Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47457 * 245.72010 * 3 2 1 5 5 N 1.46499 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00149 * 269.99407 * 5 4 3 7 7 C 1.50703 * 109.47531 * 270.00921 * 6 5 4 8 8 H 1.07994 * 119.99492 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00154 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99977 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00116 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47015 * 60.00046 * 11 9 7 13 13 H 1.48496 * 109.46983 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47056 * 299.99963 * 11 9 7 15 15 C 1.34778 * 119.99768 * 90.00285 * 5 4 3 16 16 O 1.21282 * 119.99686 * 179.97438 * 15 5 4 17 17 C 1.50692 * 120.00351 * 359.97438 * 15 5 4 18 18 H 1.09008 * 115.54779 * 325.66812 * 17 15 5 19 19 C 1.53069 * 117.53537 * 111.38291 * 17 15 5 20 20 C 1.53000 * 117.50104 * 180.02562 * 17 15 5 21 21 H 1.09002 * 117.49833 * 359.97323 * 20 17 15 22 22 C 1.52996 * 117.50107 * 144.97269 * 20 17 15 23 23 F 1.39898 * 109.47275 * 59.91071 * 22 20 17 24 24 F 1.39894 * 109.47378 * 179.91200 * 22 20 17 25 25 F 1.39903 * 109.47222 * 299.91189 * 22 20 17 26 26 H 1.09007 * 109.47090 * 125.71644 * 3 2 1 27 27 H 1.09005 * 109.47521 * 5.72013 * 3 2 1 28 28 H 1.08998 * 109.46713 * 59.99911 * 4 3 2 29 29 H 1.08993 * 109.46734 * 300.00086 * 4 3 2 30 30 H 1.09003 * 109.47161 * 30.00465 * 6 5 4 31 31 H 1.08995 * 109.47528 * 150.00055 * 6 5 4 32 32 H 0.97004 * 120.00390 * 180.02562 * 10 9 7 33 33 H 1.09000 * 117.51640 * 359.97438 * 19 17 15 34 34 H 1.08999 * 117.49573 * 214.95399 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5940 1.3149 5 7 4.5828 0.5952 1.3145 6 6 5.3164 -0.5607 1.8359 7 6 5.5676 -0.3731 3.3100 8 1 5.2164 0.5183 3.8084 9 6 6.2459 -1.3393 4.0222 10 7 6.6740 -2.4246 3.4151 11 14 6.5580 -1.1064 5.8492 12 1 5.2607 -0.9806 6.5608 13 1 7.3015 -2.2782 6.3776 14 1 7.3604 0.1250 6.0612 15 6 5.2557 1.6598 0.8346 16 8 6.4685 1.6610 0.8347 17 6 4.5012 2.8487 0.2979 18 1 3.5630 2.6207 -0.2083 19 6 4.5746 4.1527 1.0962 20 6 5.3222 4.0255 -0.2332 21 1 6.4081 3.9399 -0.1940 22 6 4.7636 4.7919 -1.4338 23 9 3.5148 5.3293 -1.1040 24 9 5.6409 5.8264 -1.7759 25 9 4.6242 3.9205 -2.5195 26 1 2.9711 0.6008 -0.8344 27 1 2.9719 -1.0217 -0.1024 28 1 2.7547 -0.0061 2.1492 29 1 2.7540 1.6163 1.4173 30 1 4.7280 -1.4649 1.6800 31 1 6.2687 -0.6524 1.3138 32 1 7.1509 -3.1046 3.9162 33 1 5.1685 4.1508 2.0102 34 1 3.6849 4.7820 1.1150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182323410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -157.547092 kcal Electronic energy + Delta-G solvation = -23113.646551 eV Core-core repulsion = 19017.854568 eV Total energy + Delta-G solvation = -4095.791982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = -2.33 seconds Orbital eigenvalues (eV) -51.07744 -48.60569 -48.56243 -41.11666 -38.18787 -37.61552 -36.62446 -34.81189 -32.17707 -29.66774 -28.06864 -25.90279 -25.31221 -23.51768 -22.63532 -20.18840 -19.46293 -19.25370 -18.87008 -18.71415 -18.30553 -17.56174 -17.18029 -16.36157 -15.84083 -15.70851 -15.50826 -15.44495 -15.00535 -14.99725 -14.83202 -14.73269 -14.69622 -14.34419 -14.07740 -13.76864 -13.53611 -13.35768 -13.19124 -12.92720 -12.72000 -12.66555 -12.51824 -12.16246 -11.92176 -11.89285 -11.75521 -11.64164 -10.67679 -10.56588 -9.51120 -8.16547 -6.28756 1.42483 1.44772 1.46289 1.51837 1.65997 1.77404 1.85032 2.10869 2.43810 2.45741 2.78209 2.97334 3.14084 3.18014 3.33456 3.54241 3.73935 3.81571 4.03093 4.12340 4.14713 4.55161 4.59889 4.81469 4.83723 4.90987 5.07702 5.12352 5.34758 5.60818 5.86812 6.13173 6.61037 6.69854 6.81496 7.31896 7.46819 8.90162 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.004945 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.970716 B = 5660.933437 C = 6921.421782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.041 4.041 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.258 3.742 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.278 1.278 15 C 0.533 3.467 16 O -0.583 6.583 17 C -0.160 4.160 18 H 0.164 0.836 19 C -0.101 4.101 20 C -0.206 4.206 21 H 0.144 0.856 22 C 0.494 3.506 23 F -0.176 7.176 24 F -0.182 7.182 25 F -0.183 7.183 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.037 0.963 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 13.069 -7.815 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.082 4.082 4 C -0.012 4.012 5 N -0.318 5.318 6 C 0.138 3.862 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.188 1.188 13 H -0.210 1.210 14 H -0.204 1.204 15 C 0.322 3.678 16 O -0.464 6.464 17 C -0.181 4.181 18 H 0.181 0.819 19 C -0.138 4.138 20 C -0.225 4.225 21 H 0.162 0.838 22 C 0.440 3.560 23 F -0.157 7.157 24 F -0.163 7.163 25 F -0.165 7.165 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.176 12.882 -7.806 17.139 hybrid contribution 1.023 -0.371 0.654 1.269 sum -7.153 12.512 -7.153 16.090 Atomic orbital electron populations 1.81261 1.14372 1.10780 1.10164 1.29111 0.94899 0.91480 0.91679 1.19868 0.80205 1.06882 1.01261 1.21573 0.78823 1.04015 0.96834 1.47954 1.06906 1.17493 1.59494 1.18862 0.91521 0.83283 0.92580 1.21717 1.36404 1.04671 0.95076 0.92473 1.25716 0.95240 0.94920 1.02876 1.70017 1.39044 1.09583 1.37982 0.85620 0.78675 0.77331 0.80106 1.18757 1.21017 1.20381 1.19917 0.86942 0.83624 0.77363 1.90689 1.16166 1.81308 1.58197 1.22446 1.01511 0.88418 1.05729 0.81881 1.23392 1.02721 0.94833 0.92851 1.23333 1.02372 1.02299 0.94537 0.83811 1.19341 0.75493 0.77480 0.83661 1.93174 1.43240 1.86983 1.92296 1.93184 1.69359 1.60595 1.93196 1.93201 1.95700 1.69516 1.58043 0.84799 0.86055 0.89423 0.87196 0.94540 0.97673 0.92601 0.86791 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.18 18.54 20.00 0.37 -12.81 16 2 C 0.25 5.14 15.43 89.44 1.38 6.53 16 3 C -0.04 -0.71 5.91 28.79 0.17 -0.54 16 4 C 0.11 2.53 5.00 86.38 0.43 2.97 16 5 N -0.59 -19.90 2.46 -826.18 -2.03 -21.93 16 6 C 0.26 11.98 5.16 85.63 0.44 12.43 16 7 C -0.54 -28.02 9.39 25.60 0.24 -27.78 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.01 0.63 5.46 84.65 0.46 1.09 16 10 N -0.93 -52.63 13.29 21.45 0.28 -52.34 16 11 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 C 0.53 17.97 7.46 87.65 0.65 18.62 16 16 O -0.58 -26.04 15.84 -3.04 -0.05 -26.08 16 17 C -0.16 -3.44 4.44 -11.52 -0.05 -3.49 16 18 H 0.16 2.38 6.48 -2.38 -0.02 2.37 16 19 C -0.10 -1.76 9.63 30.63 0.30 -1.47 16 20 C -0.21 -4.30 5.40 -10.78 -0.06 -4.35 16 21 H 0.14 3.54 7.67 -2.39 -0.02 3.52 16 22 C 0.49 9.62 3.36 71.98 0.24 9.86 16 23 F -0.18 -3.06 15.89 44.97 0.71 -2.35 16 24 F -0.18 -3.84 17.32 44.97 0.78 -3.06 16 25 F -0.18 -3.91 17.27 44.97 0.78 -3.14 16 26 H 0.13 1.67 7.45 -2.38 -0.02 1.66 16 27 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.11 1.82 6.64 -2.39 -0.02 1.81 16 30 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.01 0.28 7.42 -2.39 -0.02 0.26 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.15 1.73 7.22 -2.39 -0.02 1.71 16 Total: -1.00 -69.33 319.54 8.23 -61.10 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.15 Total: 2.38 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 4.21 Total: 13.86 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -1.37 Total: -87.08 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 2.27 Total: -8.54 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.33 8.23 -61.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182323410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.443 kcal (2) G-P(sol) polarization free energy of solvation -69.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.33 seconds