Wall clock time and date at job start Tue Mar 31 2020 08:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48505 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47319 * 299.99749 * 3 2 1 6 6 H 1.48505 * 109.46945 * 59.99723 * 3 2 1 7 7 C 1.37879 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47366 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47289 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.39876 * 120.00227 * 179.97438 * 12 11 10 14 14 C 1.39329 * 119.87426 * 359.72673 * 13 12 11 15 15 C 1.37929 * 120.61390 * 180.27475 * 14 13 12 16 16 C 1.38622 * 119.88924 * 359.97438 * 15 14 13 17 17 O 1.35278 * 121.58741 * 179.97438 * 16 15 14 18 18 C 1.34301 * 120.71512 * 180.02562 * 17 16 15 19 19 O 1.21785 * 118.53067 * 179.97438 * 18 17 16 20 20 N 1.33368 * 122.94298 * 359.97438 * 18 17 16 21 21 C 1.32299 * 121.32068 * 0.02562 * 20 18 17 22 22 O 1.34885 * 120.92170 * 180.02562 * 21 20 18 23 23 C 1.40602 * 119.74158 * 0.02562 * 16 15 14 24 24 C 1.38415 * 119.87703 * 179.97438 * 13 12 11 25 25 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47475 * 59.99331 * 9 7 2 27 27 H 1.09007 * 109.47268 * 299.99305 * 9 7 2 28 28 H 1.09003 * 109.46492 * 59.99511 * 10 9 7 29 29 H 1.08999 * 109.46897 * 300.00372 * 10 9 7 30 30 H 1.08990 * 109.47279 * 60.00274 * 11 10 9 31 31 H 1.09002 * 109.47053 * 299.99711 * 11 10 9 32 32 H 0.97001 * 119.99952 * 0.02562 * 12 11 10 33 33 H 1.08001 * 119.69467 * 0.27071 * 14 13 12 34 34 H 1.07994 * 120.05324 * 180.02562 * 15 14 13 35 35 H 0.96705 * 116.99747 * 269.97561 * 22 21 20 36 36 H 1.08007 * 120.28881 * 359.70339 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0018 13 6 1.9658 -7.4194 0.0030 14 6 0.5954 -7.6710 0.0094 15 6 0.1189 -8.9653 0.0163 16 6 1.0081 -10.0288 0.0165 17 8 0.5786 -11.3116 0.0237 18 6 1.4557 -12.3286 0.0242 19 8 1.0253 -13.4679 0.0313 20 7 2.7769 -12.1470 0.0173 21 6 3.3043 -10.9336 0.0100 22 8 4.6418 -10.7592 0.0025 23 6 2.3921 -9.7808 0.0101 24 6 2.8675 -8.4695 0.0030 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.8532 -5.0451 -0.8885 31 1 0.8538 -5.0445 0.8914 32 1 3.3857 -5.9234 0.0021 33 1 -0.1002 -6.8448 0.0089 34 1 -0.9451 -9.1499 0.0208 35 1 5.0814 -10.6987 0.8617 36 1 3.9300 -8.2753 -0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:02 Heat of formation + Delta-G solvation = -60.871964 kcal Electronic energy + Delta-G solvation = -21397.502464 eV Core-core repulsion = 17847.759370 eV Total energy + Delta-G solvation = -3549.743094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.33603 -39.61313 -38.96206 -37.77466 -35.92339 -35.05322 -33.65551 -31.86124 -31.47584 -29.07280 -26.58783 -25.50745 -24.34599 -23.29799 -22.78408 -20.62906 -20.24274 -19.97637 -18.35649 -17.52928 -17.24358 -16.55086 -16.25341 -16.07149 -15.54839 -15.10972 -15.07672 -14.63317 -14.48473 -13.99031 -13.88704 -13.12460 -12.96828 -12.89823 -12.45793 -12.12178 -12.09196 -11.81873 -11.34799 -11.29984 -11.01373 -10.89419 -10.65785 -10.27927 -10.17841 -9.83755 -9.63571 -9.51270 -9.26197 -8.50052 -7.59368 -6.14866 -4.18116 -0.45522 0.81895 1.05692 2.08818 2.38465 2.74746 3.20450 3.21434 3.29835 3.32815 3.37591 3.55293 3.99940 4.33821 4.45313 4.60464 4.81992 4.87580 5.20052 5.21677 5.30430 5.45236 5.47323 5.54602 5.79177 5.85516 5.97648 6.08609 6.36397 6.43034 6.72242 6.78794 7.06178 7.27602 7.47041 7.50878 7.53482 7.57955 7.83012 8.23992 8.88525 9.47173 10.96404 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.042419 B = 0.002425 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.925075 B =11541.805496 C =12173.576729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.735 5.735 13 C 0.205 3.795 14 C -0.114 4.114 15 C -0.085 4.085 16 C 0.101 3.899 17 O -0.290 6.290 18 C 0.627 3.373 19 O -0.453 6.453 20 N -0.572 5.572 21 C 0.509 3.491 22 O -0.471 6.471 23 C -0.179 4.179 24 C -0.120 4.120 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.432 0.568 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -16.622 1.786 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.008 4.008 12 N -0.362 5.362 13 C 0.098 3.902 14 C -0.138 4.138 15 C -0.104 4.104 16 C 0.053 3.947 17 O -0.196 6.196 18 C 0.380 3.620 19 O -0.336 6.336 20 N -0.325 5.325 21 C 0.299 3.701 22 O -0.283 6.283 23 C -0.184 4.184 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.238 0.762 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.298 0.702 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.224 -17.801 1.240 18.593 hybrid contribution 0.720 1.701 0.410 1.892 sum 5.944 -16.100 1.650 17.242 Atomic orbital electron populations 1.69961 1.06073 1.26739 1.50491 1.25027 0.94875 0.99393 0.95126 0.86522 0.80053 0.83647 0.77700 1.19741 1.20926 1.20935 1.21214 0.93049 0.90885 1.51080 0.92593 1.19035 0.93802 0.90945 0.97566 1.21857 0.99845 0.93027 1.01117 1.21761 0.92224 0.85794 1.01042 1.45154 1.09576 1.01666 1.79792 1.17873 0.92479 0.85684 0.94119 1.21011 0.94230 0.96698 1.01831 1.20302 0.99948 0.89033 1.01098 1.18783 0.91022 0.81955 1.02958 1.83944 1.43197 1.14009 1.78466 1.19619 0.81257 0.84328 0.76805 1.91053 1.77322 1.16560 1.48669 1.69509 1.12268 1.24413 1.26299 1.21445 0.84254 0.86649 0.77715 1.83950 1.14374 1.93415 1.36596 1.19428 0.92165 0.94652 1.12178 1.20400 1.00017 0.88884 1.05281 0.92888 0.96302 0.96303 0.92616 0.92589 0.92047 0.92054 0.76176 0.83406 0.83258 0.70219 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.70 9.11 -34.44 -0.31 -14.01 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.12 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.11 1.47 4.91 -4.04 -0.02 1.45 16 12 N -0.73 -7.40 5.74 -58.60 -0.34 -7.74 16 13 C 0.21 1.93 6.65 -83.72 -0.56 1.37 16 14 C -0.11 -1.05 9.29 -39.29 -0.36 -1.41 16 15 C -0.08 -0.77 10.01 -39.55 -0.40 -1.17 16 16 C 0.10 1.10 6.77 -38.55 -0.26 0.83 16 17 O -0.29 -3.81 9.90 -21.79 -0.22 -4.03 16 18 C 0.63 9.23 8.75 53.43 0.47 9.70 16 19 O -0.45 -8.02 18.04 -19.63 -0.35 -8.38 16 20 N -0.57 -7.36 10.45 -15.13 -0.16 -7.52 16 21 C 0.51 4.75 8.14 -13.80 -0.11 4.64 16 22 O -0.47 -2.77 12.92 -16.38 -0.21 -2.98 16 23 C -0.18 -1.68 5.88 -104.99 -0.62 -2.30 16 24 C -0.12 -0.97 9.53 -39.05 -0.37 -1.34 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 31 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 32 H 0.40 3.51 8.48 -40.82 -0.35 3.17 16 33 H 0.15 1.25 6.69 -52.49 -0.35 0.90 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.43 0.01 9.15 45.56 0.42 0.43 16 36 H 0.14 0.82 7.78 -52.48 -0.41 0.41 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -33.49 320.60 -6.82 -40.31 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.17 Total: -2.79 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.92 Total: -2.52 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.24 Total: -39.92 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.78 Total: -15.39 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.49 -6.82 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.563 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds