Wall clock time and date at job start Tue Mar 31 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47118 * 270.00046 * 3 2 1 5 5 H 1.48498 * 109.47013 * 30.00130 * 3 2 1 6 6 H 1.48499 * 109.47164 * 150.00059 * 3 2 1 7 7 C 1.37881 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00072 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47472 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.38993 * 119.99702 * 179.97438 * 12 11 10 14 14 C 1.39026 * 119.67263 * 0.02562 * 13 12 11 15 15 C 1.38455 * 119.21945 * 180.02562 * 14 13 12 16 16 C 1.38630 * 118.56975 * 359.97438 * 15 14 13 17 17 C 1.38737 * 119.27708 * 0.02562 * 16 15 14 18 18 O 1.35675 * 119.63687 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99893 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47113 * 59.99936 * 19 18 17 21 21 F 1.39901 * 109.46969 * 179.97438 * 19 18 17 22 22 F 1.39900 * 109.47228 * 299.99461 * 19 18 17 23 23 N 1.32349 * 120.72600 * 0.25142 * 17 16 15 24 24 H 0.97002 * 119.99972 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46875 * 60.00126 * 9 7 2 26 26 H 1.08997 * 109.47220 * 300.00551 * 9 7 2 27 27 H 1.09002 * 109.47200 * 60.00206 * 10 9 7 28 28 H 1.09005 * 109.47237 * 300.00047 * 10 9 7 29 29 H 1.09002 * 109.46873 * 59.99842 * 11 10 9 30 30 H 1.08997 * 109.46952 * 300.00432 * 11 10 9 31 31 H 0.97000 * 120.00142 * 0.02562 * 12 11 10 32 32 H 1.07996 * 120.38588 * 0.04285 * 14 13 12 33 33 H 1.07998 * 120.71350 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.35943 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0399 -4.0177 -0.0027 13 6 7.4064 -4.2716 -0.0033 14 6 8.3038 -3.2098 -0.0029 15 6 9.6630 -3.4735 -0.0040 16 6 10.0819 -4.7950 -0.0050 17 6 9.1334 -5.8074 -0.0054 18 8 9.5353 -7.1033 -0.0069 19 6 8.5113 -8.1000 -0.0066 20 9 7.7159 -7.9518 -1.1479 21 9 9.0972 -9.3704 -0.0088 22 9 7.7184 -7.9538 1.1367 23 7 7.8408 -5.5230 -0.0098 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6799 -0.8910 27 1 3.6579 -3.1497 -0.8925 28 1 3.6586 -3.1510 0.8875 29 1 5.9149 -2.1234 0.8882 30 1 5.9149 -2.1219 -0.8917 31 1 5.4096 -4.7550 -0.0034 32 1 7.9448 -2.1912 -0.0014 33 1 10.3813 -2.6670 -0.0041 34 1 11.1352 -5.0337 -0.0055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:24 Heat of formation + Delta-G solvation = -166.178785 kcal Electronic energy + Delta-G solvation = -22380.996342 eV Core-core repulsion = 18284.830061 eV Total energy + Delta-G solvation = -4096.166281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.35614 -48.16377 -47.94959 -40.89617 -38.70154 -36.30468 -33.74772 -32.63756 -31.63347 -29.57520 -27.03728 -26.10840 -23.84556 -23.20972 -22.09870 -20.47811 -19.89990 -19.16530 -19.16213 -17.63928 -16.88204 -16.44961 -15.95396 -15.76883 -15.44905 -15.08716 -14.90135 -14.65103 -14.63704 -14.41893 -14.13110 -14.12963 -14.05855 -13.44578 -13.38765 -13.35179 -12.75425 -12.34156 -12.21435 -11.98973 -11.15851 -11.02481 -10.45057 -10.15971 -10.03901 -9.93861 -9.78045 -9.59464 -9.30390 -8.61828 -7.80441 -6.11658 -4.11089 0.99422 1.21105 1.30582 2.72321 3.03256 3.24914 3.32928 3.34445 3.56672 3.79219 4.00773 4.30988 4.37781 4.70321 4.80744 5.03719 5.16653 5.21607 5.33445 5.44362 5.65018 5.78968 5.86849 6.06403 6.27077 6.30589 6.52572 6.66289 6.85782 7.12367 7.25980 7.43841 7.69226 7.86125 8.44520 8.92491 9.49661 11.01676 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002990 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.773073 B = 9362.274058 C =10168.633885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.119 3.881 12 N -0.711 5.711 13 C 0.450 3.550 14 C -0.257 4.257 15 C -0.001 4.001 16 C -0.236 4.236 17 C 0.353 3.647 18 O -0.310 6.310 19 C 0.614 3.386 20 F -0.158 7.158 21 F -0.141 7.141 22 F -0.158 7.158 23 N -0.592 5.592 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.397 -11.591 0.023 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.004 4.004 12 N -0.340 5.340 13 C 0.212 3.788 14 C -0.282 4.282 15 C -0.026 4.026 16 C -0.259 4.259 17 C 0.175 3.825 18 O -0.225 6.225 19 C 0.523 3.477 20 F -0.140 7.140 21 F -0.123 7.123 22 F -0.140 7.140 23 N -0.324 5.324 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 21.750 -12.052 0.020 24.866 hybrid contribution 0.333 0.898 -0.020 0.958 sum 22.083 -11.155 0.000 24.740 Atomic orbital electron populations 1.69910 1.06351 1.27020 1.50740 1.25041 0.94754 0.99248 0.94447 0.86760 0.80326 0.83545 0.78532 1.20240 1.21339 1.18964 1.21085 0.89269 0.94585 1.51305 0.90985 1.19490 0.97437 0.91188 0.96573 1.21702 0.90111 1.01186 1.02194 1.21812 0.97066 0.80217 1.01287 1.44967 1.02001 1.09502 1.77563 1.17870 0.86210 0.86757 0.87957 1.21450 0.93226 0.99773 1.13745 1.21143 0.95262 0.95347 0.90860 1.20620 0.99586 0.90521 1.15217 1.18883 0.89066 0.81214 0.93346 1.86584 1.33655 1.13721 1.88505 1.19162 0.75781 0.77510 0.75264 1.93313 1.74359 1.95316 1.51039 1.93282 1.84959 1.37591 1.96434 1.93311 1.74494 1.95337 1.50896 1.66525 1.15110 1.23287 1.27444 0.92623 0.96302 0.96746 0.91871 0.91851 0.91759 0.91764 0.75683 0.84016 0.83644 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.12 1.66 4.89 -4.04 -0.02 1.64 16 12 N -0.71 -9.57 5.73 -60.44 -0.35 -9.92 16 13 C 0.45 6.00 7.65 -155.01 -1.19 4.81 16 14 C -0.26 -2.85 9.32 -39.21 -0.37 -3.21 16 15 C 0.00 -0.01 10.16 -39.36 -0.40 -0.41 16 16 C -0.24 -2.34 10.03 -39.25 -0.39 -2.74 16 17 C 0.35 4.42 7.18 -17.14 -0.12 4.30 16 18 O -0.31 -3.70 10.35 -18.73 -0.19 -3.90 16 19 C 0.61 7.26 3.50 101.05 0.35 7.62 16 20 F -0.16 -2.03 16.54 2.25 0.04 -1.99 16 21 F -0.14 -1.48 17.53 2.25 0.04 -1.44 16 22 F -0.16 -2.03 16.56 2.25 0.04 -1.99 16 23 N -0.59 -8.25 8.10 -12.51 -0.10 -8.36 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 26 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.86 7.92 -51.93 -0.41 0.44 16 30 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 31 H 0.41 5.45 8.60 -40.82 -0.35 5.10 16 32 H 0.14 1.41 6.69 -52.49 -0.35 1.06 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -30.20 308.77 -6.16 -36.36 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.57 Total: 0.26 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.82 Total: -3.38 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.33 Total: -44.80 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.19 Total: -3.90 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.20 -6.16 -36.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.819 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds