Wall clock time and date at job start Tue Mar 31 2020 08:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47310 * 299.99101 * 3 2 1 6 6 H 1.48502 * 109.47292 * 59.99510 * 3 2 1 7 7 C 1.46524 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00340 * 195.32091 * 7 2 1 9 9 C 1.40363 * 119.99490 * 15.32158 * 7 2 1 10 10 C 1.41339 * 120.25340 * 24.21135 * 9 7 2 11 11 C 1.36484 * 119.95933 * 180.26866 * 10 9 7 12 12 C 1.38663 * 120.50442 * 359.48824 * 11 10 9 13 13 N 1.48014 * 119.74463 * 180.25414 * 12 11 10 14 14 O 1.31699 * 120.00000 * 353.67853 * 13 12 11 15 15 O 1.31701 * 120.00233 * 173.68316 * 13 12 11 16 16 C 1.39497 * 120.51321 * 0.26947 * 12 11 10 17 17 N 1.39672 * 119.99050 * 180.02562 * 16 12 11 18 18 C 1.46493 * 120.00299 * 186.05770 * 17 16 12 19 19 C 1.53001 * 109.47366 * 179.97438 * 18 17 16 20 20 C 1.53837 * 113.66044 * 274.00240 * 19 18 17 21 21 C 1.51771 * 86.68832 * 220.76220 * 20 19 18 22 22 O 1.20764 * 135.74737 * 205.16004 * 21 20 19 23 23 C 1.51573 * 88.46931 * 25.07730 * 21 20 19 24 24 C 1.38170 * 120.02017 * 359.97438 * 16 12 11 25 25 H 0.97004 * 119.99541 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.02198 * 0.05038 * 10 9 7 27 27 H 1.08001 * 119.75133 * 179.75419 * 11 10 9 28 28 H 0.97008 * 119.99969 * 6.05930 * 17 16 12 29 29 H 1.09007 * 109.47140 * 300.00368 * 18 17 16 30 30 H 1.09000 * 109.46775 * 59.99761 * 18 17 16 31 31 H 1.09002 * 112.88122 * 45.33982 * 19 18 17 32 32 H 1.09006 * 113.66744 * 335.19661 * 20 19 18 33 33 H 1.08998 * 113.66398 * 106.26121 * 20 19 18 34 34 H 1.09004 * 113.67030 * 220.46015 * 23 21 20 35 35 H 1.09007 * 113.67199 * 89.39158 * 23 21 20 36 36 H 1.07998 * 120.24759 * 179.97438 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6891 1.3464 0.0006 5 1 1.8705 2.3964 -1.2126 6 1 1.8703 2.3966 1.2124 7 6 2.0278 -1.2689 0.0006 8 1 3.0791 -1.2854 0.2477 9 6 1.3634 -2.4630 -0.3201 10 6 0.1937 -2.4362 -1.1131 11 6 -0.4506 -3.6005 -1.4167 12 6 0.0390 -4.8153 -0.9617 13 7 -0.6700 -6.0682 -1.3057 14 8 -1.8266 -6.0191 -1.9338 15 8 -0.1445 -7.2321 -0.9836 16 6 1.1946 -4.8659 -0.1819 17 7 1.6786 -6.0956 0.2702 18 6 2.8124 -6.1408 1.1966 19 6 3.1393 -7.5974 1.5321 20 6 2.3103 -8.1634 2.6979 21 6 3.5882 -8.8365 3.1641 22 8 3.8619 -9.8092 3.8254 23 6 4.3715 -7.7606 2.4385 24 6 1.8612 -3.6999 0.1425 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1919 -1.4948 -1.4756 27 1 -1.3464 -3.5757 -2.0196 28 1 1.2638 -6.9198 -0.0293 29 1 3.6797 -5.6710 0.7326 30 1 2.5557 -5.6064 2.1113 31 1 3.1546 -8.2416 0.6530 32 1 1.9422 -7.4005 3.3839 33 1 1.5353 -8.8628 2.3845 34 1 5.2516 -8.1367 1.9169 35 1 4.5828 -6.8845 3.0516 36 1 2.7560 -3.7347 0.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168397727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:04 Heat of formation + Delta-G solvation = 17.885702 kcal Electronic energy + Delta-G solvation = -22200.625137 eV Core-core repulsion = 18654.297231 eV Total energy + Delta-G solvation = -3546.327905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18781 -38.90598 -37.07666 -36.77229 -35.05338 -33.87050 -32.76339 -30.85976 -29.17568 -26.95471 -26.46530 -26.10438 -23.68932 -22.10426 -21.07819 -20.37950 -19.16534 -18.24917 -17.15473 -16.77157 -16.12043 -16.05214 -15.78912 -15.55175 -15.10187 -14.72375 -14.53998 -14.13186 -13.67822 -13.37251 -13.07424 -12.84303 -12.75424 -12.57367 -12.01935 -11.73335 -11.63426 -11.47575 -11.31279 -11.11576 -10.87734 -10.73260 -10.16479 -10.00399 -9.83458 -9.57249 -9.55651 -9.51932 -9.29074 -8.34283 -7.72227 -6.89637 -5.21741 0.79740 1.72134 2.32371 2.59512 2.67880 2.74797 2.81464 2.83579 3.27911 3.71185 3.82156 3.84417 4.37248 4.62600 4.80837 4.98531 5.09336 5.23931 5.32461 5.44199 5.60665 5.69449 5.75488 5.89158 6.00195 6.09747 6.23914 6.32117 6.45765 6.53549 6.81926 7.07545 7.21810 7.28873 7.32096 7.48155 7.64326 7.88156 8.01716 8.26026 8.30692 8.58846 9.12136 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004459 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.718039 B = 6278.180827 C = 8057.544980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.061 3.939 3 Si 0.930 3.070 4 H -0.249 1.249 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.372 4.372 8 H 0.103 0.897 9 C 0.136 3.864 10 C -0.166 4.166 11 C -0.042 4.042 12 C -0.147 4.147 13 N 0.059 4.941 14 O -0.313 6.313 15 O -0.346 6.346 16 C 0.301 3.699 17 N -0.737 5.737 18 C 0.137 3.863 19 C -0.111 4.111 20 C -0.188 4.188 21 C 0.359 3.641 22 O -0.433 6.433 23 C -0.182 4.182 24 C -0.315 4.315 25 H 0.304 0.696 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.413 0.587 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.977 1.804 4.140 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.171 4.171 3 Si 0.752 3.248 4 H -0.172 1.172 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.397 4.397 8 H 0.121 0.879 9 C 0.131 3.869 10 C -0.188 4.188 11 C -0.062 4.062 12 C -0.254 4.254 13 N 0.474 4.526 14 O -0.469 6.469 15 O -0.486 6.486 16 C 0.192 3.808 17 N -0.384 5.384 18 C 0.012 3.988 19 C -0.130 4.130 20 C -0.226 4.226 21 C 0.234 3.766 22 O -0.305 6.305 23 C -0.220 4.220 24 C -0.342 4.342 25 H 0.117 0.883 26 H 0.151 0.849 27 H 0.138 0.862 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.078 1.372 4.643 9.418 hybrid contribution -0.264 0.167 -0.269 0.413 sum 7.814 1.539 4.374 9.086 Atomic orbital electron populations 1.69109 1.09184 1.32437 1.22231 1.27880 0.94910 1.03181 0.91156 0.85851 0.81279 0.78011 0.79707 1.17151 1.18556 1.18823 1.21514 0.97543 0.89514 1.31175 0.87934 1.17652 0.90424 0.92048 0.86793 1.21189 0.98427 0.96467 1.02732 1.20011 0.98625 0.89796 0.97771 1.19608 1.01565 0.82012 1.22233 1.49902 1.01172 1.03068 0.98487 1.96115 1.06826 1.96007 1.47918 1.95652 1.70649 1.15297 1.67004 1.17238 0.88345 0.86856 0.88314 1.46069 1.35039 1.07602 1.49722 1.21172 0.90159 0.93792 0.93693 1.22427 0.95472 0.97892 0.97184 1.24213 0.98736 1.01435 0.98191 1.25812 0.94462 0.83215 0.73144 1.90412 1.83893 1.25605 1.30559 1.24040 0.99276 1.00067 0.98606 1.20306 1.06873 0.90037 1.17024 0.88252 0.84865 0.86210 0.73464 0.91783 0.91978 0.87719 0.86180 0.88620 0.88704 0.86044 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.59 10.93 55.98 0.61 -12.97 16 2 C 0.06 1.11 5.36 -15.19 -0.08 1.03 16 3 Si 0.93 13.25 29.67 -169.99 -5.04 8.21 16 4 H -0.25 -3.52 7.11 56.52 0.40 -3.12 16 5 H -0.26 -3.72 7.11 56.52 0.40 -3.32 16 6 H -0.26 -3.74 7.11 56.52 0.40 -3.34 16 7 C -0.37 -7.33 9.32 -35.45 -0.33 -7.66 16 8 H 0.10 1.85 7.98 -52.49 -0.42 1.43 16 9 C 0.14 2.90 5.62 -106.82 -0.60 2.30 16 10 C -0.17 -3.63 8.72 -39.04 -0.34 -3.97 16 11 C -0.04 -0.95 9.50 -40.06 -0.38 -1.33 16 12 C -0.15 -3.47 6.92 -79.32 -0.55 -4.01 16 13 N 0.06 1.50 4.98 34.27 0.17 1.67 16 14 O -0.31 -8.37 19.14 -31.57 -0.60 -8.98 16 15 O -0.35 -8.63 16.29 -31.57 -0.51 -9.14 16 16 C 0.30 6.41 6.63 -83.84 -0.56 5.86 16 17 N -0.74 -13.48 5.62 -58.67 -0.33 -13.81 16 18 C 0.14 1.82 4.78 -4.04 -0.02 1.80 16 19 C -0.11 -1.20 3.77 -89.83 -0.34 -1.54 16 20 C -0.19 -2.03 7.62 -26.92 -0.21 -2.23 16 21 C 0.36 4.06 9.14 -28.16 -0.26 3.80 16 22 O -0.43 -6.37 17.99 6.00 0.11 -6.27 16 23 C -0.18 -1.58 7.62 -27.02 -0.21 -1.79 16 24 C -0.32 -6.42 9.08 -38.51 -0.35 -6.77 16 25 H 0.30 5.02 8.27 -40.82 -0.34 4.69 16 26 H 0.13 2.84 6.07 -52.48 -0.32 2.53 16 27 H 0.12 2.62 7.57 -52.49 -0.40 2.22 16 28 H 0.41 8.08 4.67 -42.09 -0.20 7.89 16 29 H 0.06 0.81 7.71 -51.93 -0.40 0.41 16 30 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.12 1.19 7.92 -51.93 -0.41 0.77 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.12 2.07 6.72 -52.49 -0.35 1.72 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -27.83 317.31 -8.76 -36.58 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -3.73 Total: 14.42 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -4.21 Total: -14.50 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.45 Total: -25.11 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -1.01 Total: -24.39 kcal Atomic # 14 Polarization: 13.25 SS G_CDS: -5.04 Total: 8.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.83 -8.76 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168397727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.469 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds