Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00256 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00291 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46676 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37874 * 126.23316 * 179.71495 * 15 13 12 17 17 C 1.39830 * 107.08857 * 179.85057 * 16 15 13 18 18 C 1.50697 * 126.06969 * 180.13658 * 17 16 15 19 19 F 1.39907 * 109.47339 * 180.30010 * 18 17 16 20 20 F 1.39899 * 109.47343 * 300.30647 * 18 17 16 21 21 F 1.39902 * 109.46821 * 60.30557 * 18 17 16 22 22 C 1.35458 * 107.86266 * 0.41920 * 17 16 15 23 23 N 1.35528 * 108.87041 * 359.73859 * 22 17 16 24 24 H 0.97004 * 125.67702 * 180.02562 * 23 22 17 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.45318 * 359.96338 * 16 15 13 34 34 H 1.07999 * 125.56219 * 179.78212 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7861 -7.5937 0.0020 15 6 2.9356 -8.4863 0.0020 16 6 2.6199 -9.8283 0.0076 17 6 3.8268 -10.5344 0.0018 18 6 3.9776 -12.0338 0.0020 19 9 5.3366 -12.3660 0.0022 20 9 3.3678 -12.5637 1.1443 21 9 3.3682 -12.5639 -1.1403 22 6 4.8365 -9.6314 0.0024 23 7 4.3083 -8.3833 0.0025 24 1 4.8135 -7.5552 0.0025 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 1.6273 -10.2540 0.0134 34 1 5.8904 -9.8676 0.0021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187704280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -184.687337 kcal Electronic energy + Delta-G solvation = -21733.210214 eV Core-core repulsion = 17636.241342 eV Total energy + Delta-G solvation = -4096.968872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.00809 -48.54156 -48.50580 -42.60030 -40.31318 -37.05430 -35.28659 -33.48298 -32.77042 -30.94099 -28.69457 -26.76263 -25.33925 -23.60051 -22.39148 -21.65653 -21.37321 -20.10779 -19.36454 -19.15687 -18.54215 -17.60741 -17.14385 -16.87412 -16.67542 -16.40797 -15.84756 -15.39206 -15.35623 -14.95503 -14.94075 -14.81776 -14.71843 -14.67725 -14.66534 -14.28297 -13.78818 -13.63835 -13.53559 -13.06767 -12.79401 -12.57694 -12.36747 -11.72493 -11.70398 -11.31389 -11.11955 -10.56912 -10.48330 -10.31657 -9.57106 -8.20382 -6.31729 0.24495 1.08225 1.41611 1.41978 1.54627 1.66143 1.86921 2.14389 2.14889 2.41697 2.98575 3.12949 3.13969 3.55979 3.71634 4.04510 4.07255 4.17055 4.18965 4.48113 4.51912 4.75844 4.92011 4.92136 5.14723 5.21105 5.28737 5.42102 5.51372 5.69710 5.83703 6.19773 6.21682 6.44063 6.86511 7.02957 7.38203 8.91922 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.047211 B = 0.002310 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.942694 B =12117.622134 C =12520.160686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.583 3.417 14 O -0.574 6.574 15 C -0.056 4.056 16 C -0.076 4.076 17 C -0.303 4.303 18 C 0.545 3.455 19 F -0.174 7.174 20 F -0.186 7.186 21 F -0.186 7.186 22 C 0.127 3.873 23 N -0.508 5.508 24 H 0.444 0.556 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.927 -22.428 0.012 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.360 5.360 13 C 0.371 3.629 14 O -0.454 6.454 15 C -0.168 4.168 16 C -0.102 4.102 17 C -0.310 4.310 18 C 0.491 3.509 19 F -0.156 7.156 20 F -0.168 7.168 21 F -0.168 7.168 22 C -0.015 4.015 23 N -0.105 5.105 24 H 0.287 0.713 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.164 0.836 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 14.965 -22.261 0.012 26.824 hybrid contribution 0.156 1.118 0.001 1.129 sum 15.121 -21.143 0.013 25.994 Atomic orbital electron populations 1.70119 1.07975 1.27724 1.51786 1.26028 0.95725 1.03593 0.94867 0.85375 0.79273 0.78698 0.77538 1.18036 1.20716 1.20726 1.21710 0.93790 0.91930 1.50243 0.91369 1.18959 0.94512 0.92999 0.95145 1.21598 0.98448 0.91493 1.02352 1.21323 0.91860 0.85100 1.01196 1.45772 1.11105 1.04742 1.74356 1.17298 0.87161 0.82275 0.76131 1.90854 1.17217 1.84947 1.52366 1.20005 0.83351 0.94087 1.19380 1.21063 0.98520 0.90763 0.99846 1.19379 0.96045 0.91446 1.24151 1.17367 0.73391 0.87097 0.73092 1.93170 1.32285 1.93865 1.96238 1.93198 1.83507 1.88433 1.51631 1.93198 1.83522 1.88426 1.51623 1.22410 1.00322 0.81447 0.97300 1.42027 1.04849 1.09662 1.53921 0.71278 0.92842 0.98940 0.98928 0.91082 0.91075 0.92782 0.92789 0.75093 0.83559 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.08 4.97 29.85 0.15 1.22 16 10 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 11 C 0.13 4.20 5.67 86.38 0.49 4.69 16 12 N -0.71 -17.15 5.55 -467.07 -2.59 -19.75 16 13 C 0.58 16.12 7.79 86.45 0.67 16.79 16 14 O -0.57 -21.48 16.88 -4.33 -0.07 -21.55 16 15 C -0.06 -1.13 7.06 40.35 0.28 -0.85 16 16 C -0.08 -1.62 10.59 22.57 0.24 -1.38 16 17 C -0.30 -4.90 5.53 -20.12 -0.11 -5.01 16 18 C 0.55 9.27 3.51 71.23 0.25 9.52 16 19 F -0.17 -2.48 16.75 44.97 0.75 -1.73 16 20 F -0.19 -3.67 17.30 44.97 0.78 -2.89 16 21 F -0.19 -3.67 17.30 44.97 0.78 -2.89 16 22 C 0.13 1.14 11.31 83.48 0.94 2.08 16 23 N -0.51 -5.14 5.99 -183.62 -1.10 -6.24 16 24 H 0.44 1.35 8.19 -92.71 -0.76 0.60 16 25 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.41 6.48 7.60 -92.71 -0.70 5.77 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.23 0.00 7.92 -2.91 -0.02 -0.02 16 Total: -1.00 -73.76 316.86 4.33 -69.43 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -0.30 Total: 1.77 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 3.77 Total: -4.92 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.41 Total: -81.96 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 2.31 Total: -7.51 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.76 4.33 -69.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187704280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.253 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds