Wall clock time and date at job start Tue Mar 31 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47118 * 270.00046 * 3 2 1 5 5 H 1.48498 * 109.47013 * 30.00130 * 3 2 1 6 6 H 1.48499 * 109.47164 * 150.00059 * 3 2 1 7 7 C 1.37881 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00072 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47472 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.38993 * 119.99702 * 179.97438 * 12 11 10 14 14 C 1.39026 * 119.67263 * 0.02562 * 13 12 11 15 15 C 1.38455 * 119.21945 * 180.02562 * 14 13 12 16 16 C 1.38630 * 118.56975 * 359.97438 * 15 14 13 17 17 C 1.38737 * 119.27708 * 0.02562 * 16 15 14 18 18 O 1.35675 * 119.63687 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99893 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47113 * 59.99936 * 19 18 17 21 21 F 1.39901 * 109.46969 * 179.97438 * 19 18 17 22 22 F 1.39900 * 109.47228 * 299.99461 * 19 18 17 23 23 N 1.32349 * 120.72600 * 0.25142 * 17 16 15 24 24 H 0.97002 * 119.99972 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46875 * 60.00126 * 9 7 2 26 26 H 1.08997 * 109.47220 * 300.00551 * 9 7 2 27 27 H 1.09002 * 109.47200 * 60.00206 * 10 9 7 28 28 H 1.09005 * 109.47237 * 300.00047 * 10 9 7 29 29 H 1.09002 * 109.46873 * 59.99842 * 11 10 9 30 30 H 1.08997 * 109.46952 * 300.00432 * 11 10 9 31 31 H 0.97000 * 120.00142 * 0.02562 * 12 11 10 32 32 H 1.07996 * 120.38588 * 0.04285 * 14 13 12 33 33 H 1.07998 * 120.71350 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.35943 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0399 -4.0177 -0.0027 13 6 7.4064 -4.2716 -0.0033 14 6 8.3038 -3.2098 -0.0029 15 6 9.6630 -3.4735 -0.0040 16 6 10.0819 -4.7950 -0.0050 17 6 9.1334 -5.8074 -0.0054 18 8 9.5353 -7.1033 -0.0069 19 6 8.5113 -8.1000 -0.0066 20 9 7.7159 -7.9518 -1.1479 21 9 9.0972 -9.3704 -0.0088 22 9 7.7184 -7.9538 1.1367 23 7 7.8408 -5.5230 -0.0098 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6799 -0.8910 27 1 3.6579 -3.1497 -0.8925 28 1 3.6586 -3.1510 0.8875 29 1 5.9149 -2.1234 0.8882 30 1 5.9149 -2.1219 -0.8917 31 1 5.4096 -4.7550 -0.0034 32 1 7.9448 -2.1912 -0.0014 33 1 10.3813 -2.6670 -0.0041 34 1 11.1352 -5.0337 -0.0055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:23 Heat of formation + Delta-G solvation = -186.287073 kcal Electronic energy + Delta-G solvation = -22381.868303 eV Core-core repulsion = 18284.830061 eV Total energy + Delta-G solvation = -4097.038242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.29439 -49.07860 -48.92890 -41.75986 -39.60331 -37.44147 -35.39440 -33.80598 -33.10756 -30.64993 -28.53486 -27.01544 -25.14047 -24.17278 -23.21334 -22.03230 -20.82324 -20.11313 -20.09700 -18.94420 -18.52310 -17.40301 -16.79528 -16.72737 -16.49979 -16.26061 -16.16952 -15.79322 -15.61983 -15.42817 -15.37134 -15.11163 -15.08778 -14.75354 -14.49458 -14.32547 -14.15790 -13.74161 -13.50592 -13.12964 -12.70861 -12.57443 -11.85479 -11.72756 -11.63238 -11.32748 -11.18099 -10.85901 -10.74991 -10.53128 -8.71361 -8.27882 -6.33270 0.15390 0.41084 0.41617 1.40099 1.42362 1.53974 1.80038 2.07294 2.38937 2.70746 2.88413 3.07393 3.08167 3.41216 3.97568 4.00067 4.05328 4.22016 4.33167 4.40464 4.56354 4.86967 4.89547 4.91650 5.02296 5.15785 5.30321 5.46246 5.57922 5.63415 5.69332 5.91434 6.28713 6.47387 6.75943 6.92431 7.31719 8.89179 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002990 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.773073 B = 9362.274058 C =10168.633885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.002 4.002 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.105 4.105 11 C 0.136 3.864 12 N -0.720 5.720 13 C 0.426 3.574 14 C -0.259 4.259 15 C 0.010 3.990 16 C -0.224 4.224 17 C 0.324 3.676 18 O -0.309 6.309 19 C 0.615 3.385 20 F -0.166 7.166 21 F -0.133 7.133 22 F -0.167 7.167 23 N -0.617 5.617 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.403 0.597 32 H 0.157 0.843 33 H 0.188 0.812 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.968 -9.941 0.029 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.045 4.045 10 C -0.143 4.143 11 C 0.013 3.987 12 N -0.350 5.350 13 C 0.190 3.810 14 C -0.284 4.284 15 C -0.015 4.015 16 C -0.248 4.248 17 C 0.147 3.853 18 O -0.223 6.223 19 C 0.524 3.476 20 F -0.148 7.148 21 F -0.115 7.115 22 F -0.149 7.149 23 N -0.349 5.349 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.174 0.826 33 H 0.205 0.795 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 25.366 -10.431 0.026 27.427 hybrid contribution -0.777 0.271 -0.024 0.823 sum 24.589 -10.160 0.002 26.605 Atomic orbital electron populations 1.70090 1.08630 1.28236 1.52717 1.26131 0.95650 1.03978 0.94025 0.85576 0.79749 0.77536 0.79279 1.19103 1.21534 1.15861 1.21526 0.92478 0.92964 1.50513 0.95480 1.19432 0.93528 0.94132 0.97413 1.21479 0.93178 0.98333 1.01344 1.21528 0.93837 0.80850 1.02503 1.44830 1.02420 1.08973 1.78796 1.18118 0.86186 0.87333 0.89345 1.21744 0.93883 0.99747 1.13019 1.21650 0.95147 0.95976 0.88695 1.21081 1.00474 0.90282 1.12927 1.19332 0.89334 0.81712 0.94935 1.86583 1.33325 1.13763 1.88676 1.19143 0.75750 0.77870 0.74790 1.93292 1.74704 1.95406 1.51446 1.93295 1.84746 1.37064 1.96369 1.93291 1.74836 1.95427 1.51298 1.66401 1.16239 1.24102 1.28114 0.92560 0.95218 0.95370 0.92849 0.92855 0.90515 0.90464 0.76254 0.82577 0.79466 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 3 Si 0.96 42.26 27.47 68.60 1.88 44.14 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 7 C -0.54 -30.10 9.66 25.60 0.25 -29.85 16 8 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.11 -3.65 5.27 30.59 0.16 -3.48 16 11 C 0.14 3.50 4.89 86.38 0.42 3.93 16 12 N -0.72 -18.69 5.73 -345.13 -1.98 -20.67 16 13 C 0.43 10.70 7.65 133.02 1.02 11.71 16 14 C -0.26 -4.88 9.32 22.51 0.21 -4.67 16 15 C 0.01 0.14 10.16 22.42 0.23 0.37 16 16 C -0.22 -3.70 10.03 22.48 0.23 -3.47 16 17 C 0.32 7.60 7.18 84.73 0.61 8.21 16 18 O -0.31 -7.06 10.35 -89.92 -0.93 -7.99 16 19 C 0.62 14.41 3.50 113.37 0.40 14.80 16 20 F -0.17 -4.29 16.54 44.97 0.74 -3.55 16 21 F -0.13 -2.73 17.53 44.97 0.79 -1.94 16 22 F -0.17 -4.29 16.56 44.97 0.74 -3.54 16 23 N -0.62 -16.69 8.10 -306.31 -2.48 -19.17 16 24 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 26 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.08 1.80 7.92 -2.39 -0.02 1.78 16 30 H 0.08 1.80 7.92 -2.39 -0.02 1.78 16 31 H 0.40 10.89 8.60 -92.71 -0.80 10.09 16 32 H 0.16 2.44 6.69 -2.91 -0.02 2.42 16 33 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -67.78 308.77 3.47 -64.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.30 Total: 10.04 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.10 Total: -2.26 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.16 Total: -99.21 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.93 Total: -7.99 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 2.28 Total: -9.03 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -67.78 3.47 -64.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.979 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds