Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48506 * 109.46616 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47079 * 300.00385 * 3 2 1 6 6 H 1.48495 * 109.47003 * 60.00525 * 3 2 1 7 7 C 1.37882 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99547 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47321 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47455 * 179.97438 * 11 10 9 13 13 C 1.38418 * 119.99770 * 180.02562 * 12 11 10 14 14 N 1.31952 * 120.13963 * 0.02562 * 13 12 11 15 15 C 1.32727 * 122.63010 * 180.02562 * 14 13 12 16 16 Cl 1.73593 * 119.02179 * 180.02562 * 15 14 13 17 17 C 1.36224 * 121.95191 * 0.02562 * 15 14 13 18 18 C 1.40796 * 118.85758 * 359.97438 * 17 15 14 19 19 C 1.40201 * 122.16549 * 180.02562 * 18 17 15 20 20 C 1.36278 * 119.47816 * 179.97438 * 19 18 17 21 21 C 1.39292 * 120.97303 * 0.02562 * 20 19 18 22 22 C 1.36302 * 121.04807 * 0.02562 * 21 20 19 23 23 C 1.40087 * 119.53864 * 0.27703 * 22 21 20 24 24 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47090 * 59.99973 * 9 7 2 26 26 H 1.09000 * 109.46821 * 300.00425 * 9 7 2 27 27 H 1.09006 * 109.47173 * 60.00228 * 10 9 7 28 28 H 1.09000 * 109.47518 * 299.99836 * 10 9 7 29 29 H 1.09006 * 109.46591 * 60.00140 * 11 10 9 30 30 H 1.09000 * 109.46911 * 300.00477 * 11 10 9 31 31 H 0.96997 * 119.99434 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.56537 * 180.02562 * 17 15 14 33 33 H 1.08001 * 120.26089 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.51393 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.47819 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.22700 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9708 -7.4057 -0.0006 14 7 0.6741 -7.6499 -0.0007 15 6 0.1776 -8.8808 -0.0003 16 17 -1.5452 -9.0941 -0.0011 17 6 0.9799 -9.9817 0.0007 18 6 2.3767 -9.8046 0.0008 19 6 3.2664 -10.8881 0.0013 20 6 4.6089 -10.6535 0.0008 21 6 5.1094 -9.3537 0.0004 22 6 4.2723 -8.2780 0.0010 23 6 2.8863 -8.4815 0.0079 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8533 -5.0451 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.3859 -5.9233 -0.0008 32 1 0.5518 -10.9733 0.0006 33 1 2.8909 -11.9008 0.0020 34 1 5.2948 -11.4878 0.0016 35 1 6.1778 -9.1955 -0.0003 36 1 4.6748 -7.2758 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = 15.021634 kcal Electronic energy + Delta-G solvation = -19294.082583 eV Core-core repulsion = 16188.339647 eV Total energy + Delta-G solvation = -3105.742936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.92097 -38.68583 -38.07152 -37.01752 -35.62129 -33.90069 -32.50330 -31.91968 -30.05595 -28.21477 -25.39698 -24.82960 -24.09806 -22.51712 -22.16271 -19.41380 -18.87427 -18.33769 -17.72111 -16.74151 -16.57746 -16.50995 -16.14973 -15.73710 -15.62563 -14.87428 -14.74604 -14.28536 -13.93906 -13.92286 -13.69744 -13.62144 -12.90504 -12.75810 -12.55239 -12.52466 -12.35876 -12.24483 -12.03522 -11.70612 -11.51560 -11.27734 -11.19232 -10.57179 -10.55864 -10.21143 -9.93453 -8.43281 -8.20465 -6.32109 -0.47072 -0.13360 0.85463 0.96729 1.40979 1.41145 1.54400 2.06689 2.07299 2.41562 3.06337 3.13331 3.48385 3.69088 3.78525 3.98799 4.12751 4.18195 4.21349 4.37218 4.38385 4.53688 4.67000 4.77064 4.88100 4.94067 5.04642 5.09045 5.14948 5.36615 5.47935 5.50260 5.52783 5.69139 5.82886 5.91839 5.94388 6.21159 6.26462 6.85381 7.08919 7.37588 8.91869 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.003273 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.514262 B = 8553.676521 C =10061.440445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.145 3.855 12 N -0.695 5.695 13 C 0.448 3.552 14 N -0.600 5.600 15 C 0.193 3.807 16 Cl -0.048 7.048 17 C -0.204 4.204 18 C 0.001 3.999 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.160 4.160 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.421 0.579 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.771 -25.356 0.000 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.021 3.979 12 N -0.328 5.328 13 C 0.199 3.801 14 N -0.324 5.324 15 C 0.041 3.959 16 Cl -0.019 7.019 17 C -0.229 4.229 18 C -0.004 4.004 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.261 0.739 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.680 -24.468 -0.001 26.314 hybrid contribution 0.095 0.780 0.001 0.786 sum 9.776 -23.688 -0.001 25.626 Atomic orbital electron populations 1.70121 1.07954 1.27742 1.51696 1.26033 0.95751 1.03579 0.94765 0.85360 0.79211 0.78597 0.77638 1.18154 1.20564 1.20554 1.21705 0.93730 0.92002 1.50423 0.91564 1.18908 0.94355 0.92877 0.95029 1.21612 0.98533 0.92035 1.01943 1.21174 0.91415 0.84634 1.00654 1.44632 1.09886 1.01192 1.77111 1.18421 0.87341 0.86033 0.88330 1.66039 1.14750 1.24798 1.26814 1.20752 0.86722 0.89244 0.99212 1.98376 1.10645 1.96335 1.96584 1.21389 0.92135 0.99166 1.10208 1.18102 0.93269 0.92850 0.96159 1.21218 0.93201 0.98332 1.01305 1.21454 0.95550 0.98055 0.94946 1.21279 1.01423 0.92071 0.99587 1.21059 0.90599 1.01142 0.98109 1.18638 0.95199 0.92567 1.10166 0.92806 0.98999 0.99006 0.91511 0.91504 0.93318 0.93310 0.73890 0.81747 0.82384 0.82028 0.82599 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.37 4.97 29.84 0.15 1.52 16 10 C -0.10 -4.04 5.27 30.59 0.16 -3.88 16 11 C 0.15 5.24 5.70 86.38 0.49 5.73 16 12 N -0.70 -20.10 5.63 -344.00 -1.94 -22.04 16 13 C 0.45 13.49 7.53 133.92 1.01 14.50 16 14 N -0.60 -20.50 9.49 -184.20 -1.75 -22.25 16 15 C 0.19 5.68 7.21 84.09 0.61 6.29 16 16 Cl -0.05 -1.31 29.06 -2.72 -0.08 -1.39 16 17 C -0.20 -4.75 9.59 22.43 0.22 -4.53 16 18 C 0.00 0.03 5.74 -21.30 -0.12 -0.10 16 19 C -0.12 -1.75 9.81 22.29 0.22 -1.53 16 20 C -0.08 -0.89 9.95 22.07 0.22 -0.67 16 21 C -0.13 -1.56 9.95 22.07 0.22 -1.34 16 22 C -0.09 -1.58 9.52 22.27 0.21 -1.37 16 23 C -0.16 -3.88 5.75 -21.21 -0.12 -4.00 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H 0.07 2.44 8.14 -2.38 -0.02 2.43 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.42 9.56 6.62 -92.71 -0.61 8.95 16 32 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.14 1.99 6.51 -2.91 -0.02 1.97 16 Total: -1.00 -70.79 324.16 2.98 -67.81 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.48 Total: 8.36 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.95 Total: -19.29 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.40 Total: -101.54 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -70.79 2.98 -67.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.830 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds