Wall clock time and date at job start Tue Mar 31 2020 08:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47310 * 299.99101 * 3 2 1 6 6 H 1.48502 * 109.47292 * 59.99510 * 3 2 1 7 7 C 1.46524 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00340 * 195.32091 * 7 2 1 9 9 C 1.40363 * 119.99490 * 15.32158 * 7 2 1 10 10 C 1.41339 * 120.25340 * 24.21135 * 9 7 2 11 11 C 1.36484 * 119.95933 * 180.26866 * 10 9 7 12 12 C 1.38663 * 120.50442 * 359.48824 * 11 10 9 13 13 N 1.48014 * 119.74463 * 180.25414 * 12 11 10 14 14 O 1.31699 * 120.00000 * 353.67853 * 13 12 11 15 15 O 1.31701 * 120.00233 * 173.68316 * 13 12 11 16 16 C 1.39497 * 120.51321 * 0.26947 * 12 11 10 17 17 N 1.39672 * 119.99050 * 180.02562 * 16 12 11 18 18 C 1.46493 * 120.00299 * 186.05770 * 17 16 12 19 19 C 1.53001 * 109.47366 * 179.97438 * 18 17 16 20 20 C 1.53837 * 113.66044 * 274.00240 * 19 18 17 21 21 C 1.51771 * 86.68832 * 220.76220 * 20 19 18 22 22 O 1.20764 * 135.74737 * 205.16004 * 21 20 19 23 23 C 1.51573 * 88.46931 * 25.07730 * 21 20 19 24 24 C 1.38170 * 120.02017 * 359.97438 * 16 12 11 25 25 H 0.97004 * 119.99541 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.02198 * 0.05038 * 10 9 7 27 27 H 1.08001 * 119.75133 * 179.75419 * 11 10 9 28 28 H 0.97008 * 119.99969 * 6.05930 * 17 16 12 29 29 H 1.09007 * 109.47140 * 300.00368 * 18 17 16 30 30 H 1.09000 * 109.46775 * 59.99761 * 18 17 16 31 31 H 1.09002 * 112.88122 * 45.33982 * 19 18 17 32 32 H 1.09006 * 113.66744 * 335.19661 * 20 19 18 33 33 H 1.08998 * 113.66398 * 106.26121 * 20 19 18 34 34 H 1.09004 * 113.67030 * 220.46015 * 23 21 20 35 35 H 1.09007 * 113.67199 * 89.39158 * 23 21 20 36 36 H 1.07998 * 120.24759 * 179.97438 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6891 1.3464 0.0006 5 1 1.8705 2.3964 -1.2126 6 1 1.8703 2.3966 1.2124 7 6 2.0278 -1.2689 0.0006 8 1 3.0791 -1.2854 0.2477 9 6 1.3634 -2.4630 -0.3201 10 6 0.1937 -2.4362 -1.1131 11 6 -0.4506 -3.6005 -1.4167 12 6 0.0390 -4.8153 -0.9617 13 7 -0.6700 -6.0682 -1.3057 14 8 -1.8266 -6.0191 -1.9338 15 8 -0.1445 -7.2321 -0.9836 16 6 1.1946 -4.8659 -0.1819 17 7 1.6786 -6.0956 0.2702 18 6 2.8124 -6.1408 1.1966 19 6 3.1393 -7.5974 1.5321 20 6 2.3103 -8.1634 2.6979 21 6 3.5882 -8.8365 3.1641 22 8 3.8619 -9.8092 3.8254 23 6 4.3715 -7.7606 2.4385 24 6 1.8612 -3.6999 0.1425 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1919 -1.4948 -1.4756 27 1 -1.3464 -3.5757 -2.0196 28 1 1.2638 -6.9198 -0.0293 29 1 3.6797 -5.6710 0.7326 30 1 2.5557 -5.6064 2.1113 31 1 3.1546 -8.2416 0.6530 32 1 1.9422 -7.4005 3.3839 33 1 1.5353 -8.8628 2.3845 34 1 5.2516 -8.1367 1.9169 35 1 4.5828 -6.8845 3.0516 36 1 2.7560 -3.7347 0.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168397727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:03 Heat of formation + Delta-G solvation = 2.451748 kcal Electronic energy + Delta-G solvation = -22201.294403 eV Core-core repulsion = 18654.297231 eV Total energy + Delta-G solvation = -3546.997172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15260 -40.46782 -38.49391 -38.10252 -36.48524 -35.41048 -34.41535 -32.52452 -30.64316 -28.64459 -27.63839 -27.01179 -25.35262 -23.37648 -22.69101 -21.72748 -20.11771 -19.71342 -18.83555 -18.43813 -17.54531 -17.10345 -16.94321 -16.67749 -16.34472 -16.27292 -15.85027 -15.26816 -15.04863 -14.83711 -14.63677 -14.06925 -14.03052 -13.53722 -13.43593 -13.08610 -12.93792 -12.85180 -12.45652 -12.05389 -11.94864 -11.92001 -11.75426 -11.57683 -11.42629 -11.40999 -11.21377 -10.79903 -10.44450 -10.03139 -9.23201 -8.47143 -6.85234 -1.03485 0.80867 0.83650 1.12905 1.15816 1.42248 1.56209 1.65909 2.09271 2.33340 2.59648 2.87145 3.31330 3.44466 3.78142 3.88518 4.00098 4.19948 4.30912 4.45145 4.50961 4.61110 4.63614 4.70176 4.78975 4.84431 4.88753 4.93381 4.98786 5.14726 5.24230 5.46276 5.60183 5.62534 5.78367 6.03968 6.27622 6.33675 6.44608 6.59155 6.68070 7.04082 7.64442 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004459 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.718039 B = 6278.180827 C = 8057.544980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.023 3.977 3 Si 1.007 2.993 4 H -0.237 1.237 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.317 4.317 8 H 0.135 0.865 9 C 0.084 3.916 10 C -0.134 4.134 11 C -0.081 4.081 12 C -0.130 4.130 13 N 0.054 4.946 14 O -0.420 6.420 15 O -0.394 6.394 16 C 0.278 3.722 17 N -0.736 5.736 18 C 0.132 3.868 19 C -0.110 4.110 20 C -0.193 4.193 21 C 0.360 3.640 22 O -0.473 6.473 23 C -0.155 4.155 24 C -0.303 4.303 25 H 0.323 0.677 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.406 0.594 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 6.786 6.075 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.160 1.160 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.342 4.342 8 H 0.152 0.848 9 C 0.079 3.921 10 C -0.157 4.157 11 C -0.101 4.101 12 C -0.246 4.246 13 N 0.438 4.562 14 O -0.548 6.548 15 O -0.520 6.520 16 C 0.168 3.832 17 N -0.380 5.380 18 C 0.008 3.992 19 C -0.129 4.129 20 C -0.231 4.231 21 C 0.237 3.763 22 O -0.348 6.348 23 C -0.193 4.193 24 C -0.331 4.331 25 H 0.137 0.863 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.256 0.744 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.169 0.831 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.057 6.127 6.488 15.000 hybrid contribution -1.200 -0.509 -0.622 1.445 sum 10.856 5.617 5.866 13.558 Atomic orbital electron populations 1.69092 1.10818 1.34941 1.19276 1.28902 0.95543 1.05994 0.90479 0.84722 0.80208 0.73067 0.79651 1.15963 1.18535 1.18361 1.22378 0.98704 0.89424 1.23673 0.84752 1.17983 0.91250 0.93601 0.89313 1.21386 0.97490 0.95860 1.00962 1.20035 0.99665 0.90361 1.00089 1.20203 1.01781 0.81817 1.20842 1.49862 1.01667 1.03276 1.01349 1.96043 1.09302 1.96162 1.53286 1.95567 1.71155 1.16116 1.69151 1.17420 0.88259 0.88509 0.89017 1.46285 1.35725 1.06321 1.49681 1.21493 0.88923 0.95508 0.93237 1.22344 0.96968 0.96440 0.97127 1.24332 0.98607 1.01578 0.98589 1.26140 0.95329 0.82778 0.72043 1.90401 1.84473 1.27312 1.32598 1.23969 0.98391 0.99592 0.97328 1.20502 1.07174 0.88860 1.16583 0.86324 0.84478 0.87179 0.74414 0.89941 0.90553 0.88528 0.84902 0.90131 0.86930 0.83138 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -24.40 10.93 23.21 0.25 -24.15 16 2 C 0.02 0.69 5.36 87.20 0.47 1.16 16 3 Si 1.01 21.44 29.67 68.60 2.04 23.48 16 4 H -0.24 -4.73 7.11 99.48 0.71 -4.02 16 5 H -0.26 -5.66 7.11 99.48 0.71 -4.95 16 6 H -0.26 -5.48 7.11 99.48 0.71 -4.77 16 7 C -0.32 -10.53 9.32 24.95 0.23 -10.30 16 8 H 0.13 3.73 7.98 -2.91 -0.02 3.71 16 9 C 0.08 3.28 5.62 -21.29 -0.12 3.16 16 10 C -0.13 -5.71 8.72 22.62 0.20 -5.51 16 11 C -0.08 -3.84 9.50 21.96 0.21 -3.63 16 12 C -0.13 -6.49 6.92 36.78 0.25 -6.24 16 13 N 0.05 3.05 4.98 -45.50 -0.23 2.82 16 14 O -0.42 -25.58 19.14 3.52 0.07 -25.52 16 15 O -0.39 -21.71 16.29 3.51 0.06 -21.66 16 16 C 0.28 11.81 6.63 38.18 0.25 12.06 16 17 N -0.74 -26.91 5.62 -339.55 -1.91 -28.82 16 18 C 0.13 3.16 4.78 86.38 0.41 3.58 16 19 C -0.11 -2.20 3.77 -10.28 -0.04 -2.24 16 20 C -0.19 -4.07 7.62 30.47 0.23 -3.84 16 21 C 0.36 7.73 9.14 29.67 0.27 8.00 16 22 O -0.47 -13.85 17.99 -1.46 -0.03 -13.88 16 23 C -0.16 -2.18 7.62 30.41 0.23 -1.95 16 24 C -0.30 -11.35 9.08 22.96 0.21 -11.14 16 25 H 0.32 9.18 8.27 -92.71 -0.77 8.42 16 26 H 0.14 5.59 6.07 -2.91 -0.02 5.58 16 27 H 0.11 5.28 7.57 -2.91 -0.02 5.25 16 28 H 0.41 16.69 4.67 -112.87 -0.53 16.16 16 29 H 0.08 1.73 7.71 -2.38 -0.02 1.71 16 30 H 0.08 1.65 7.87 -2.39 -0.02 1.64 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 2.44 7.92 -2.38 -0.02 2.42 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.15 1.34 8.10 -2.38 -0.02 1.32 16 36 H 0.15 4.46 6.72 -2.91 -0.02 4.44 16 Total: -1.00 -66.08 317.31 3.67 -62.40 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: 0.61 Total: 42.21 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 2.81 Total: -16.89 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -1.88 Total: -50.15 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: 0.10 Total: -61.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: 2.04 Total: 23.48 kcal Total: -66.08 3.67 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168397727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.856 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds