcal Total: -57.20 4.04 -53.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167007864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.163 kcal (2) G-P(sol) polarization free energy of solvation -57.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds