Wall clock time and date at job start Tue Mar 31 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46776 * 150.72352 * 3 2 1 5 5 N 1.46497 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00158 * 270.00237 * 5 4 3 7 7 C 1.50704 * 109.46988 * 269.99570 * 6 5 4 8 8 H 1.08005 * 119.99704 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00327 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99722 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00094 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47088 * 60.00373 * 11 9 7 13 13 H 1.48500 * 109.47328 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47301 * 300.00388 * 11 9 7 15 15 C 1.34784 * 120.00103 * 89.99832 * 5 4 3 16 16 O 1.21273 * 119.99905 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99807 * 0.02562 * 15 5 4 18 18 H 1.08995 * 115.56303 * 34.30886 * 17 15 5 19 19 C 1.53004 * 117.49582 * 248.62333 * 17 15 5 20 20 C 1.52997 * 117.49872 * 180.02562 * 17 15 5 21 21 H 1.09005 * 117.49905 * 359.97288 * 20 17 15 22 22 C 1.52997 * 117.49949 * 214.97862 * 20 17 15 23 23 F 1.39905 * 109.47157 * 59.99639 * 22 20 17 24 24 F 1.39900 * 109.47010 * 300.00030 * 22 20 17 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 20 17 26 26 H 1.08996 * 109.47193 * 30.72424 * 3 2 1 27 27 H 1.08997 * 109.47165 * 270.72068 * 3 2 1 28 28 H 1.08996 * 109.47201 * 60.00077 * 4 3 2 29 29 H 1.09005 * 109.47052 * 299.99501 * 4 3 2 30 30 H 1.08996 * 109.47633 * 29.99305 * 6 5 4 31 31 H 1.09006 * 109.47495 * 150.00191 * 6 5 4 32 32 H 0.96999 * 119.99997 * 179.97438 * 10 9 7 33 33 H 1.08997 * 117.49770 * 145.02011 * 19 17 15 34 34 H 1.08999 * 117.49991 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2592 -0.7054 5 7 4.5823 1.2602 -0.7049 6 6 5.3140 1.8812 0.4019 7 6 5.5644 3.3334 0.0864 8 1 5.2132 3.7519 -0.8453 9 6 6.2409 4.1281 0.9875 10 7 6.6682 3.6185 2.1222 11 14 6.5506 5.9282 0.5967 12 1 5.2524 6.6243 0.4086 13 1 7.2924 6.5578 1.7185 14 1 7.3536 6.0335 -0.6481 15 6 5.2570 0.6896 -1.7227 16 8 6.4698 0.6901 -1.7221 17 6 4.5043 0.0512 -2.8616 18 1 3.5658 0.5337 -3.1341 19 6 4.5801 -1.4713 -2.9929 20 6 5.3272 -0.5800 -3.9864 21 1 6.4130 -0.5331 -3.9030 22 6 4.7700 -0.4852 -5.4082 23 9 4.6275 0.8602 -5.7645 24 9 3.5229 -1.1167 -5.4633 25 9 5.6502 -1.1118 -6.2968 26 1 2.9717 -0.8826 -0.5250 27 1 2.9714 -0.0121 1.0275 28 1 2.7536 2.1424 -0.1804 29 1 2.7540 1.2719 -1.7331 30 1 4.7247 1.8043 1.3156 31 1 6.2668 1.3699 0.5399 32 1 7.1444 4.1774 2.7559 33 1 3.6915 -1.9903 -3.3520 34 1 5.1747 -2.0111 -2.2559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182323411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:10 Heat of formation + Delta-G solvation = -156.851428 kcal Electronic energy + Delta-G solvation = -23109.469512 eV Core-core repulsion = 19013.707696 eV Total energy + Delta-G solvation = -4095.761816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -51.08550 -48.61042 -48.57995 -41.11187 -38.16066 -37.60610 -36.61522 -34.81728 -32.14836 -29.67538 -28.07155 -25.89366 -25.29167 -23.54983 -22.62633 -20.11388 -19.49973 -19.24258 -18.92230 -18.67612 -18.31824 -17.53661 -17.18562 -16.36845 -15.90422 -15.66572 -15.52294 -15.45573 -15.01751 -14.98113 -14.79273 -14.74119 -14.51835 -14.49406 -14.08221 -13.71442 -13.52685 -13.35155 -13.23386 -12.92781 -12.69307 -12.65421 -12.52993 -12.18299 -12.05077 -11.75930 -11.70352 -11.63381 -10.65388 -10.57746 -9.50724 -8.18117 -6.29928 1.40442 1.43021 1.47232 1.51776 1.65443 1.78250 1.88550 2.21350 2.37096 2.47073 2.80054 2.97772 3.12219 3.16447 3.34653 3.55257 3.73755 3.85742 3.99410 4.16032 4.20604 4.53764 4.67072 4.84088 4.87802 4.95075 5.09552 5.12804 5.34427 5.59809 5.86363 6.12637 6.64094 6.70540 6.80444 7.31757 7.46679 8.88339 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.005242 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.657803 B = 5340.216781 C = 6755.505066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.111 3.889 5 N -0.589 5.589 6 C 0.259 3.741 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.954 3.046 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.280 1.280 15 C 0.533 3.467 16 O -0.584 6.584 17 C -0.165 4.165 18 H 0.156 0.844 19 C -0.088 4.088 20 C -0.213 4.213 21 H 0.143 0.857 22 C 0.492 3.508 23 F -0.189 7.189 24 F -0.174 7.174 25 F -0.182 7.182 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.151 0.849 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -11.502 -10.865 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.078 4.078 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.138 3.862 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.780 3.220 12 H -0.189 1.189 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.322 3.678 16 O -0.464 6.464 17 C -0.186 4.186 18 H 0.173 0.827 19 C -0.125 4.125 20 C -0.232 4.232 21 H 0.161 0.839 22 C 0.438 3.562 23 F -0.170 7.170 24 F -0.156 7.156 25 F -0.163 7.163 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.047 -11.432 -10.699 17.605 hybrid contribution 0.992 1.419 -0.136 1.737 sum -7.055 -10.013 -10.836 16.354 Atomic orbital electron populations 1.81258 1.14491 1.10313 1.10818 1.29161 0.94953 0.91577 0.91410 1.19834 0.80012 1.01725 1.06185 1.21569 0.78889 0.97820 1.03044 1.47962 1.06874 1.54785 1.22199 1.18855 0.91669 0.91130 0.84496 1.21735 1.36587 0.96187 1.03684 0.92937 1.25673 0.95222 1.02759 0.94896 1.70002 1.39010 1.37804 1.09544 0.85667 0.78664 0.80192 0.77499 1.18883 1.20685 1.20624 1.19902 0.86913 0.78068 0.82936 1.90686 1.16143 1.60785 1.78806 1.22411 1.01345 0.99797 0.95019 0.82659 1.23464 1.02566 0.88987 0.97500 1.23342 1.02425 1.11335 0.86124 0.83874 1.19437 0.75554 0.73178 0.88071 1.93202 1.95696 1.34801 1.93327 1.93170 1.43335 1.82207 1.96877 1.93181 1.69158 1.82573 1.71408 0.84130 0.86075 0.89817 0.87701 0.94354 0.97393 0.92531 0.83074 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.02 18.54 20.01 0.37 -12.65 16 2 C 0.25 4.97 15.43 89.45 1.38 6.35 16 3 C -0.04 -0.59 6.03 28.79 0.17 -0.41 16 4 C 0.11 2.53 5.19 86.38 0.45 2.98 16 5 N -0.59 -19.89 2.46 -826.16 -2.03 -21.92 16 6 C 0.26 12.02 5.16 85.64 0.44 12.46 16 7 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.01 0.76 5.46 84.66 0.46 1.22 16 10 N -0.92 -52.55 13.29 21.45 0.28 -52.26 16 11 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 C 0.53 17.93 7.46 87.66 0.65 18.58 16 16 O -0.58 -25.99 15.84 -3.01 -0.05 -26.04 16 17 C -0.16 -3.52 4.94 -11.54 -0.06 -3.58 16 18 H 0.16 2.59 6.44 -2.39 -0.02 2.58 16 19 C -0.09 -1.25 9.62 30.58 0.29 -0.95 16 20 C -0.21 -4.41 5.40 -10.81 -0.06 -4.47 16 21 H 0.14 3.52 7.67 -2.38 -0.02 3.50 16 22 C 0.49 10.07 3.36 71.98 0.24 10.32 16 23 F -0.19 -4.60 17.27 44.97 0.78 -3.82 16 24 F -0.17 -3.10 15.89 44.97 0.71 -2.38 16 25 F -0.18 -3.95 17.32 44.97 0.78 -3.18 16 26 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 29 H 0.10 1.82 6.00 -2.38 -0.01 1.80 16 30 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 31 H 0.01 0.43 7.42 -2.38 -0.02 0.41 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.61 16 33 H 0.15 1.24 7.22 -2.39 -0.02 1.22 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.97 320.32 8.24 -62.72 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: 1.15 Total: 0.36 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 4.22 Total: 14.02 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -1.37 Total: -86.83 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 2.27 Total: -9.38 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.97 8.24 -62.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182323411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.130 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds