Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48506 * 109.46616 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47079 * 300.00385 * 3 2 1 6 6 H 1.48495 * 109.47003 * 60.00525 * 3 2 1 7 7 C 1.37882 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99547 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47321 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47455 * 179.97438 * 11 10 9 13 13 C 1.38418 * 119.99770 * 180.02562 * 12 11 10 14 14 N 1.31952 * 120.13963 * 0.02562 * 13 12 11 15 15 C 1.32727 * 122.63010 * 180.02562 * 14 13 12 16 16 Cl 1.73593 * 119.02179 * 180.02562 * 15 14 13 17 17 C 1.36224 * 121.95191 * 0.02562 * 15 14 13 18 18 C 1.40796 * 118.85758 * 359.97438 * 17 15 14 19 19 C 1.40201 * 122.16549 * 180.02562 * 18 17 15 20 20 C 1.36278 * 119.47816 * 179.97438 * 19 18 17 21 21 C 1.39292 * 120.97303 * 0.02562 * 20 19 18 22 22 C 1.36302 * 121.04807 * 0.02562 * 21 20 19 23 23 C 1.40087 * 119.53864 * 0.27703 * 22 21 20 24 24 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47090 * 59.99973 * 9 7 2 26 26 H 1.09000 * 109.46821 * 300.00425 * 9 7 2 27 27 H 1.09006 * 109.47173 * 60.00228 * 10 9 7 28 28 H 1.09000 * 109.47518 * 299.99836 * 10 9 7 29 29 H 1.09006 * 109.46591 * 60.00140 * 11 10 9 30 30 H 1.09000 * 109.46911 * 300.00477 * 11 10 9 31 31 H 0.96997 * 119.99434 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.56537 * 180.02562 * 17 15 14 33 33 H 1.08001 * 120.26089 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.51393 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.47819 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.22700 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9708 -7.4057 -0.0006 14 7 0.6741 -7.6499 -0.0007 15 6 0.1776 -8.8808 -0.0003 16 17 -1.5452 -9.0941 -0.0011 17 6 0.9799 -9.9817 0.0007 18 6 2.3767 -9.8046 0.0008 19 6 3.2664 -10.8881 0.0013 20 6 4.6089 -10.6535 0.0008 21 6 5.1094 -9.3537 0.0004 22 6 4.2723 -8.2780 0.0010 23 6 2.8863 -8.4815 0.0079 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8533 -5.0451 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.3859 -5.9233 -0.0008 32 1 0.5518 -10.9733 0.0006 33 1 2.8909 -11.9008 0.0020 34 1 5.2948 -11.4878 0.0016 35 1 6.1778 -9.1955 -0.0003 36 1 4.6748 -7.2758 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 32.139275 kcal Electronic energy + Delta-G solvation = -19293.340306 eV Core-core repulsion = 16188.339647 eV Total energy + Delta-G solvation = -3105.000659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.02124 -37.79975 -36.96654 -35.88776 -33.90731 -32.39560 -31.46876 -30.79162 -28.98640 -26.53066 -24.11558 -23.88513 -22.79995 -21.57117 -20.47539 -18.46233 -17.85476 -16.80223 -16.33806 -15.78681 -15.31476 -15.29276 -14.77921 -14.47205 -14.32958 -14.06280 -13.74126 -13.15969 -12.78047 -12.43055 -12.32711 -12.06980 -11.83680 -11.37491 -11.36271 -11.21513 -10.92873 -10.76096 -10.56863 -10.40198 -9.87149 -9.64052 -9.42847 -9.28795 -9.13458 -9.07751 -8.39266 -7.45299 -6.03577 -4.06787 0.36749 0.71117 1.80713 1.84122 2.90226 3.17483 3.28745 3.36396 3.39782 3.93242 4.36813 4.42352 4.44394 4.63068 4.78517 4.85749 5.02516 5.14720 5.32338 5.46574 5.54062 5.62031 5.69624 5.75084 5.77053 6.10777 6.13648 6.20112 6.25028 6.56183 6.60299 6.65017 6.90494 7.08994 7.29510 7.61594 7.73613 7.95007 8.09332 8.35839 8.99990 9.57578 11.07687 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.003273 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.514262 B = 8553.676521 C =10061.440445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.123 3.877 12 N -0.697 5.697 13 C 0.466 3.534 14 N -0.562 5.562 15 C 0.230 3.770 16 Cl -0.043 7.043 17 C -0.226 4.226 18 C 0.026 3.974 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.139 4.139 22 C -0.070 4.070 23 C -0.152 4.152 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.409 0.591 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 -23.577 -0.001 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.161 4.161 11 C 0.001 3.999 12 N -0.327 5.327 13 C 0.216 3.784 14 N -0.285 5.285 15 C 0.076 3.924 16 Cl -0.014 7.014 17 C -0.251 4.251 18 C 0.021 3.979 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.247 0.753 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.266 -22.636 -0.002 23.487 hybrid contribution 1.067 0.416 0.000 1.145 sum 7.333 -22.220 -0.002 23.398 Atomic orbital electron populations 1.69973 1.06052 1.26608 1.50548 1.25031 0.94855 0.99313 0.95256 0.86531 0.80041 0.83765 0.77624 1.19762 1.20984 1.20980 1.21232 0.93008 0.90926 1.50935 0.92622 1.19012 0.93783 0.90724 0.97727 1.21920 0.99893 0.93428 1.00840 1.21735 0.91510 0.84258 1.02410 1.45023 1.09999 1.01958 1.75677 1.18211 0.87160 0.85623 0.87391 1.66183 1.13421 1.23223 1.25711 1.20551 0.86511 0.88999 0.96350 1.98395 1.10283 1.96399 1.96371 1.21051 0.91865 0.98861 1.13292 1.17763 0.92976 0.92144 0.95064 1.20867 0.92969 0.98007 1.02340 1.20974 0.95446 0.97088 0.97060 1.20813 1.00050 0.92379 1.02505 1.20823 0.91562 0.99545 0.97091 1.18474 0.94297 0.92941 1.10022 0.92955 0.96209 0.96217 0.92748 0.92743 0.91422 0.91415 0.75335 0.84186 0.85048 0.85636 0.85597 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.63 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.12 5.70 -4.04 -0.02 2.09 16 12 N -0.70 -9.91 5.63 -60.08 -0.34 -10.24 16 13 C 0.47 6.88 7.53 -155.15 -1.17 5.71 16 14 N -0.56 -9.17 9.49 -9.57 -0.09 -9.26 16 15 C 0.23 3.30 7.21 -17.89 -0.13 3.17 16 16 Cl -0.04 -0.57 29.06 -51.86 -1.51 -2.07 16 17 C -0.23 -2.72 9.59 -39.34 -0.38 -3.09 16 18 C 0.03 0.30 5.74 -106.84 -0.61 -0.31 16 19 C -0.12 -1.11 9.81 -39.55 -0.39 -1.50 16 20 C -0.09 -0.68 9.95 -39.90 -0.40 -1.08 16 21 C -0.14 -1.16 9.95 -39.89 -0.40 -1.55 16 22 C -0.07 -0.71 9.52 -39.59 -0.38 -1.08 16 23 C -0.15 -1.91 5.75 -106.70 -0.61 -2.53 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.41 4.76 6.62 -40.82 -0.27 4.49 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.13 1.04 6.51 -52.49 -0.34 0.70 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -31.38 324.16 -10.89 -42.27 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.38 Total: -0.50 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -5.17 Total: -15.48 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.31 Total: -45.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.38 -10.89 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.407 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds