Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99457 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.46710 * 149.99898 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.39212 * 119.99807 * 179.72545 * 12 11 10 14 14 C 1.38050 * 119.23920 * 0.02562 * 13 12 11 15 15 C 1.40397 * 118.53121 * 179.72373 * 14 13 12 16 16 C 1.40453 * 122.13497 * 180.27313 * 15 14 13 17 17 Cl 1.73594 * 120.27003 * 0.26749 * 16 15 14 18 18 C 1.36279 * 119.45926 * 180.31373 * 16 15 14 19 19 C 1.39397 * 121.00284 * 359.95600 * 18 16 15 20 20 C 1.36136 * 121.13518 * 0.02562 * 19 18 16 21 21 C 1.40454 * 119.57504 * 0.02562 * 20 19 18 22 22 C 1.40302 * 121.92677 * 179.97438 * 21 20 19 23 23 N 1.31254 * 120.15599 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.07997 * 120.72996 * 359.97438 * 14 13 12 33 33 H 1.07994 * 119.50163 * 179.97438 * 18 16 15 34 34 H 1.08005 * 119.43176 * 180.02562 * 19 18 16 35 35 H 1.08000 * 120.21225 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.92617 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0400 -4.0175 0.0040 13 6 7.4087 -4.2718 -0.0015 14 6 8.2917 -3.2107 -0.0081 15 6 9.6688 -3.4842 -0.0076 16 6 10.6333 -2.4631 -0.0083 17 17 10.1443 -0.7975 -0.0028 18 6 11.9561 -2.7907 -0.0143 19 6 12.3658 -4.1231 -0.0188 20 6 11.4590 -5.1384 -0.0180 21 6 10.0861 -4.8417 -0.0129 22 6 9.1094 -5.8489 -0.0123 23 7 7.8356 -5.5321 -0.0080 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8910 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1496 0.8925 29 1 5.9150 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8881 31 1 5.4098 -4.7549 0.0045 32 1 7.9311 -2.1927 -0.0093 33 1 12.6982 -2.0062 -0.0153 34 1 13.4209 -4.3539 -0.0232 35 1 11.7930 -6.1655 -0.0211 36 1 9.4061 -6.8872 -0.0154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 36.260724 kcal Electronic energy + Delta-G solvation = -19287.733997 eV Core-core repulsion = 16182.912057 eV Total energy + Delta-G solvation = -3104.821940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94394 -38.18993 -36.73105 -35.97314 -33.65973 -32.57971 -31.78627 -30.93310 -28.74587 -26.80975 -24.65287 -23.40370 -22.54923 -22.00397 -20.36260 -18.28061 -17.81571 -16.97591 -16.70195 -15.70970 -15.34859 -15.25528 -14.83521 -14.44197 -14.15409 -14.12554 -13.71483 -13.30254 -13.21497 -12.71101 -12.34382 -12.33537 -11.96687 -11.67713 -11.63292 -11.14597 -10.97522 -10.96793 -10.31529 -10.08332 -9.91976 -9.78131 -9.68975 -9.66405 -9.26639 -8.78813 -8.58494 -7.37099 -6.08793 -4.07864 0.15705 0.81647 1.71694 1.95145 2.85432 3.17457 3.28197 3.36014 3.38767 3.93187 4.33921 4.41209 4.42105 4.59877 4.69496 4.81689 4.90121 5.23963 5.24804 5.38803 5.41765 5.52145 5.57692 5.63445 5.74238 5.88302 6.00420 6.11399 6.24985 6.36484 6.42639 6.50694 6.71450 7.00219 7.17411 7.30894 7.58999 7.73014 8.04855 8.47689 8.95256 9.52951 11.04518 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.003416 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.626346 B = 8195.884894 C = 9448.746114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.112 4.112 11 C 0.119 3.881 12 N -0.715 5.715 13 C 0.401 3.599 14 C -0.250 4.250 15 C 0.033 3.967 16 C -0.051 4.051 17 Cl -0.061 7.061 18 C -0.076 4.076 19 C -0.146 4.146 20 C -0.058 4.058 21 C -0.163 4.163 22 C 0.197 3.803 23 N -0.530 5.530 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.406 0.594 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.871 -9.408 -0.009 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.150 4.150 11 C -0.004 4.004 12 N -0.342 5.342 13 C 0.175 3.825 14 C -0.277 4.277 15 C 0.027 3.973 16 C -0.078 4.078 17 Cl -0.032 7.032 18 C -0.096 4.096 19 C -0.165 4.165 20 C -0.078 4.078 21 C -0.167 4.167 22 C 0.023 3.977 23 N -0.243 5.243 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.241 0.759 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 25.778 -9.468 -0.002 27.462 hybrid contribution 0.644 1.522 -0.022 1.652 sum 26.421 -7.947 -0.023 27.591 Atomic orbital electron populations 1.69909 1.06319 1.26991 1.50885 1.25030 0.94747 0.99214 0.94456 0.86780 0.80379 0.83578 0.78581 1.20218 1.21314 1.18947 1.21086 0.89260 0.94563 1.51180 0.90973 1.19499 0.97400 0.91279 0.96598 1.21687 0.90177 1.01118 1.02067 1.21770 0.96902 0.80569 1.01182 1.44943 1.02140 1.09191 1.77973 1.18191 0.86059 0.88212 0.90081 1.21273 0.91359 1.00002 1.15069 1.17584 0.92811 0.91623 0.95297 1.20525 0.93804 0.85246 1.08200 1.98378 1.92112 1.15836 1.96878 1.20848 0.93929 0.97473 0.97311 1.20656 1.00078 0.91633 1.04146 1.20988 0.91275 0.99783 0.95706 1.18733 0.95235 0.93028 1.09702 1.22878 0.86131 0.98777 0.89894 1.66846 1.19028 1.20253 1.18207 0.92652 0.96315 0.96747 0.91937 0.91899 0.91973 0.91985 0.75879 0.84060 0.84999 0.85182 0.84820 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.12 1.87 4.87 -4.04 -0.02 1.85 16 12 N -0.71 -10.43 5.74 -60.50 -0.35 -10.78 16 13 C 0.40 5.84 7.63 -154.65 -1.18 4.66 16 14 C -0.25 -3.54 8.75 -38.84 -0.34 -3.88 16 15 C 0.03 0.42 5.75 -106.80 -0.61 -0.20 16 16 C -0.05 -0.58 6.32 -39.45 -0.25 -0.83 16 17 Cl -0.06 -0.72 27.64 -51.86 -1.43 -2.15 16 18 C -0.08 -0.68 9.73 -39.86 -0.39 -1.07 16 19 C -0.15 -1.08 9.94 -39.91 -0.40 -1.48 16 20 C -0.06 -0.44 9.80 -39.50 -0.39 -0.83 16 21 C -0.16 -1.73 5.74 -106.84 -0.61 -2.34 16 22 C 0.20 2.04 11.02 -17.02 -0.19 1.85 16 23 N -0.53 -7.11 10.32 -12.09 -0.12 -7.24 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 30 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 31 H 0.41 5.60 8.59 -40.82 -0.35 5.25 16 32 H 0.14 2.03 5.71 -52.49 -0.30 1.73 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -31.71 319.57 -10.41 -42.12 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.36 Total: 1.36 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -5.06 Total: -18.03 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.30 Total: -44.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.43 Total: -2.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.71 -10.41 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.376 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds