Wall clock time and date at job start Tue Mar 31 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30870 * 126.18073 * 2 1 4 4 C 1.34558 * 107.26576 * 180.02562 * 3 2 1 5 5 C 1.47843 * 126.05025 * 179.97438 * 4 3 2 6 6 O 1.21562 * 120.00055 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99793 * 180.02562 * 5 4 3 8 8 C 1.39921 * 119.99872 * 184.21181 * 7 5 4 9 9 C 1.39390 * 119.91271 * 324.66176 * 8 7 5 10 10 C 1.38361 * 120.46614 * 179.71677 * 9 8 7 11 11 C 1.38010 * 120.29263 * 0.55713 * 10 9 8 12 12 F 1.35104 * 120.09450 * 179.69613 * 11 10 9 13 13 C 1.41013 * 119.81546 * 359.72206 * 11 10 9 14 14 C 1.41291 * 120.22871 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99515 * 217.01153 * 14 13 11 16 16 C 1.39923 * 120.00237 * 37.00861 * 14 13 11 17 17 N 1.30845 * 120.00034 * 208.89259 * 16 14 13 18 18 Si 1.86800 * 119.99415 * 28.89578 * 16 14 13 19 19 H 1.48499 * 109.47243 * 93.18671 * 18 16 14 20 20 H 1.48502 * 109.46588 * 213.18194 * 18 16 14 21 21 H 1.48494 * 109.47543 * 333.17829 * 18 16 14 22 22 C 1.38169 * 119.91532 * 144.93337 * 8 7 5 23 23 N 1.31514 * 107.89780 * 0.24456 * 4 3 2 24 24 N 1.28845 * 108.69891 * 359.59785 * 23 4 3 25 25 H 0.97005 * 125.74877 * 180.15040 * 24 23 4 26 26 H 1.08993 * 109.47283 * 89.97304 * 1 2 3 27 27 H 1.09004 * 109.46942 * 209.97298 * 1 2 3 28 28 H 1.09000 * 109.46888 * 329.97312 * 1 2 3 29 29 H 0.97002 * 120.00217 * 4.49194 * 7 5 4 30 30 H 1.08000 * 119.76921 * 0.02562 * 9 8 7 31 31 H 1.08008 * 119.85558 * 180.25736 * 10 9 8 32 32 H 0.97006 * 120.00288 * 180.02562 * 17 16 14 33 33 H 1.07995 * 120.14349 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2796 1.0563 0.0000 4 6 3.5526 0.6201 -0.0006 5 6 4.7631 1.4689 -0.0013 6 8 4.6564 2.6798 -0.0010 7 7 5.9849 0.9000 -0.0024 8 6 7.1293 1.7002 0.0859 9 6 7.1526 2.9503 -0.5304 10 6 8.2760 3.7534 -0.4455 11 6 9.3915 3.3198 0.2419 12 9 10.4885 4.1048 0.3171 13 6 9.3832 2.0549 0.8650 14 6 10.5206 1.6020 1.5705 15 1 10.7994 0.5593 1.5330 16 6 11.2856 2.5044 2.3176 17 7 12.5641 2.2889 2.4941 18 14 10.4816 4.0168 3.0631 19 1 10.0547 3.7161 4.4533 20 1 11.4543 5.1389 3.0759 21 1 9.2970 4.3979 2.2529 22 6 8.2353 1.2470 0.7790 23 7 3.5292 -0.6948 -0.0063 24 7 2.3017 -1.0862 -0.0006 25 1 2.0008 -2.0084 -0.0008 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 6.0711 -0.0639 -0.0684 30 1 6.2859 3.2964 -1.0738 31 1 8.2818 4.7221 -0.9233 32 1 13.0944 2.9143 3.0124 33 1 8.2182 0.2767 1.2530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189873708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:07 Heat of formation + Delta-G solvation = 10.594739 kcal Electronic energy + Delta-G solvation = -21798.520179 eV Core-core repulsion = 18160.708560 eV Total energy + Delta-G solvation = -3637.811619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.52349 -44.59886 -41.30507 -38.97939 -36.12835 -35.24673 -34.61406 -33.91584 -32.39779 -30.43390 -28.85089 -27.22351 -26.00859 -23.27879 -23.11853 -22.75937 -21.40752 -20.00505 -19.34686 -18.63483 -18.10323 -17.86829 -17.64841 -16.96124 -16.61383 -16.10563 -15.82392 -15.63985 -15.11191 -14.84862 -14.73895 -14.13042 -13.86488 -13.77107 -13.69466 -13.52078 -13.16907 -13.02894 -12.85361 -12.56856 -11.92737 -11.77660 -11.70544 -11.56737 -11.39800 -11.07262 -10.92270 -10.58660 -9.68342 -8.99255 -8.87863 -6.53038 0.02277 0.54993 0.63959 1.03272 1.27867 1.36217 1.42825 1.51380 1.85486 2.10664 2.15975 2.50900 3.02159 3.23483 3.27061 3.75150 3.88800 4.14677 4.49704 4.61519 4.71432 4.72960 4.74934 4.77250 4.79657 5.13100 5.21723 5.23801 5.45370 5.51402 5.65460 5.73711 5.87531 6.04377 6.22436 6.35750 6.58846 6.71953 6.88276 7.00310 8.07851 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.033799 B = 0.003608 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.219622 B = 7758.734523 C = 7992.422694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.231 3.769 3 N -0.504 5.504 4 C 0.131 3.869 5 C 0.609 3.391 6 O -0.530 6.530 7 N -0.638 5.638 8 C 0.163 3.837 9 C -0.200 4.200 10 C -0.101 4.101 11 C -0.044 4.044 12 F -0.159 7.159 13 C 0.065 3.935 14 C -0.496 4.496 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.823 5.823 18 Si 0.947 3.053 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.256 1.256 22 C -0.201 4.201 23 N -0.270 5.270 24 N -0.374 5.374 25 H 0.472 0.528 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.426 0.574 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.294 0.706 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.185 -9.174 -3.956 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.046 4.046 3 N -0.231 5.231 4 C -0.149 4.149 5 C 0.393 3.607 6 O -0.403 6.403 7 N -0.284 5.284 8 C 0.069 3.931 9 C -0.221 4.221 10 C -0.121 4.121 11 C -0.064 4.064 12 F -0.138 7.138 13 C 0.061 3.939 14 C -0.524 4.524 15 H 0.094 0.906 16 C -0.149 4.149 17 N -0.447 5.447 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.180 1.180 22 C -0.222 4.222 23 N -0.113 5.113 24 N -0.101 5.101 25 H 0.324 0.676 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.265 0.735 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.449 -8.172 -3.853 24.199 hybrid contribution 0.407 -0.293 0.397 0.639 sum -22.042 -8.465 -3.455 23.863 Atomic orbital electron populations 1.20655 0.78981 1.06873 1.06362 1.25893 0.99212 0.81122 0.98358 1.71229 1.00070 1.30668 1.21173 1.23194 0.93399 0.88186 1.10116 1.16650 0.81439 0.86108 0.76521 1.90807 1.86120 1.14513 1.48815 1.42978 1.02890 1.11267 1.71269 1.17497 0.86011 0.92361 0.97211 1.20571 0.98738 0.95546 1.07263 1.20766 0.91699 1.00277 0.99318 1.18126 0.85041 0.94216 1.09048 1.91054 1.53703 1.73984 1.95067 1.17584 0.93050 0.90561 0.92660 1.19169 1.07243 0.97209 1.28792 0.90625 1.26618 0.93797 1.00383 0.94106 1.69790 1.06798 1.37912 1.30237 0.85729 0.80895 0.78493 0.77763 1.20168 1.19212 1.17986 1.20852 0.91819 1.03261 1.06279 1.74174 1.04407 1.13090 1.19614 1.45003 1.01971 1.12518 1.50577 0.67590 0.87063 0.85944 0.88538 0.73508 0.85342 0.84804 0.89497 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.23 3.54 8.25 138.17 1.14 4.68 16 3 N -0.50 -13.94 11.41 -180.96 -2.06 -16.01 16 4 C 0.13 3.89 7.96 137.11 1.09 4.98 16 5 C 0.61 22.02 7.67 86.79 0.67 22.68 16 6 O -0.53 -23.01 14.54 -3.91 -0.06 -23.06 16 7 N -0.64 -21.74 5.33 -306.20 -1.63 -23.37 16 8 C 0.16 6.74 6.28 38.11 0.24 6.98 16 9 C -0.20 -8.70 8.69 22.58 0.20 -8.51 16 10 C -0.10 -4.57 10.00 22.24 0.22 -4.34 16 11 C -0.04 -2.24 5.04 22.90 0.12 -2.12 16 12 F -0.16 -8.33 13.09 44.97 0.59 -7.74 16 13 C 0.07 3.36 4.81 -21.26 -0.10 3.26 16 14 C -0.50 -27.68 9.37 23.43 0.22 -27.47 16 15 H 0.08 4.38 8.06 -2.91 -0.02 4.36 16 16 C 0.07 3.83 4.72 85.25 0.40 4.23 16 17 N -0.82 -45.71 13.93 21.82 0.30 -45.41 16 18 Si 0.95 45.64 25.48 68.60 1.75 47.38 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.26 -12.82 5.44 99.48 0.54 -12.28 16 22 C -0.20 -8.95 9.70 22.84 0.22 -8.73 16 23 N -0.27 -5.97 11.99 -52.45 -0.63 -6.60 16 24 N -0.37 -4.75 6.93 -50.60 -0.35 -5.10 16 25 H 0.47 1.06 8.96 -219.79 -1.97 -0.91 16 26 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.12 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.43 11.78 8.53 -92.71 -0.79 10.99 16 30 H 0.13 5.47 6.23 -2.91 -0.02 5.45 16 31 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 32 H 0.29 14.80 8.30 -92.70 -0.77 14.03 16 33 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -76.24 295.95 1.35 -74.89 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -1.72 Total: 8.88 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.16 Total: -3.86 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.37 Total: -96.49 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.59 Total: -7.74 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.75 Total: 47.38 kcal Total: -76.24 1.35 -74.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189873708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.487 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds