Wall clock time and date at job start Tue Mar 31 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86808 * 120.00301 * 2 1 4 4 H 1.48500 * 109.46799 * 272.27598 * 3 2 1 5 5 H 1.48503 * 109.46675 * 32.27214 * 3 2 1 6 6 H 1.48498 * 109.47206 * 152.27433 * 3 2 1 7 7 C 1.39908 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99787 * 345.18906 * 7 2 1 9 9 C 1.41291 * 120.00278 * 165.19037 * 7 2 1 10 10 C 1.40623 * 120.22639 * 330.13025 * 9 7 2 11 11 C 1.38199 * 119.70933 * 180.28021 * 10 9 7 12 12 N 1.39761 * 119.91765 * 179.97438 * 11 10 9 13 13 C 1.40152 * 119.99569 * 221.39024 * 12 11 10 14 14 C 1.38814 * 120.01067 * 7.66282 * 13 12 11 15 15 C 1.38119 * 120.01855 * 179.74735 * 14 13 12 16 16 C 1.38871 * 120.04020 * 0.51019 * 15 14 13 17 17 N 1.39962 * 119.99029 * 179.74236 * 16 15 14 18 18 C 1.38864 * 120.01868 * 359.77070 * 16 15 14 19 19 C 1.38245 * 119.97442 * 359.97438 * 18 16 15 20 20 F 1.35103 * 120.01775 * 179.97438 * 19 18 16 21 21 C 1.39444 * 120.16451 * 0.02562 * 11 10 9 22 22 C 1.38351 * 120.46230 * 359.96292 * 21 11 10 23 23 C 1.38021 * 120.29299 * 0.04129 * 22 21 11 24 24 F 1.35102 * 120.08726 * 179.97438 * 23 22 21 25 25 H 0.97003 * 119.99678 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.14403 * 0.25229 * 10 9 7 27 27 H 0.96996 * 120.00787 * 41.37835 * 12 11 10 28 28 H 1.07994 * 119.98921 * 359.97438 * 14 13 12 29 29 H 1.08003 * 119.97873 * 180.23662 * 15 14 13 30 30 H 0.97002 * 119.99817 * 180.02562 * 17 16 15 31 31 H 0.96999 * 120.00362 * 0.02735 * 17 16 15 32 32 H 1.07996 * 120.01315 * 179.97438 * 18 16 15 33 33 H 1.07995 * 119.76936 * 179.97438 * 21 11 10 34 34 H 1.07999 * 119.85796 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4420 2.0742 -1.3990 5 1 1.4649 2.6383 0.7476 6 1 3.5634 1.4267 0.6514 7 6 2.0081 -1.2116 -0.0005 8 1 1.4950 -2.1315 0.2381 9 6 3.3858 -1.2319 -0.3133 10 6 3.9270 -0.2742 -1.1893 11 6 5.2750 -0.3074 -1.4924 12 7 5.8174 0.6420 -2.3628 13 6 6.7588 0.2530 -3.3254 14 6 7.0350 -1.0931 -3.5222 15 6 7.9590 -1.4769 -4.4745 16 6 8.6202 -0.5162 -5.2284 17 7 9.5603 -0.9061 -6.1893 18 6 8.3495 0.8311 -5.0288 19 6 7.4209 1.2157 -4.0796 20 9 7.1572 2.5263 -3.8843 21 6 6.0950 -1.2866 -0.9326 22 6 5.5699 -2.2320 -0.0698 23 6 4.2264 -2.2165 0.2459 24 9 3.7179 -3.1421 1.0885 25 1 -0.4850 0.8401 -0.0004 26 1 3.2920 0.4838 -1.6236 27 1 5.5422 1.5700 -2.3010 28 1 6.5246 -1.8406 -2.9332 29 1 8.1706 -2.5245 -4.6297 30 1 10.0225 -0.2352 -6.7157 31 1 9.7495 -1.8471 -6.3288 32 1 8.8641 1.5781 -5.6149 33 1 7.1474 -1.3069 -1.1742 34 1 6.2141 -2.9857 0.3584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174484077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:58 Heat of formation + Delta-G solvation = -40.609371 kcal Electronic energy + Delta-G solvation = -22050.362587 eV Core-core repulsion = 18390.410630 eV Total energy + Delta-G solvation = -3659.951958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.65518 -47.37610 -39.56159 -38.00683 -35.60340 -33.76085 -32.89035 -30.83719 -30.28980 -28.85197 -26.46756 -25.38395 -23.04520 -21.93182 -21.75529 -20.24781 -17.93941 -17.70682 -17.47773 -16.66782 -16.36145 -15.99687 -15.46215 -15.15755 -15.02908 -14.82675 -14.56177 -14.19619 -13.69564 -13.49659 -13.05572 -12.88500 -12.82267 -12.32626 -12.29438 -12.01469 -11.86989 -11.50099 -11.20000 -11.06420 -10.88662 -10.42006 -10.09902 -9.82925 -9.43191 -9.04618 -8.69768 -7.91565 -7.60271 -7.09378 -6.46342 -4.64651 1.33786 1.64361 2.38012 2.41189 2.99131 3.11346 3.20366 3.68626 3.83964 3.84937 3.88604 4.29984 4.52921 4.91163 5.12527 5.16393 5.46755 5.65477 5.67801 5.79111 5.92268 6.15381 6.15865 6.32185 6.36314 6.43372 6.56955 6.74813 6.86963 7.01332 7.21212 7.29612 7.43781 7.48886 7.68061 7.71759 8.00101 8.07004 8.22055 8.45919 8.59252 9.92120 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.004990 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.900599 B = 5610.341721 C = 6632.823982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.430 4.430 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.252 4.252 11 C 0.195 3.805 12 N -0.686 5.686 13 C 0.136 3.864 14 C -0.111 4.111 15 C -0.160 4.160 16 C 0.185 3.815 17 N -0.884 5.884 18 C -0.194 4.194 19 C 0.066 3.934 20 F -0.145 7.145 21 C -0.253 4.253 22 C -0.091 4.091 23 C -0.026 4.026 24 F -0.157 7.157 25 H 0.289 0.711 26 H 0.112 0.888 27 H 0.404 0.596 28 H 0.152 0.848 29 H 0.125 0.875 30 H 0.394 0.606 31 H 0.397 0.603 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.447 1.239 -9.143 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.458 4.458 8 H 0.116 0.884 9 C 0.081 3.919 10 C -0.274 4.274 11 C 0.101 3.899 12 N -0.309 5.309 13 C 0.034 3.966 14 C -0.133 4.133 15 C -0.183 4.183 16 C 0.081 3.919 17 N -0.425 5.425 18 C -0.218 4.218 19 C 0.042 3.958 20 F -0.124 7.124 21 C -0.275 4.275 22 C -0.111 4.111 23 C -0.047 4.047 24 F -0.136 7.136 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.239 0.761 28 H 0.170 0.830 29 H 0.143 0.857 30 H 0.222 0.778 31 H 0.224 0.776 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.046 1.242 -8.980 16.718 hybrid contribution 0.177 1.177 -0.146 1.199 sum 14.223 2.419 -9.127 17.072 Atomic orbital electron populations 1.69667 1.08074 1.30634 1.33669 1.26191 0.94860 1.01780 0.90860 0.86281 0.81160 0.79410 0.79041 1.19488 1.21628 1.16566 1.19463 0.91595 0.96293 1.38458 0.88420 1.17475 0.93361 0.90536 0.90513 1.20680 0.92864 1.06219 1.07610 1.17348 0.91324 0.90630 0.90645 1.42004 1.44381 1.10143 1.34332 1.17671 0.93582 0.92862 0.92490 1.20988 0.99121 0.94031 0.99196 1.20473 1.00431 0.98490 0.98920 1.17276 0.91588 0.91848 0.91150 1.42305 1.46989 1.09967 1.43233 1.20114 1.03453 0.95149 1.03113 1.16830 1.00854 0.76868 1.01274 1.91425 1.93264 1.33020 1.94642 1.20112 0.98228 1.01930 1.07196 1.20426 0.93262 0.98964 0.98399 1.17717 0.91639 0.95489 0.99808 1.91309 1.88107 1.64576 1.69626 0.90061 0.87063 0.76062 0.83045 0.85709 0.77843 0.77558 0.85417 0.87074 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.85 13.93 55.55 0.77 -20.07 16 2 C 0.08 2.15 5.45 -17.34 -0.09 2.05 16 3 Si 0.91 20.31 24.43 -169.99 -4.15 16.15 16 4 H -0.27 -5.74 6.60 56.52 0.37 -5.36 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.24 -5.49 6.81 56.52 0.38 -5.11 16 7 C -0.43 -11.58 9.28 -37.80 -0.35 -11.93 16 8 H 0.10 2.80 7.97 -52.49 -0.42 2.38 16 9 C 0.09 2.15 5.14 -106.78 -0.55 1.60 16 10 C -0.25 -5.83 7.02 -38.70 -0.27 -6.10 16 11 C 0.20 4.03 5.87 -83.81 -0.49 3.54 16 12 N -0.69 -12.56 5.48 -8.33 -0.05 -12.60 16 13 C 0.14 2.25 6.43 -83.53 -0.54 1.71 16 14 C -0.11 -1.69 8.01 -39.41 -0.32 -2.01 16 15 C -0.16 -2.00 9.89 -39.39 -0.39 -2.39 16 16 C 0.19 2.15 6.76 -83.68 -0.57 1.59 16 17 N -0.88 -7.01 9.10 32.45 0.30 -6.71 16 18 C -0.19 -2.47 9.87 -39.35 -0.39 -2.86 16 19 C 0.07 1.00 7.31 -39.27 -0.29 0.71 16 20 F -0.14 -2.26 16.66 2.25 0.04 -2.22 16 21 C -0.25 -4.93 7.37 -39.09 -0.29 -5.22 16 22 C -0.09 -1.85 10.00 -39.62 -0.40 -2.24 16 23 C -0.03 -0.61 7.31 -38.61 -0.28 -0.90 16 24 F -0.16 -3.78 16.76 2.25 0.04 -3.75 16 25 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.11 2.59 4.37 -52.48 -0.23 2.36 16 27 H 0.40 7.06 8.34 -40.82 -0.34 6.72 16 28 H 0.15 2.45 5.33 -52.49 -0.28 2.17 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.39 2.42 8.84 -40.82 -0.36 2.06 16 31 H 0.40 2.43 8.84 -40.82 -0.36 2.07 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.95 6.60 -52.49 -0.35 1.60 16 34 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -27.75 295.35 -6.60 -34.35 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -2.79 Total: 12.86 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -5.21 Total: -22.46 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.02 Total: -39.39 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.08 Total: -5.97 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.15 Total: 16.15 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.75 -6.60 -34.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174484077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.263 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds