Wall clock time and date at job start Tue Mar 31 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86808 * 120.00301 * 2 1 4 4 H 1.48500 * 109.46799 * 272.27598 * 3 2 1 5 5 H 1.48503 * 109.46675 * 32.27214 * 3 2 1 6 6 H 1.48498 * 109.47206 * 152.27433 * 3 2 1 7 7 C 1.39908 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99787 * 345.18906 * 7 2 1 9 9 C 1.41291 * 120.00278 * 165.19037 * 7 2 1 10 10 C 1.40623 * 120.22639 * 330.13025 * 9 7 2 11 11 C 1.38199 * 119.70933 * 180.28021 * 10 9 7 12 12 N 1.39761 * 119.91765 * 179.97438 * 11 10 9 13 13 C 1.40152 * 119.99569 * 221.39024 * 12 11 10 14 14 C 1.38814 * 120.01067 * 7.66282 * 13 12 11 15 15 C 1.38119 * 120.01855 * 179.74735 * 14 13 12 16 16 C 1.38871 * 120.04020 * 0.51019 * 15 14 13 17 17 N 1.39962 * 119.99029 * 179.74236 * 16 15 14 18 18 C 1.38864 * 120.01868 * 359.77070 * 16 15 14 19 19 C 1.38245 * 119.97442 * 359.97438 * 18 16 15 20 20 F 1.35103 * 120.01775 * 179.97438 * 19 18 16 21 21 C 1.39444 * 120.16451 * 0.02562 * 11 10 9 22 22 C 1.38351 * 120.46230 * 359.96292 * 21 11 10 23 23 C 1.38021 * 120.29299 * 0.04129 * 22 21 11 24 24 F 1.35102 * 120.08726 * 179.97438 * 23 22 21 25 25 H 0.97003 * 119.99678 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.14403 * 0.25229 * 10 9 7 27 27 H 0.96996 * 120.00787 * 41.37835 * 12 11 10 28 28 H 1.07994 * 119.98921 * 359.97438 * 14 13 12 29 29 H 1.08003 * 119.97873 * 180.23662 * 15 14 13 30 30 H 0.97002 * 119.99817 * 180.02562 * 17 16 15 31 31 H 0.96999 * 120.00362 * 0.02735 * 17 16 15 32 32 H 1.07996 * 120.01315 * 179.97438 * 18 16 15 33 33 H 1.07995 * 119.76936 * 179.97438 * 21 11 10 34 34 H 1.07999 * 119.85796 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4420 2.0742 -1.3990 5 1 1.4649 2.6383 0.7476 6 1 3.5634 1.4267 0.6514 7 6 2.0081 -1.2116 -0.0005 8 1 1.4950 -2.1315 0.2381 9 6 3.3858 -1.2319 -0.3133 10 6 3.9270 -0.2742 -1.1893 11 6 5.2750 -0.3074 -1.4924 12 7 5.8174 0.6420 -2.3628 13 6 6.7588 0.2530 -3.3254 14 6 7.0350 -1.0931 -3.5222 15 6 7.9590 -1.4769 -4.4745 16 6 8.6202 -0.5162 -5.2284 17 7 9.5603 -0.9061 -6.1893 18 6 8.3495 0.8311 -5.0288 19 6 7.4209 1.2157 -4.0796 20 9 7.1572 2.5263 -3.8843 21 6 6.0950 -1.2866 -0.9326 22 6 5.5699 -2.2320 -0.0698 23 6 4.2264 -2.2165 0.2459 24 9 3.7179 -3.1421 1.0885 25 1 -0.4850 0.8401 -0.0004 26 1 3.2920 0.4838 -1.6236 27 1 5.5422 1.5700 -2.3010 28 1 6.5246 -1.8406 -2.9332 29 1 8.1706 -2.5245 -4.6297 30 1 10.0225 -0.2352 -6.7157 31 1 9.7495 -1.8471 -6.3288 32 1 8.8641 1.5781 -5.6149 33 1 7.1474 -1.3069 -1.1742 34 1 6.2141 -2.9857 0.3584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174484077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:57 Heat of formation + Delta-G solvation = -58.086528 kcal Electronic energy + Delta-G solvation = -22051.120454 eV Core-core repulsion = 18390.410630 eV Total energy + Delta-G solvation = -3660.709824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81276 -49.23299 -40.83626 -39.43021 -36.97962 -35.48559 -34.05236 -32.55738 -31.43611 -30.27854 -27.73189 -27.20123 -24.36809 -23.36556 -23.05392 -21.82870 -19.57799 -19.01649 -18.56034 -18.34029 -17.71052 -17.38228 -16.72096 -16.61145 -16.39729 -16.05842 -16.00473 -15.89790 -15.30280 -14.85077 -14.64011 -14.28371 -14.10246 -13.81664 -13.72251 -13.56653 -13.22370 -13.06580 -12.80327 -12.64714 -12.26601 -11.92603 -11.89241 -11.64909 -11.10883 -10.38579 -9.76168 -9.69222 -9.05274 -8.98796 -7.69887 -6.62042 0.27166 0.36707 0.62764 0.86394 1.19536 1.34302 1.42692 2.03996 2.36194 2.45839 2.84260 2.98888 3.26587 3.48249 3.88935 3.90515 4.13387 4.20610 4.40418 4.47477 4.62163 4.63961 4.82315 4.87051 5.07722 5.18482 5.22474 5.30414 5.38049 5.52052 5.61645 5.65668 5.78791 5.98101 6.11947 6.42168 6.57559 6.64342 6.69373 6.75959 7.12986 8.09142 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.004990 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.900599 B = 5610.341721 C = 6632.823982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.049 3.951 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.475 4.475 8 H 0.056 0.944 9 C 0.072 3.928 10 C -0.261 4.261 11 C 0.204 3.796 12 N -0.690 5.690 13 C 0.101 3.899 14 C -0.119 4.119 15 C -0.159 4.159 16 C 0.202 3.798 17 N -0.866 5.866 18 C -0.198 4.198 19 C 0.060 3.940 20 F -0.151 7.151 21 C -0.226 4.226 22 C -0.078 4.078 23 C -0.057 4.057 24 F -0.167 7.167 25 H 0.297 0.703 26 H 0.107 0.893 27 H 0.405 0.595 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.407 0.593 31 H 0.409 0.591 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.732 1.739 -11.299 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.166 4.166 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.174 1.174 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.068 3.932 10 C -0.284 4.284 11 C 0.108 3.892 12 N -0.315 5.315 13 C 0.001 3.999 14 C -0.141 4.141 15 C -0.182 4.182 16 C 0.096 3.904 17 N -0.408 5.408 18 C -0.222 4.222 19 C 0.037 3.963 20 F -0.130 7.130 21 C -0.247 4.247 22 C -0.097 4.097 23 C -0.078 4.078 24 F -0.147 7.147 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.241 0.759 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.236 0.764 31 H 0.239 0.761 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.393 1.728 -11.204 21.606 hybrid contribution -0.775 0.902 0.290 1.223 sum 17.618 2.630 -10.914 20.891 Atomic orbital electron populations 1.69695 1.09137 1.31795 1.36045 1.26838 0.95466 1.04134 0.90196 0.85482 0.79592 0.76163 0.79706 1.18051 1.20174 1.17368 1.19361 0.93062 0.95574 1.42418 0.92551 1.17609 0.92838 0.91791 0.91006 1.20710 0.94138 1.05888 1.07620 1.17413 0.90489 0.90995 0.90288 1.41919 1.45134 1.09653 1.34748 1.17853 0.94679 0.93851 0.93515 1.20961 0.99891 0.93138 1.00117 1.20718 0.99440 1.00087 0.97957 1.17364 0.91034 0.91291 0.90728 1.42319 1.45389 1.11309 1.41736 1.20373 1.02871 0.96304 1.02616 1.17055 1.01227 0.76426 1.01616 1.91409 1.93402 1.33443 1.94760 1.20507 0.99400 1.00126 1.04702 1.20783 0.92018 0.99419 0.97470 1.18079 0.93058 0.95767 1.00853 1.91274 1.88486 1.64868 1.70038 0.89214 0.87528 0.75904 0.84265 0.83083 0.76382 0.76071 0.83171 0.84029 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.52 13.93 21.82 0.30 -46.21 16 2 C 0.05 2.67 5.45 85.24 0.46 3.14 16 3 Si 0.97 42.85 24.43 68.60 1.68 44.53 16 4 H -0.26 -10.60 6.60 99.48 0.66 -9.94 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.25 -11.23 6.81 99.48 0.68 -10.55 16 7 C -0.48 -27.38 9.28 23.43 0.22 -27.16 16 8 H 0.06 3.56 7.97 -2.91 -0.02 3.54 16 9 C 0.07 3.70 5.14 -21.26 -0.11 3.59 16 10 C -0.26 -12.16 7.02 22.84 0.16 -12.00 16 11 C 0.20 8.15 5.87 38.16 0.22 8.37 16 12 N -0.69 -24.14 5.48 -180.27 -0.99 -25.12 16 13 C 0.10 3.10 6.43 38.15 0.25 3.34 16 14 C -0.12 -3.26 8.01 22.38 0.18 -3.08 16 15 C -0.16 -3.29 9.89 22.39 0.22 -3.07 16 16 C 0.20 3.75 6.76 38.14 0.26 4.01 16 17 N -0.87 -9.18 9.10 -51.24 -0.47 -9.65 16 18 C -0.20 -4.24 9.87 22.42 0.22 -4.02 16 19 C 0.06 1.67 7.31 22.47 0.16 1.84 16 20 F -0.15 -4.41 16.66 44.97 0.75 -3.66 16 21 C -0.23 -8.17 7.37 22.59 0.17 -8.00 16 22 C -0.08 -2.99 10.00 22.25 0.22 -2.77 16 23 C -0.06 -2.73 7.31 22.90 0.17 -2.56 16 24 F -0.17 -8.34 16.76 44.97 0.75 -7.59 16 25 H 0.30 14.66 8.30 -92.71 -0.77 13.89 16 26 H 0.11 5.00 4.37 -2.91 -0.01 4.99 16 27 H 0.41 13.67 8.34 -92.71 -0.77 12.89 16 28 H 0.14 4.10 5.33 -2.91 -0.02 4.09 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.41 2.85 8.84 -92.71 -0.82 2.03 16 31 H 0.41 2.80 8.84 -92.71 -0.82 1.98 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 4.35 6.60 -2.91 -0.02 4.33 16 34 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.77 295.35 3.55 -60.23 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -1.28 Total: 25.86 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 2.80 Total: -38.38 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.15 Total: -80.98 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 1.50 Total: -11.25 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.68 Total: 44.53 kcal Total: -63.77 3.55 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174484077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds