Wall clock time and date at job start Tue Mar 31 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48497 * 109.47446 * 239.99749 * 3 2 1 5 5 H 1.48505 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47170 * 119.99874 * 3 2 1 7 7 C 1.37874 * 119.99777 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.84877 * 180.02562 * 7 2 1 9 9 C 1.53226 * 108.54278 * 231.33046 * 8 7 2 10 10 C 1.52958 * 109.40053 * 305.37632 * 9 8 7 11 11 H 1.09006 * 109.35884 * 303.52391 * 10 9 8 12 12 N 1.46501 * 109.41342 * 183.70422 * 10 9 8 13 13 C 1.38088 * 120.00360 * 84.64234 * 12 10 9 14 14 N 1.32468 * 120.56377 * 0.06004 * 13 12 10 15 15 C 1.32122 * 121.83365 * 180.02562 * 14 13 12 16 16 N 1.31681 * 121.92611 * 359.93928 * 15 14 13 17 17 C 1.32561 * 120.51623 * 0.02590 * 16 15 14 18 18 S 1.76501 * 134.47909 * 180.02562 * 17 16 15 19 19 N 1.69622 * 95.48205 * 179.97438 * 18 17 16 20 20 C 1.28914 * 108.42198 * 359.97438 * 19 18 17 21 21 C 1.40183 * 118.79418 * 0.02562 * 20 19 18 22 22 C 1.52958 * 109.82038 * 63.59855 * 10 9 8 23 23 C 1.51261 * 120.85162 * 0.02562 * 7 2 1 24 24 H 0.97001 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.62509 * 351.04994 * 8 7 2 26 26 H 1.09000 * 109.62307 * 111.42184 * 8 7 2 27 27 H 1.08994 * 109.48854 * 185.39611 * 9 8 7 28 28 H 1.08999 * 109.48112 * 65.34714 * 9 8 7 29 29 H 0.97002 * 119.99619 * 264.64720 * 12 10 9 30 30 H 1.07999 * 119.03519 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.60128 * 179.97438 * 20 19 18 32 32 H 1.08993 * 109.48470 * 56.37569 * 22 10 9 33 33 H 1.09005 * 109.48038 * 176.42610 * 22 10 9 34 34 H 1.09004 * 109.62953 * 8.95467 * 23 7 2 35 35 H 1.08998 * 109.78451 * 248.47464 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9912 -2.1316 -1.1327 10 6 3.3403 -3.5075 -0.9811 11 1 3.5739 -3.9111 0.0041 12 7 3.8608 -4.4086 -2.0123 13 6 5.0466 -5.0848 -1.8040 14 7 5.7222 -4.9278 -0.6754 15 6 6.8593 -5.5617 -0.4500 16 7 7.3843 -6.3854 -1.3331 17 6 6.7785 -6.6057 -2.4914 18 16 7.1351 -7.6028 -3.9035 19 7 5.7512 -7.1515 -4.7742 20 6 5.0745 -6.3182 -4.0603 21 6 5.5620 -5.9613 -2.7954 22 6 1.8234 -3.3832 -1.1331 23 6 1.2677 -2.5151 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 3.8983 -0.2079 -0.1587 26 1 3.8771 -1.5967 0.9571 27 1 5.0753 -2.2353 -1.0871 28 1 3.7072 -1.6989 -2.0920 29 1 3.3723 -4.5303 -2.8415 30 1 7.3730 -5.3999 0.4861 31 1 4.1492 -5.9020 -4.4305 32 1 1.5908 -2.9208 -2.0922 33 1 1.3711 -4.3739 -1.0875 34 1 0.2037 -2.3409 -0.1597 35 1 1.4163 -3.0204 0.9548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:40 Heat of formation + Delta-G solvation = 61.334528 kcal Electronic energy + Delta-G solvation = -20347.095538 eV Core-core repulsion = 17277.697337 eV Total energy + Delta-G solvation = -3069.398201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.24768 -37.99038 -37.51404 -35.15917 -32.76670 -31.93399 -30.41984 -29.75095 -27.29451 -25.67120 -23.97440 -22.32683 -21.81560 -21.60835 -19.81750 -18.86934 -17.65931 -17.31762 -16.41718 -15.79612 -15.54693 -14.95570 -14.59401 -14.54365 -14.10027 -13.64586 -13.32324 -12.98561 -12.63313 -12.25427 -12.01693 -11.95332 -11.58327 -11.32117 -11.14401 -10.83882 -10.76298 -10.62150 -10.31412 -10.17482 -10.02734 -9.74025 -9.27771 -9.08339 -8.95213 -8.71260 -8.57149 -7.96278 -6.20592 -4.12312 0.15843 0.93969 1.11538 1.64167 1.96519 2.98869 3.22733 3.30158 3.31050 3.68316 4.06217 4.17714 4.30251 4.35677 4.54706 5.01285 5.08115 5.29577 5.48950 5.67053 5.93470 6.01277 6.19626 6.31294 6.38249 6.52536 6.60448 6.66194 6.73689 6.86031 6.95338 7.17818 7.29019 7.41546 7.53473 7.59858 7.70972 8.15063 8.25797 8.84909 9.44186 10.88931 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003800 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.957226 B = 7366.812139 C = 7665.337132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.493 4.493 8 C -0.007 4.007 9 C -0.112 4.112 10 C 0.155 3.845 11 H 0.089 0.911 12 N -0.677 5.677 13 C 0.521 3.479 14 N -0.582 5.582 15 C 0.385 3.615 16 N -0.543 5.543 17 C 0.142 3.858 18 S 0.233 5.767 19 N -0.456 5.456 20 C 0.161 3.839 21 C -0.316 4.316 22 C -0.117 4.117 23 C 0.015 3.985 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.408 0.592 30 H 0.207 0.793 31 H 0.182 0.818 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.783 -10.799 -5.005 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.512 4.512 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.052 3.948 11 H 0.107 0.893 12 N -0.302 5.302 13 C 0.264 3.736 14 N -0.308 5.308 15 C 0.091 3.909 16 N -0.266 5.266 17 C -0.117 4.117 18 S 0.378 5.622 19 N -0.269 5.269 20 C -0.045 4.045 21 C -0.339 4.339 22 C -0.155 4.155 23 C -0.023 4.023 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.244 0.756 30 H 0.223 0.777 31 H 0.198 0.802 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 10.866 -11.850 -5.610 17.028 hybrid contribution -1.016 2.000 -0.033 2.244 sum 9.850 -9.850 -5.643 15.030 Atomic orbital electron populations 1.69814 1.06171 1.27231 1.49359 1.24833 0.94722 0.98608 0.94337 0.86653 0.79413 0.82945 0.79053 1.20035 1.21814 1.19900 1.20005 0.89305 0.91443 1.50468 1.19573 0.96562 0.94519 0.93828 1.21913 0.97335 0.94833 1.01013 1.21338 0.94612 0.88790 0.90014 0.89251 1.45511 1.19316 1.43754 1.21611 1.18369 0.85527 0.83284 0.86380 1.67841 1.11655 1.30505 1.20845 1.25048 0.86256 0.83244 0.96382 1.67889 1.34934 1.22214 1.01592 1.24585 0.92406 0.96509 0.98220 1.85040 1.27367 1.46685 1.03092 1.76299 1.06040 1.18733 1.25878 1.22183 0.99711 0.92978 0.89653 1.20180 1.02470 1.11602 0.99695 1.21987 0.91921 0.98898 1.02743 1.19312 0.98794 0.92669 0.91502 0.92405 0.95588 0.95910 0.94236 0.93068 0.75552 0.77681 0.80175 0.92567 0.94425 0.91977 0.97419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 12.73 55.43 0.71 -23.67 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.44 26.80 -169.99 -4.56 15.88 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.49 -12.11 5.51 -98.93 -0.55 -12.65 16 8 C -0.01 -0.15 5.59 -27.49 -0.15 -0.30 16 9 C -0.11 -2.09 5.51 -26.64 -0.15 -2.24 16 10 C 0.15 2.60 2.37 -67.97 -0.16 2.44 16 11 H 0.09 1.63 7.56 -51.93 -0.39 1.23 16 12 N -0.68 -9.20 5.19 -53.39 -0.28 -9.47 16 13 C 0.52 7.31 7.55 -154.73 -1.17 6.15 16 14 N -0.58 -8.47 9.26 -13.36 -0.12 -8.59 16 15 C 0.38 4.83 12.29 -91.97 -1.13 3.70 16 16 N -0.54 -7.43 10.46 -13.00 -0.14 -7.57 16 17 C 0.14 1.95 7.94 -16.20 -0.13 1.82 16 18 S 0.23 2.84 23.91 -107.50 -2.57 0.27 16 19 N -0.46 -5.74 11.96 29.73 0.36 -5.38 16 20 C 0.16 1.84 10.92 -18.05 -0.20 1.64 16 21 C -0.32 -4.15 5.98 -106.68 -0.64 -4.78 16 22 C -0.12 -2.13 5.40 -26.64 -0.14 -2.28 16 23 C 0.02 0.34 5.97 -27.50 -0.16 0.18 16 24 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 25 H 0.03 0.57 5.17 -51.92 -0.27 0.30 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.41 4.49 7.89 -40.82 -0.32 4.17 16 30 H 0.21 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.18 1.46 7.57 -52.49 -0.40 1.06 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.56 7.07 -51.93 -0.37 1.20 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -28.31 302.61 -10.56 -38.87 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.84 Total: -0.51 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.68 Total: -4.39 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.52 Total: -54.68 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.56 Total: 15.88 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.57 Total: 0.27 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.31 -10.56 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.208 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds