Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00256 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00291 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46676 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37874 * 126.23316 * 179.71495 * 15 13 12 17 17 C 1.39830 * 107.08857 * 179.85057 * 16 15 13 18 18 C 1.50697 * 126.06969 * 180.13658 * 17 16 15 19 19 F 1.39907 * 109.47339 * 180.30010 * 18 17 16 20 20 F 1.39899 * 109.47343 * 300.30647 * 18 17 16 21 21 F 1.39902 * 109.46821 * 60.30557 * 18 17 16 22 22 C 1.35458 * 107.86266 * 0.41920 * 17 16 15 23 23 N 1.35528 * 108.87041 * 359.73859 * 22 17 16 24 24 H 0.97004 * 125.67702 * 180.02562 * 23 22 17 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.45318 * 359.96338 * 16 15 13 34 34 H 1.07999 * 125.56219 * 179.78212 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7861 -7.5937 0.0020 15 6 2.9356 -8.4863 0.0020 16 6 2.6199 -9.8283 0.0076 17 6 3.8268 -10.5344 0.0018 18 6 3.9776 -12.0338 0.0020 19 9 5.3366 -12.3660 0.0022 20 9 3.3678 -12.5637 1.1443 21 9 3.3682 -12.5639 -1.1403 22 6 4.8365 -9.6314 0.0024 23 7 4.3083 -8.3833 0.0025 24 1 4.8135 -7.5552 0.0025 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 1.6273 -10.2540 0.0134 34 1 5.8904 -9.8676 0.0021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187704280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -162.333447 kcal Electronic energy + Delta-G solvation = -21732.240877 eV Core-core repulsion = 17636.241342 eV Total energy + Delta-G solvation = -4095.999534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.27986 -47.83665 -47.74136 -41.86775 -39.18687 -35.62091 -33.52800 -32.46927 -31.34848 -30.04451 -27.08644 -25.90479 -23.87752 -22.39397 -20.90863 -20.87174 -20.51460 -19.10556 -18.62541 -18.39003 -16.93680 -16.48968 -16.15654 -15.71294 -15.48763 -14.82624 -14.61424 -14.54766 -14.51415 -14.22013 -13.96903 -13.95367 -13.93281 -13.76236 -13.67494 -12.98108 -12.39421 -12.32166 -11.93680 -11.85593 -10.98899 -10.86730 -10.65920 -10.28667 -9.98950 -9.80495 -9.53311 -9.19507 -9.12793 -8.77893 -8.44560 -6.08815 -4.12397 1.04936 1.78442 2.30267 2.67912 3.09357 3.16738 3.24831 3.32685 3.35448 3.70013 3.83739 4.28696 4.37961 4.47007 4.57269 4.83677 5.19137 5.27199 5.46533 5.55417 5.63430 5.96094 6.01289 6.16152 6.23818 6.45690 6.64570 6.73064 6.87209 7.43032 7.55141 7.66541 7.89137 8.07923 8.29737 8.94294 9.52286 11.02443 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.047211 B = 0.002310 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.942694 B =12117.622134 C =12520.160686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.723 5.723 13 C 0.582 3.418 14 O -0.524 6.524 15 C -0.036 4.036 16 C -0.066 4.066 17 C -0.280 4.280 18 C 0.542 3.458 19 F -0.182 7.182 20 F -0.178 7.178 21 F -0.178 7.178 22 C 0.089 3.911 23 N -0.526 5.526 24 H 0.427 0.573 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.392 0.608 33 H 0.160 0.840 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 -22.325 0.012 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.373 5.373 13 C 0.367 3.633 14 O -0.399 6.399 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.289 4.289 18 C 0.487 3.513 19 F -0.164 7.164 20 F -0.159 7.159 21 F -0.159 7.159 22 C -0.051 4.051 23 N -0.121 5.121 24 H 0.266 0.734 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.178 0.822 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.318 -22.173 0.013 24.895 hybrid contribution 1.245 1.178 0.000 1.714 sum 12.563 -20.995 0.012 24.467 Atomic orbital electron populations 1.69972 1.06069 1.26682 1.50404 1.25036 0.94868 0.99361 0.95201 0.86522 0.79982 0.83714 0.77673 1.19794 1.20947 1.20950 1.21213 0.92977 0.90897 1.51129 0.92629 1.19036 0.93824 0.90774 0.97791 1.21903 0.99855 0.93294 1.00841 1.21751 0.91711 0.84618 1.02535 1.46115 1.10572 1.05896 1.74763 1.16955 0.87284 0.81638 0.77384 1.90881 1.14841 1.84202 1.50011 1.20664 0.82012 0.95599 1.16601 1.21003 0.98056 0.90149 0.99937 1.19348 0.96001 0.91277 1.22236 1.17388 0.73246 0.87026 0.73634 1.93158 1.33038 1.93891 1.96300 1.93214 1.83256 1.88254 1.51176 1.93215 1.83270 1.88247 1.51165 1.21739 0.99078 0.82623 1.01704 1.42097 1.06467 1.08501 1.55079 0.73377 0.92895 0.96174 0.96162 0.92713 0.92706 0.91251 0.91258 0.77505 0.82201 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.19 5.27 -26.73 -0.14 -2.34 16 11 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 12 N -0.72 -9.19 5.55 -61.61 -0.34 -9.53 16 13 C 0.58 8.11 7.79 -12.86 -0.10 8.01 16 14 O -0.52 -9.43 16.88 5.19 0.09 -9.34 16 15 C -0.04 -0.39 7.06 -81.98 -0.58 -0.97 16 16 C -0.07 -0.72 10.59 -39.12 -0.41 -1.14 16 17 C -0.28 -2.57 5.53 -105.02 -0.58 -3.15 16 18 C 0.54 5.04 3.51 36.00 0.13 5.16 16 19 F -0.18 -1.55 16.75 2.25 0.04 -1.51 16 20 F -0.18 -1.82 17.30 2.25 0.04 -1.78 16 21 F -0.18 -1.82 17.30 2.25 0.04 -1.78 16 22 C 0.09 0.58 11.31 -16.91 -0.19 0.39 16 23 N -0.53 -3.58 5.99 -9.39 -0.06 -3.64 16 24 H 0.43 1.58 8.19 -40.82 -0.33 1.24 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.39 3.63 7.60 -40.82 -0.31 3.32 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.19 0.57 7.92 -52.49 -0.42 0.16 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -32.87 316.86 -5.72 -38.59 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -3.56 Total: -1.47 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.45 Total: -4.75 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.34 Total: -38.70 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.87 -5.72 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187704280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.747 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds