Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47000 * 108.80268 * 3 2 1 5 5 N 1.46499 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 3 7 7 C 1.50703 * 109.46877 * 90.00092 * 6 5 4 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00254 * 180.02562 * 9 7 6 11 11 Si 1.86811 * 119.99850 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46778 * 89.99559 * 11 9 7 13 13 H 1.48493 * 109.46886 * 209.99446 * 11 9 7 14 14 H 1.48492 * 109.47026 * 329.99859 * 11 9 7 15 15 C 1.34773 * 120.00036 * 270.27655 * 5 4 3 16 16 O 1.21281 * 120.00220 * 179.72597 * 15 5 4 17 17 C 1.50706 * 120.00080 * 359.72107 * 15 5 4 18 18 H 1.09001 * 115.54694 * 34.41723 * 17 15 5 19 19 C 1.52998 * 117.49994 * 248.75418 * 17 15 5 20 20 C 1.52993 * 117.50167 * 180.09051 * 17 15 5 21 21 H 1.09001 * 117.49986 * 214.97880 * 20 17 15 22 22 C 1.53000 * 117.49682 * 359.97438 * 20 17 15 23 23 F 1.39901 * 109.47255 * 60.00037 * 22 20 17 24 24 F 1.39905 * 109.46912 * 180.02562 * 22 20 17 25 25 F 1.39896 * 109.47414 * 300.00264 * 22 20 17 26 26 H 1.09003 * 109.47447 * 348.79961 * 3 2 1 27 27 H 1.08997 * 109.47023 * 228.80317 * 3 2 1 28 28 H 1.08994 * 109.47531 * 59.99578 * 4 3 2 29 29 H 1.09005 * 109.46544 * 299.99513 * 4 3 2 30 30 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 31 31 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 32 32 H 0.97008 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.09003 * 117.49928 * 359.97438 * 19 17 15 34 34 H 1.09001 * 117.50229 * 144.99284 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4658 -1.3655 5 7 4.5827 0.4671 -1.3654 6 6 5.3163 -0.7335 -1.7740 7 6 5.5676 -0.6874 -3.2592 8 1 5.2164 0.1524 -3.8405 9 6 6.2468 -1.7167 -3.8757 10 7 6.4665 -1.6763 -5.1717 11 14 6.8549 -3.1689 -2.8701 12 1 5.8042 -4.2176 -2.8298 13 1 8.0835 -3.7228 -3.4935 14 1 7.1600 -2.7205 -1.4878 15 6 5.2556 1.5708 -0.9839 16 8 6.4684 1.5702 -0.9790 17 6 4.5010 2.8057 -0.5636 18 1 3.5612 2.6272 -0.0412 19 6 4.5781 4.0273 -1.4815 20 6 5.3220 4.0265 -0.1436 21 1 4.9221 4.6515 0.6549 22 6 6.8462 3.9000 -0.1820 23 9 7.2574 3.6092 -1.4872 24 9 7.4247 5.1046 0.2323 25 9 7.2504 2.8703 0.6744 26 1 2.9718 -1.0073 0.1996 27 1 2.9710 0.6777 0.7733 28 1 2.7540 1.4737 -1.5652 29 1 2.7547 -0.2114 -2.1387 30 1 6.2687 -0.7747 -1.2455 31 1 4.7280 -1.6186 -1.5323 32 1 6.9440 -2.4007 -5.6055 33 1 5.1749 3.9380 -2.3892 34 1 3.6890 4.6526 -1.5629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182323400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = -126.410569 kcal Electronic energy + Delta-G solvation = -23862.409701 eV Core-core repulsion = 19767.967900 eV Total energy + Delta-G solvation = -4094.441802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.57720 -47.18444 -46.93392 -39.87024 -37.18878 -36.52319 -35.32508 -32.80217 -31.08661 -28.46727 -26.77022 -24.63338 -23.93756 -21.99848 -21.33812 -18.92319 -18.39125 -17.82373 -17.74586 -17.12724 -16.82570 -16.49502 -15.31292 -15.14596 -14.79278 -14.45153 -14.08205 -13.92991 -13.85374 -13.69223 -13.46351 -13.30022 -13.09430 -12.93442 -12.73876 -12.55072 -12.41880 -12.04324 -11.93680 -11.71554 -11.49337 -11.12841 -11.02426 -10.96096 -10.75675 -10.56666 -10.18137 -9.62045 -9.23522 -8.64316 -7.97288 -6.13478 -4.13297 2.55977 2.70908 2.73537 3.01240 3.22918 3.26695 3.34923 3.35516 3.56970 3.97375 4.15251 4.19849 4.35049 4.43408 4.58615 4.82581 4.95597 4.99477 5.03598 5.11700 5.19466 5.33045 5.43601 5.46086 5.68169 5.81291 5.97204 6.50378 6.86511 7.12044 7.47060 7.53136 7.97959 8.38604 8.71453 8.90106 9.45858 10.99682 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.007054 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.796690 B = 3968.587062 C = 5744.263997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.584 5.584 6 C 0.216 3.784 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.872 3.128 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.262 1.262 15 C 0.529 3.471 16 O -0.512 6.512 17 C -0.162 4.162 18 H 0.136 0.864 19 C -0.124 4.124 20 C -0.203 4.203 21 H 0.148 0.852 22 C 0.492 3.508 23 F -0.165 7.165 24 F -0.196 7.196 25 F -0.169 7.169 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.120 0.880 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 10.093 11.720 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.094 4.094 4 C -0.010 4.010 5 N -0.315 5.315 6 C 0.096 3.904 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.187 1.187 15 C 0.315 3.685 16 O -0.387 6.387 17 C -0.184 4.184 18 H 0.154 0.846 19 C -0.161 4.161 20 C -0.223 4.223 21 H 0.166 0.834 22 C 0.438 3.562 23 F -0.146 7.146 24 F -0.177 7.177 25 F -0.150 7.150 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.295 9.946 11.549 16.490 hybrid contribution 0.894 -0.882 0.422 1.325 sum -5.401 9.064 11.971 15.957 Atomic orbital electron populations 1.81227 1.13005 1.09103 1.08558 1.29049 0.95043 0.93007 0.93183 1.19922 0.81502 1.06300 1.01643 1.21361 0.81681 1.03140 0.94791 1.47697 1.04952 1.14233 1.64597 1.19761 0.92599 0.81128 0.96934 1.21282 1.37267 1.07636 0.90804 0.90610 1.24843 0.95160 0.98094 0.94778 1.69886 1.41211 1.33071 1.09123 0.86907 0.79006 0.82974 0.81228 1.20099 1.20954 1.18698 1.19289 0.87569 0.83399 0.78277 1.90804 1.13168 1.82155 1.52590 1.22547 1.01268 0.89497 1.05040 0.84588 1.23236 1.02126 0.97335 0.93386 1.23385 0.89858 1.04813 1.04220 0.83435 1.19074 0.89327 0.73038 0.74752 1.93228 1.91719 1.93084 1.36576 1.93137 1.87012 1.47009 1.90579 1.93203 1.91994 1.59255 1.70540 0.86595 0.87446 0.90105 0.88380 0.93638 0.95353 0.92498 0.86217 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.00 18.54 42.15 0.78 -5.22 16 2 C 0.22 2.31 15.43 -20.76 -0.32 1.99 16 3 C -0.05 -0.46 5.91 -29.52 -0.17 -0.64 16 4 C 0.12 1.39 4.99 -4.04 -0.02 1.37 16 5 N -0.58 -9.87 2.46 -175.05 -0.43 -10.30 16 6 C 0.22 4.64 4.23 -5.19 -0.02 4.62 16 7 C -0.53 -14.16 9.94 -34.44 -0.34 -14.50 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 11 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 15 C 0.53 9.04 7.28 -10.98 -0.08 8.96 16 16 O -0.51 -11.04 10.48 5.56 0.06 -10.98 16 17 C -0.16 -1.85 4.79 -91.77 -0.44 -2.29 16 18 H 0.14 1.03 6.47 -51.93 -0.34 0.70 16 19 C -0.12 -1.26 9.64 -26.69 -0.26 -1.52 16 20 C -0.20 -2.23 5.89 -90.59 -0.53 -2.77 16 21 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 22 C 0.49 7.48 2.81 37.16 0.10 7.58 16 23 F -0.16 -3.04 13.54 2.25 0.03 -3.01 16 24 F -0.20 -2.76 17.32 2.25 0.04 -2.72 16 25 F -0.17 -2.94 14.91 2.25 0.03 -2.90 16 26 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.11 0.72 7.44 -51.93 -0.39 0.33 16 28 H 0.08 0.79 6.64 -51.93 -0.35 0.44 16 29 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.05 1.08 6.47 -51.93 -0.34 0.74 16 31 H 0.03 0.56 7.50 -51.93 -0.39 0.17 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 33 H 0.12 1.52 7.22 -51.93 -0.38 1.14 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -34.30 306.44 -4.39 -38.70 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.44 Total: -2.85 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -2.18 Total: 4.77 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 1.13 Total: -41.44 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.10 Total: -8.64 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.30 -4.39 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182323400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.713 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds