Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47000 * 108.80268 * 3 2 1 5 5 N 1.46499 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 3 7 7 C 1.50703 * 109.46877 * 90.00092 * 6 5 4 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00254 * 180.02562 * 9 7 6 11 11 Si 1.86811 * 119.99850 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46778 * 89.99559 * 11 9 7 13 13 H 1.48493 * 109.46886 * 209.99446 * 11 9 7 14 14 H 1.48492 * 109.47026 * 329.99859 * 11 9 7 15 15 C 1.34773 * 120.00036 * 270.27655 * 5 4 3 16 16 O 1.21281 * 120.00220 * 179.72597 * 15 5 4 17 17 C 1.50706 * 120.00080 * 359.72107 * 15 5 4 18 18 H 1.09001 * 115.54694 * 34.41723 * 17 15 5 19 19 C 1.52998 * 117.49994 * 248.75418 * 17 15 5 20 20 C 1.52993 * 117.50167 * 180.09051 * 17 15 5 21 21 H 1.09001 * 117.49986 * 214.97880 * 20 17 15 22 22 C 1.53000 * 117.49682 * 359.97438 * 20 17 15 23 23 F 1.39901 * 109.47255 * 60.00037 * 22 20 17 24 24 F 1.39905 * 109.46912 * 180.02562 * 22 20 17 25 25 F 1.39896 * 109.47414 * 300.00264 * 22 20 17 26 26 H 1.09003 * 109.47447 * 348.79961 * 3 2 1 27 27 H 1.08997 * 109.47023 * 228.80317 * 3 2 1 28 28 H 1.08994 * 109.47531 * 59.99578 * 4 3 2 29 29 H 1.09005 * 109.46544 * 299.99513 * 4 3 2 30 30 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 31 31 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 32 32 H 0.97008 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.09003 * 117.49928 * 359.97438 * 19 17 15 34 34 H 1.09001 * 117.50229 * 144.99284 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4658 -1.3655 5 7 4.5827 0.4671 -1.3654 6 6 5.3163 -0.7335 -1.7740 7 6 5.5676 -0.6874 -3.2592 8 1 5.2164 0.1524 -3.8405 9 6 6.2468 -1.7167 -3.8757 10 7 6.4665 -1.6763 -5.1717 11 14 6.8549 -3.1689 -2.8701 12 1 5.8042 -4.2176 -2.8298 13 1 8.0835 -3.7228 -3.4935 14 1 7.1600 -2.7205 -1.4878 15 6 5.2556 1.5708 -0.9839 16 8 6.4684 1.5702 -0.9790 17 6 4.5010 2.8057 -0.5636 18 1 3.5612 2.6272 -0.0412 19 6 4.5781 4.0273 -1.4815 20 6 5.3220 4.0265 -0.1436 21 1 4.9221 4.6515 0.6549 22 6 6.8462 3.9000 -0.1820 23 9 7.2574 3.6092 -1.4872 24 9 7.4247 5.1046 0.2323 25 9 7.2504 2.8703 0.6744 26 1 2.9718 -1.0073 0.1996 27 1 2.9710 0.6777 0.7733 28 1 2.7540 1.4737 -1.5652 29 1 2.7547 -0.2114 -2.1387 30 1 6.2687 -0.7747 -1.2455 31 1 4.7280 -1.6186 -1.5323 32 1 6.9440 -2.4007 -5.6055 33 1 5.1749 3.9380 -2.3892 34 1 3.6890 4.6526 -1.5629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182323400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = -149.294582 kcal Electronic energy + Delta-G solvation = -23863.402027 eV Core-core repulsion = 19767.967900 eV Total energy + Delta-G solvation = -4095.434127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.77801 -48.37452 -48.21400 -41.07944 -38.16134 -37.54792 -36.58966 -34.76262 -32.31529 -30.08175 -27.90890 -25.84796 -25.17861 -23.28622 -22.46957 -20.10426 -19.55153 -19.14504 -18.99229 -18.51517 -18.16731 -17.67489 -16.68214 -16.26698 -15.84660 -15.69132 -15.50954 -15.15901 -15.05851 -14.86054 -14.71253 -14.53485 -14.45524 -14.34453 -14.08650 -13.70884 -13.51797 -13.43269 -13.18921 -12.95815 -12.67306 -12.49805 -12.38320 -12.02988 -11.84375 -11.76772 -11.71037 -11.59529 -10.75859 -10.59505 -9.42507 -8.27720 -6.31662 1.36421 1.41698 1.51063 1.53360 1.78093 1.89512 1.98088 2.15560 2.36313 2.56162 3.02380 3.08829 3.18125 3.22743 3.48759 3.68611 3.83024 3.93786 4.11000 4.15401 4.27945 4.60778 4.66576 4.80677 4.84070 4.89537 5.00361 5.05641 5.16212 5.53999 5.65148 6.29398 6.64691 6.69612 6.72477 7.28293 7.45098 8.89193 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.007054 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.796690 B = 3968.587062 C = 5744.263997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.224 3.776 7 C -0.530 4.530 8 H 0.031 0.969 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.942 3.058 12 H -0.252 1.252 13 H -0.292 1.292 14 H -0.249 1.249 15 C 0.515 3.485 16 O -0.567 6.567 17 C -0.161 4.161 18 H 0.189 0.811 19 C -0.114 4.114 20 C -0.193 4.193 21 H 0.196 0.804 22 C 0.475 3.525 23 F -0.193 7.193 24 F -0.193 7.193 25 F -0.186 7.186 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.265 0.735 33 H 0.085 0.915 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 10.608 14.426 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.049 0.951 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.765 3.235 12 H -0.176 1.176 13 H -0.218 1.218 14 H -0.172 1.172 15 C 0.304 3.696 16 O -0.446 6.446 17 C -0.181 4.181 18 H 0.206 0.794 19 C -0.151 4.151 20 C -0.212 4.212 21 H 0.213 0.787 22 C 0.422 3.578 23 F -0.175 7.175 24 F -0.174 7.174 25 F -0.168 7.168 26 H 0.143 0.857 27 H 0.160 0.840 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.366 10.478 14.278 19.587 hybrid contribution 1.589 -0.947 -0.506 1.918 sum -6.777 9.531 13.771 18.067 Atomic orbital electron populations 1.81279 1.14597 1.10930 1.10174 1.29165 0.94954 0.91389 0.91616 1.19889 0.79940 1.07744 1.00403 1.21575 0.78568 1.04790 0.96405 1.47655 1.06872 1.13049 1.64242 1.19378 0.93051 0.84453 0.92943 1.21617 1.36080 1.05702 0.93467 0.95110 1.25835 0.95589 1.01681 0.95815 1.70062 1.43091 1.34484 1.11352 0.85791 0.78527 0.79337 0.79806 1.17574 1.21777 1.17217 1.20322 0.87398 0.84763 0.77135 1.90785 1.15910 1.83193 1.54745 1.22622 1.02366 0.86818 1.06295 0.79431 1.23406 1.03103 0.96951 0.91687 1.23588 0.86247 1.05166 1.06191 0.78725 1.19864 0.92071 0.72604 0.73304 1.93170 1.92334 1.93347 1.38638 1.93134 1.87394 1.46514 1.90386 1.93158 1.92488 1.60244 1.70878 0.85667 0.83963 0.87267 0.89973 0.95792 0.92427 0.92603 0.89677 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.11 18.54 20.01 0.37 -11.74 16 2 C 0.25 4.39 15.43 89.44 1.38 5.77 16 3 C -0.04 -0.51 5.91 28.79 0.17 -0.34 16 4 C 0.11 2.30 4.99 86.38 0.43 2.74 16 5 N -0.59 -18.99 2.46 -826.13 -2.03 -21.02 16 6 C 0.22 9.52 4.23 85.63 0.36 9.88 16 7 C -0.53 -29.10 9.94 25.60 0.25 -28.84 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.01 0.47 5.47 84.65 0.46 0.93 16 10 N -0.95 -58.93 13.96 21.44 0.30 -58.63 16 11 Si 0.94 42.55 27.47 68.60 1.88 44.44 16 12 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 15 C 0.52 16.96 7.28 87.66 0.64 17.60 16 16 O -0.57 -24.91 10.48 -3.03 -0.03 -24.95 16 17 C -0.16 -3.03 4.79 -11.54 -0.06 -3.09 16 18 H 0.19 1.55 6.47 -2.39 -0.02 1.53 16 19 C -0.11 -1.94 9.64 30.62 0.30 -1.65 16 20 C -0.19 -3.55 5.89 -10.77 -0.06 -3.61 16 21 H 0.20 1.74 8.14 -2.39 -0.02 1.72 16 22 C 0.48 14.13 2.81 71.98 0.20 14.34 16 23 F -0.19 -7.41 13.54 44.97 0.61 -6.80 16 24 F -0.19 -5.26 17.32 44.97 0.78 -4.49 16 25 F -0.19 -6.49 14.91 44.97 0.67 -5.82 16 26 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.14 1.02 7.44 -2.39 -0.02 1.00 16 28 H 0.11 1.66 6.64 -2.39 -0.02 1.64 16 29 H 0.08 2.00 8.07 -2.38 -0.02 1.98 16 30 H 0.02 1.14 6.47 -2.39 -0.02 1.12 16 31 H 0.06 2.13 7.50 -2.39 -0.02 2.11 16 32 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 33 H 0.08 2.11 7.22 -2.39 -0.02 2.09 16 34 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -82.80 306.44 7.72 -75.07 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.09 Total: 0.21 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 4.08 Total: 13.72 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.36 Total: -91.40 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.03 Total: -24.95 kcal Atomic # 9 Polarization: -19.16 SS G_CDS: 2.06 Total: -17.10 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Total: -82.80 7.72 -75.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182323400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.222 kcal (2) G-P(sol) polarization free energy of solvation -82.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds