Wall clock time and date at job start Tue Mar 31 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48497 * 109.47446 * 239.99749 * 3 2 1 5 5 H 1.48505 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47170 * 119.99874 * 3 2 1 7 7 C 1.37874 * 119.99777 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.84877 * 180.02562 * 7 2 1 9 9 C 1.53226 * 108.54278 * 231.33046 * 8 7 2 10 10 C 1.52958 * 109.40053 * 305.37632 * 9 8 7 11 11 H 1.09006 * 109.35884 * 303.52391 * 10 9 8 12 12 N 1.46501 * 109.41342 * 183.70422 * 10 9 8 13 13 C 1.38088 * 120.00360 * 84.64234 * 12 10 9 14 14 N 1.32468 * 120.56377 * 0.06004 * 13 12 10 15 15 C 1.32122 * 121.83365 * 180.02562 * 14 13 12 16 16 N 1.31681 * 121.92611 * 359.93928 * 15 14 13 17 17 C 1.32561 * 120.51623 * 0.02590 * 16 15 14 18 18 S 1.76501 * 134.47909 * 180.02562 * 17 16 15 19 19 N 1.69622 * 95.48205 * 179.97438 * 18 17 16 20 20 C 1.28914 * 108.42198 * 359.97438 * 19 18 17 21 21 C 1.40183 * 118.79418 * 0.02562 * 20 19 18 22 22 C 1.52958 * 109.82038 * 63.59855 * 10 9 8 23 23 C 1.51261 * 120.85162 * 0.02562 * 7 2 1 24 24 H 0.97001 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.62509 * 351.04994 * 8 7 2 26 26 H 1.09000 * 109.62307 * 111.42184 * 8 7 2 27 27 H 1.08994 * 109.48854 * 185.39611 * 9 8 7 28 28 H 1.08999 * 109.48112 * 65.34714 * 9 8 7 29 29 H 0.97002 * 119.99619 * 264.64720 * 12 10 9 30 30 H 1.07999 * 119.03519 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.60128 * 179.97438 * 20 19 18 32 32 H 1.08993 * 109.48470 * 56.37569 * 22 10 9 33 33 H 1.09005 * 109.48038 * 176.42610 * 22 10 9 34 34 H 1.09004 * 109.62953 * 8.95467 * 23 7 2 35 35 H 1.08998 * 109.78451 * 248.47464 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9912 -2.1316 -1.1327 10 6 3.3403 -3.5075 -0.9811 11 1 3.5739 -3.9111 0.0041 12 7 3.8608 -4.4086 -2.0123 13 6 5.0466 -5.0848 -1.8040 14 7 5.7222 -4.9278 -0.6754 15 6 6.8593 -5.5617 -0.4500 16 7 7.3843 -6.3854 -1.3331 17 6 6.7785 -6.6057 -2.4914 18 16 7.1351 -7.6028 -3.9035 19 7 5.7512 -7.1515 -4.7742 20 6 5.0745 -6.3182 -4.0603 21 6 5.5620 -5.9613 -2.7954 22 6 1.8234 -3.3832 -1.1331 23 6 1.2677 -2.5151 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 3.8983 -0.2079 -0.1587 26 1 3.8771 -1.5967 0.9571 27 1 5.0753 -2.2353 -1.0871 28 1 3.7072 -1.6989 -2.0920 29 1 3.3723 -4.5303 -2.8415 30 1 7.3730 -5.3999 0.4861 31 1 4.1492 -5.9020 -4.4305 32 1 1.5908 -2.9208 -2.0922 33 1 1.3711 -4.3739 -1.0875 34 1 0.2037 -2.3409 -0.1597 35 1 1.4163 -3.0204 0.9548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:36 Heat of formation + Delta-G solvation = 45.295200 kcal Electronic energy + Delta-G solvation = -20347.791055 eV Core-core repulsion = 17277.697337 eV Total energy + Delta-G solvation = -3070.093718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25643 -39.36614 -38.47519 -36.55998 -34.20664 -33.26615 -31.72674 -31.29978 -28.84585 -26.65773 -25.18551 -23.57405 -23.33805 -22.96018 -21.29404 -20.00804 -18.73393 -18.32987 -17.99277 -16.97233 -16.58513 -16.39245 -16.17952 -15.53610 -15.10508 -15.06406 -14.67276 -14.42778 -14.17619 -13.96638 -13.54117 -13.09130 -12.93589 -12.73991 -12.54676 -12.40229 -12.30921 -11.97705 -11.77235 -11.54026 -11.52887 -11.06001 -10.86739 -10.56644 -10.51836 -10.24102 -9.83026 -9.04129 -8.16410 -6.09653 -0.80935 -0.02474 0.07880 0.72092 1.04886 1.40133 1.42979 1.49337 1.90352 2.41572 2.67963 3.09141 3.14292 3.20255 3.45902 3.52069 4.01473 4.13677 4.20616 4.47673 4.54131 4.73171 4.87220 4.96755 4.98266 5.09127 5.21849 5.24985 5.28694 5.36412 5.57311 5.61142 5.66626 5.76984 5.85082 5.96560 6.35093 6.44818 6.97075 7.15319 7.48821 8.94247 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003800 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.957226 B = 7366.812139 C = 7665.337132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.498 4.498 8 C -0.010 4.010 9 C -0.103 4.103 10 C 0.173 3.827 11 H 0.079 0.921 12 N -0.670 5.670 13 C 0.516 3.484 14 N -0.603 5.603 15 C 0.384 3.616 16 N -0.553 5.553 17 C 0.121 3.879 18 S 0.244 5.756 19 N -0.470 5.470 20 C 0.167 3.833 21 C -0.316 4.316 22 C -0.105 4.105 23 C 0.010 3.990 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.422 0.578 30 H 0.239 0.761 31 H 0.215 0.785 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.235 -11.640 -5.849 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.517 4.517 8 C -0.048 4.048 9 C -0.142 4.142 10 C 0.069 3.931 11 H 0.097 0.903 12 N -0.298 5.298 13 C 0.261 3.739 14 N -0.330 5.330 15 C 0.091 3.909 16 N -0.276 5.276 17 C -0.137 4.137 18 S 0.390 5.610 19 N -0.283 5.283 20 C -0.039 4.039 21 C -0.339 4.339 22 C -0.143 4.143 23 C -0.028 4.028 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.261 0.739 30 H 0.255 0.745 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 12.359 -12.724 -6.476 18.884 hybrid contribution -1.413 2.159 0.261 2.593 sum 10.947 -10.566 -6.215 16.434 Atomic orbital electron populations 1.69943 1.07506 1.27463 1.51998 1.25512 0.95244 1.01443 0.95008 0.85894 0.78372 0.79932 0.79362 1.19180 1.22330 1.19429 1.20620 0.91042 0.91895 1.48148 1.19594 0.94668 0.95328 0.95234 1.21764 0.97978 0.95158 0.99344 1.20836 0.93281 0.88402 0.90549 0.90257 1.45088 1.19603 1.43527 1.21553 1.18427 0.85459 0.83412 0.86652 1.67879 1.12509 1.31350 1.21297 1.25715 0.85736 0.82303 0.97162 1.67957 1.35238 1.22567 1.01838 1.24926 0.92994 0.97095 0.98719 1.84998 1.27373 1.46255 1.02373 1.76324 1.06379 1.19367 1.26261 1.22577 1.00425 0.92139 0.88759 1.20257 1.02249 1.11267 1.00122 1.21738 0.93019 0.99035 1.00517 1.19270 0.97177 0.93224 0.93135 0.92839 0.95864 0.95765 0.93207 0.93331 0.73885 0.74482 0.76888 0.92618 0.92151 0.95094 0.97918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.25 12.73 21.45 0.27 -51.98 16 2 C 0.03 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.94 41.91 26.80 68.60 1.84 43.75 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.50 -24.35 5.51 -16.18 -0.09 -24.44 16 8 C -0.01 -0.43 5.59 30.11 0.17 -0.26 16 9 C -0.10 -3.64 5.51 30.66 0.17 -3.47 16 10 C 0.17 5.44 2.37 44.96 0.11 5.54 16 11 H 0.08 2.72 7.56 -2.38 -0.02 2.70 16 12 N -0.67 -16.27 5.19 -322.83 -1.68 -17.94 16 13 C 0.52 13.15 7.55 134.07 1.01 14.17 16 14 N -0.60 -16.12 9.26 -196.17 -1.82 -17.94 16 15 C 0.38 8.75 12.29 180.82 2.22 10.97 16 16 N -0.55 -14.03 10.46 -195.05 -2.04 -16.07 16 17 C 0.12 3.09 7.94 85.26 0.68 3.77 16 18 S 0.24 5.51 23.91 -56.49 -1.35 4.16 16 19 N -0.47 -10.68 11.96 -59.87 -0.72 -11.40 16 20 C 0.17 3.31 10.92 85.59 0.93 4.25 16 21 C -0.32 -7.47 5.98 -21.20 -0.13 -7.60 16 22 C -0.10 -3.64 5.40 30.65 0.17 -3.48 16 23 C 0.01 0.45 5.97 30.10 0.18 0.63 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.02 0.97 5.17 -2.38 -0.01 0.96 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.42 7.83 7.89 -92.71 -0.73 7.09 16 30 H 0.24 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.21 2.61 7.57 -2.91 -0.02 2.59 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.03 1.58 7.07 -2.38 -0.02 1.57 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -60.75 302.61 0.80 -59.95 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.41 Total: 5.53 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.88 Total: 1.94 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -5.98 Total: -115.33 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.84 Total: 43.75 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.35 Total: 4.16 kcal Total: -60.75 0.80 -59.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.242 kcal (2) G-P(sol) polarization free energy of solvation -60.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds