Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99457 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.46710 * 149.99898 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.39212 * 119.99807 * 179.72545 * 12 11 10 14 14 C 1.38050 * 119.23920 * 0.02562 * 13 12 11 15 15 C 1.40397 * 118.53121 * 179.72373 * 14 13 12 16 16 C 1.40453 * 122.13497 * 180.27313 * 15 14 13 17 17 Cl 1.73594 * 120.27003 * 0.26749 * 16 15 14 18 18 C 1.36279 * 119.45926 * 180.31373 * 16 15 14 19 19 C 1.39397 * 121.00284 * 359.95600 * 18 16 15 20 20 C 1.36136 * 121.13518 * 0.02562 * 19 18 16 21 21 C 1.40454 * 119.57504 * 0.02562 * 20 19 18 22 22 C 1.40302 * 121.92677 * 179.97438 * 21 20 19 23 23 N 1.31254 * 120.15599 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.07997 * 120.72996 * 359.97438 * 14 13 12 33 33 H 1.07994 * 119.50163 * 179.97438 * 18 16 15 34 34 H 1.08005 * 119.43176 * 180.02562 * 19 18 16 35 35 H 1.08000 * 120.21225 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.92617 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0400 -4.0175 0.0040 13 6 7.4087 -4.2718 -0.0015 14 6 8.2917 -3.2107 -0.0081 15 6 9.6688 -3.4842 -0.0076 16 6 10.6333 -2.4631 -0.0083 17 17 10.1443 -0.7975 -0.0028 18 6 11.9561 -2.7907 -0.0143 19 6 12.3658 -4.1231 -0.0188 20 6 11.4590 -5.1384 -0.0180 21 6 10.0861 -4.8417 -0.0129 22 6 9.1094 -5.8489 -0.0123 23 7 7.8356 -5.5321 -0.0080 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8910 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1496 0.8925 29 1 5.9150 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8881 31 1 5.4098 -4.7549 0.0045 32 1 7.9311 -2.1927 -0.0093 33 1 12.6982 -2.0062 -0.0153 34 1 13.4209 -4.3539 -0.0232 35 1 11.7930 -6.1655 -0.0211 36 1 9.4061 -6.8872 -0.0154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = 17.722599 kcal Electronic energy + Delta-G solvation = -19288.537871 eV Core-core repulsion = 16182.912057 eV Total energy + Delta-G solvation = -3105.625813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77154 -39.06919 -37.65624 -37.05589 -35.38418 -33.73421 -33.17764 -31.88703 -29.88367 -28.25379 -25.68052 -24.60035 -23.45127 -23.09554 -21.98630 -19.21909 -19.02359 -18.49915 -17.76737 -16.54632 -16.53951 -16.43903 -16.10237 -15.64674 -15.48640 -14.94498 -14.75144 -14.62968 -14.28871 -14.06842 -13.78036 -13.65147 -13.04232 -12.83121 -12.73756 -12.42581 -12.35428 -11.90055 -11.81424 -11.75411 -11.67480 -11.37027 -11.13825 -10.78842 -10.57719 -10.55896 -9.62210 -8.31782 -8.31360 -6.36487 -0.59763 0.01206 0.91270 1.17203 1.35143 1.36756 1.48536 2.09749 2.12004 2.34263 3.03752 3.09753 3.53396 3.71476 3.89749 3.93552 3.99947 4.05269 4.13353 4.29168 4.43982 4.53646 4.64474 4.73270 4.82787 4.83182 4.89843 4.98156 5.03485 5.32195 5.39281 5.43005 5.51158 5.51731 5.62133 5.82439 5.95931 6.24923 6.56872 6.71683 7.09740 7.28282 8.85022 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.003416 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.626346 B = 8195.884894 C = 9448.746114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.008 4.008 10 C -0.101 4.101 11 C 0.138 3.862 12 N -0.721 5.721 13 C 0.383 3.617 14 C -0.272 4.272 15 C 0.013 3.987 16 C -0.080 4.080 17 Cl -0.077 7.077 18 C -0.066 4.066 19 C -0.142 4.142 20 C -0.047 4.047 21 C -0.172 4.172 22 C 0.205 3.795 23 N -0.555 5.555 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.406 0.594 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.189 -10.223 -0.030 32.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.046 4.046 10 C -0.139 4.139 11 C 0.013 3.987 12 N -0.351 5.351 13 C 0.159 3.841 14 C -0.299 4.299 15 C 0.007 3.993 16 C -0.107 4.107 17 Cl -0.048 7.048 18 C -0.085 4.085 19 C -0.161 4.161 20 C -0.066 4.066 21 C -0.176 4.176 22 C 0.032 3.968 23 N -0.269 5.269 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.242 0.758 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 30.134 -10.304 -0.024 31.847 hybrid contribution -0.534 1.612 -0.017 1.698 sum 29.600 -8.692 -0.041 30.850 Atomic orbital electron populations 1.70066 1.08339 1.28232 1.52589 1.26028 0.95624 1.03589 0.94070 0.85660 0.79570 0.78182 0.79284 1.19098 1.20981 1.16827 1.21467 0.92037 0.93188 1.50522 0.94884 1.19438 0.93983 0.94208 0.97012 1.21455 0.92405 0.98319 1.01716 1.21391 0.94342 0.81620 1.01302 1.44725 1.02670 1.08404 1.79255 1.18279 0.85672 0.89027 0.91156 1.21249 0.92440 0.99347 1.16871 1.17853 0.92424 0.93231 0.95770 1.20682 0.94720 0.84470 1.10870 1.98363 1.92393 1.16921 1.97119 1.21265 0.93192 0.99178 0.94909 1.21146 1.02045 0.90555 1.02327 1.21471 0.89565 1.02109 0.93459 1.19084 0.97006 0.92081 1.09439 1.23657 0.85065 1.00708 0.87364 1.66887 1.20691 1.19568 1.19755 0.92446 0.95764 0.95875 0.92330 0.92329 0.91945 0.91886 0.75818 0.85308 0.83098 0.81433 0.80613 0.77293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.14 4.38 4.87 86.38 0.42 4.80 16 12 N -0.72 -21.51 5.74 -345.33 -1.98 -23.49 16 13 C 0.38 11.23 7.63 132.53 1.01 12.24 16 14 C -0.27 -7.80 8.75 22.75 0.20 -7.60 16 15 C 0.01 0.32 5.75 -21.28 -0.12 0.20 16 16 C -0.08 -1.75 6.32 22.35 0.14 -1.61 16 17 Cl -0.08 -1.80 27.64 -2.72 -0.08 -1.87 16 18 C -0.07 -0.98 9.73 22.09 0.21 -0.76 16 19 C -0.14 -1.42 9.94 22.06 0.22 -1.20 16 20 C -0.05 -0.49 9.80 22.32 0.22 -0.27 16 21 C -0.17 -3.18 5.74 -21.30 -0.12 -3.30 16 22 C 0.20 3.70 11.02 85.28 0.94 4.64 16 23 N -0.56 -14.38 10.32 -192.16 -1.98 -16.37 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 26 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.97 7.92 -2.38 -0.02 1.95 16 30 H 0.06 1.98 7.89 -2.39 -0.02 1.96 16 31 H 0.41 11.56 8.59 -92.71 -0.80 10.77 16 32 H 0.13 3.86 5.71 -2.91 -0.02 3.84 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -72.14 319.57 2.51 -69.63 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.25 Total: 12.57 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.11 Total: -26.84 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.66 Total: -99.86 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.87 kcal Total: -72.14 2.51 -69.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.354 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds