Wall clock time and date at job start Tue Mar 31 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47457 * 245.72010 * 3 2 1 5 5 N 1.46499 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00149 * 269.99407 * 5 4 3 7 7 C 1.50703 * 109.47531 * 270.00921 * 6 5 4 8 8 H 1.07994 * 119.99492 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00154 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99977 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00116 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47015 * 60.00046 * 11 9 7 13 13 H 1.48496 * 109.46983 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47056 * 299.99963 * 11 9 7 15 15 C 1.34778 * 119.99768 * 90.00285 * 5 4 3 16 16 O 1.21282 * 119.99686 * 179.97438 * 15 5 4 17 17 C 1.50692 * 120.00351 * 359.97438 * 15 5 4 18 18 H 1.09008 * 115.54779 * 325.66812 * 17 15 5 19 19 C 1.53069 * 117.53537 * 111.38291 * 17 15 5 20 20 C 1.53000 * 117.50104 * 180.02562 * 17 15 5 21 21 H 1.09002 * 117.49833 * 359.97323 * 20 17 15 22 22 C 1.52996 * 117.50107 * 144.97269 * 20 17 15 23 23 F 1.39898 * 109.47275 * 59.91071 * 22 20 17 24 24 F 1.39894 * 109.47378 * 179.91200 * 22 20 17 25 25 F 1.39903 * 109.47222 * 299.91189 * 22 20 17 26 26 H 1.09007 * 109.47090 * 125.71644 * 3 2 1 27 27 H 1.09005 * 109.47521 * 5.72013 * 3 2 1 28 28 H 1.08998 * 109.46713 * 59.99911 * 4 3 2 29 29 H 1.08993 * 109.46734 * 300.00086 * 4 3 2 30 30 H 1.09003 * 109.47161 * 30.00465 * 6 5 4 31 31 H 1.08995 * 109.47528 * 150.00055 * 6 5 4 32 32 H 0.97004 * 120.00390 * 180.02562 * 10 9 7 33 33 H 1.09000 * 117.51640 * 359.97438 * 19 17 15 34 34 H 1.08999 * 117.49573 * 214.95399 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5940 1.3149 5 7 4.5828 0.5952 1.3145 6 6 5.3164 -0.5607 1.8359 7 6 5.5676 -0.3731 3.3100 8 1 5.2164 0.5183 3.8084 9 6 6.2459 -1.3393 4.0222 10 7 6.6740 -2.4246 3.4151 11 14 6.5580 -1.1064 5.8492 12 1 5.2607 -0.9806 6.5608 13 1 7.3015 -2.2782 6.3776 14 1 7.3604 0.1250 6.0612 15 6 5.2557 1.6598 0.8346 16 8 6.4685 1.6610 0.8347 17 6 4.5012 2.8487 0.2979 18 1 3.5630 2.6207 -0.2083 19 6 4.5746 4.1527 1.0962 20 6 5.3222 4.0255 -0.2332 21 1 6.4081 3.9399 -0.1940 22 6 4.7636 4.7919 -1.4338 23 9 3.5148 5.3293 -1.1040 24 9 5.6409 5.8264 -1.7759 25 9 4.6242 3.9205 -2.5195 26 1 2.9711 0.6008 -0.8344 27 1 2.9719 -1.0217 -0.1024 28 1 2.7547 -0.0061 2.1492 29 1 2.7540 1.6163 1.4173 30 1 4.7280 -1.4649 1.6800 31 1 6.2687 -0.6524 1.3138 32 1 7.1509 -3.1046 3.9162 33 1 5.1685 4.1508 2.0102 34 1 3.6849 4.7820 1.1150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182323410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:08 Heat of formation + Delta-G solvation = -139.642476 kcal Electronic energy + Delta-G solvation = -23112.870148 eV Core-core repulsion = 19017.854568 eV Total energy + Delta-G solvation = -4095.015580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -50.20740 -47.75176 -47.67464 -39.83297 -37.12774 -36.51198 -35.27314 -32.91916 -30.92278 -28.11754 -26.93984 -24.58165 -23.98964 -22.23156 -21.63816 -19.09686 -18.51977 -18.23213 -17.94280 -17.56818 -16.54079 -16.39314 -15.80724 -14.79471 -14.70810 -14.57794 -14.54226 -14.30849 -14.13523 -13.94402 -13.85913 -13.78862 -13.65951 -13.08345 -12.75974 -12.47206 -12.34641 -12.07278 -11.81678 -11.80234 -11.37911 -11.07494 -11.00552 -10.97138 -10.76371 -10.63017 -10.25998 -9.80432 -9.24788 -8.52809 -7.97296 -6.14683 -4.19983 2.52440 2.62361 2.77816 2.78783 3.24969 3.26554 3.31651 3.35738 3.48900 3.72673 3.87072 4.18517 4.25503 4.36748 4.48613 4.65827 4.85028 4.90838 5.04156 5.12856 5.20780 5.39762 5.42850 5.69349 5.73954 5.77573 6.02447 6.82647 7.25407 7.32551 7.54790 7.80392 8.08947 8.11966 8.69633 8.86645 9.45795 10.93439 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.004945 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.970716 B = 5660.933437 C = 6921.421782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.588 5.588 6 C 0.245 3.755 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.538 3.462 16 O -0.527 6.527 17 C -0.160 4.160 18 H 0.130 0.870 19 C -0.121 4.121 20 C -0.203 4.203 21 H 0.160 0.840 22 C 0.485 3.515 23 F -0.183 7.183 24 F -0.179 7.179 25 F -0.179 7.179 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.121 0.879 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 11.532 -7.942 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.010 4.010 5 N -0.319 5.319 6 C 0.126 3.874 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.323 3.677 16 O -0.403 6.403 17 C -0.181 4.181 18 H 0.148 0.852 19 C -0.158 4.158 20 C -0.223 4.223 21 H 0.177 0.823 22 C 0.431 3.569 23 F -0.165 7.165 24 F -0.160 7.160 25 F -0.160 7.160 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.562 11.327 -7.927 15.304 hybrid contribution 0.504 0.092 0.719 0.883 sum -6.058 11.419 -7.208 14.801 Atomic orbital electron populations 1.81216 1.13016 1.09188 1.08675 1.29070 0.95069 0.92923 0.93100 1.19919 0.81454 1.06244 1.01764 1.21349 0.81956 1.01925 0.95773 1.48100 1.05042 1.18813 1.59922 1.19407 0.92632 0.81101 0.94250 1.21352 1.37046 1.05081 0.93564 0.92350 1.24911 0.95213 0.95025 0.98737 1.69905 1.38003 1.08737 1.36474 0.86566 0.78417 0.77722 0.84778 1.20207 1.21164 1.20176 1.19121 0.87323 0.82769 0.78442 1.90714 1.13446 1.80159 1.56031 1.22551 1.00959 0.90223 1.04407 0.85222 1.23226 1.02159 0.96508 0.93890 1.23420 1.03005 1.02463 0.93401 0.82251 1.19544 0.75409 0.77741 0.84171 1.93159 1.43793 1.87115 1.92394 1.93187 1.69126 1.60485 1.93208 1.93206 1.95674 1.69332 1.57796 0.87534 0.86350 0.88502 0.90382 0.94464 0.93434 0.92526 0.86069 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.42 18.54 42.16 0.78 -5.63 16 2 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 3 C -0.05 -0.52 5.91 -29.52 -0.17 -0.70 16 4 C 0.12 1.45 5.00 -4.04 -0.02 1.43 16 5 N -0.59 -10.15 2.46 -175.07 -0.43 -10.58 16 6 C 0.24 5.55 5.16 -5.20 -0.03 5.52 16 7 C -0.53 -13.66 9.39 -34.44 -0.32 -13.99 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 11 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.54 9.25 7.46 -10.99 -0.08 9.17 16 16 O -0.53 -11.46 15.84 5.56 0.09 -11.37 16 17 C -0.16 -1.93 4.44 -91.74 -0.41 -2.34 16 18 H 0.13 1.25 6.48 -51.92 -0.34 0.91 16 19 C -0.12 -1.24 9.63 -26.67 -0.26 -1.50 16 20 C -0.20 -2.33 5.40 -90.60 -0.49 -2.82 16 21 H 0.16 1.99 7.67 -51.93 -0.40 1.59 16 22 C 0.49 5.34 3.36 37.16 0.12 5.47 16 23 F -0.18 -1.94 15.89 2.25 0.04 -1.90 16 24 F -0.18 -2.05 17.32 2.25 0.04 -2.01 16 25 F -0.18 -2.12 17.27 2.25 0.04 -2.08 16 26 H 0.11 0.88 7.45 -51.93 -0.39 0.49 16 27 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.08 0.80 6.64 -51.93 -0.34 0.46 16 30 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.12 0.97 7.22 -51.93 -0.37 0.59 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -31.05 319.54 -4.45 -35.50 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.46 Total: -2.29 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.07 Total: 4.08 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 1.09 Total: -40.34 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.05 -4.45 -35.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182323410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.145 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds