Wall clock time and date at job start Tue Mar 31 2020 08:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28717 * 126.03651 * 2 1 4 4 N 1.28513 * 110.64046 * 180.27681 * 3 2 1 5 5 C 1.33318 * 109.44392 * 359.73734 * 4 3 2 6 6 C 1.37027 * 106.36930 * 0.02562 * 5 4 3 7 7 C 1.47198 * 127.19204 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99628 * 353.80225 * 7 6 5 9 9 N 1.34774 * 119.99925 * 173.80290 * 7 6 5 10 10 C 1.39919 * 119.99766 * 175.68035 * 9 7 6 11 11 C 1.39395 * 119.91146 * 325.96845 * 10 9 7 12 12 C 1.38363 * 120.46545 * 180.25550 * 11 10 9 13 13 C 1.38014 * 120.29083 * 359.45068 * 12 11 10 14 14 F 1.35100 * 120.09361 * 180.25206 * 13 12 11 15 15 C 1.41013 * 119.81563 * 0.55128 * 13 12 11 16 16 C 1.41293 * 120.22908 * 179.70369 * 15 13 12 17 17 H 1.07998 * 120.00082 * 27.62634 * 16 15 13 18 18 C 1.39924 * 119.99912 * 207.62659 * 16 15 13 19 19 N 1.30847 * 119.99894 * 12.34724 * 18 16 15 20 20 Si 1.86800 * 119.99615 * 192.34478 * 18 16 15 21 21 H 1.48497 * 109.47215 * 60.00254 * 20 18 16 22 22 H 1.48508 * 109.46695 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47494 * 299.99877 * 20 18 16 24 24 C 1.38166 * 119.91390 * 145.95679 * 10 9 7 25 25 H 1.09006 * 109.47009 * 264.77377 * 1 2 3 26 26 H 1.08997 * 109.47209 * 24.77167 * 1 2 3 27 27 H 1.08998 * 109.47087 * 144.77646 * 1 2 3 28 28 H 1.08000 * 126.81552 * 179.97438 * 5 4 3 29 29 H 0.96993 * 120.00131 * 355.67217 * 9 7 6 30 30 H 1.07994 * 119.76606 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.85143 * 179.70642 * 12 11 10 32 32 H 0.97005 * 119.99877 * 179.97438 * 19 18 16 33 33 H 1.07996 * 120.14464 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0058 5 6 3.5553 -0.6302 -0.0042 6 6 2.2712 -1.1082 0.0026 7 6 1.8464 -2.5175 0.0062 8 8 2.6730 -3.4021 -0.1105 9 7 0.5415 -2.8277 0.1388 10 6 0.1271 -4.1613 0.0518 11 6 0.7850 -5.0389 -0.8085 12 6 0.3814 -6.3586 -0.9075 13 6 -0.6714 -6.8236 -0.1459 14 9 -1.0589 -8.1143 -0.2420 15 6 -1.3456 -5.9463 0.7283 16 6 -2.4286 -6.4115 1.5074 17 1 -2.4793 -7.4512 1.7954 18 6 -3.4353 -5.5253 1.9060 19 7 -3.5101 -4.3351 1.3674 20 14 -4.6725 -6.0413 3.2070 21 1 -3.9588 -6.3642 4.4685 22 1 -5.6278 -4.9305 3.4497 23 1 -5.4142 -7.2389 2.7374 24 6 -0.9329 -4.6049 0.8189 25 1 -0.3633 -0.0936 1.0235 26 1 -0.3633 0.9331 -0.4306 27 1 -0.3633 -0.8395 -0.5927 28 1 4.4635 -1.2147 -0.0083 29 1 -0.1102 -2.1265 0.2948 30 1 1.6126 -4.6850 -1.4052 31 1 0.8952 -7.0288 -1.5808 32 1 -4.2083 -3.7208 1.6435 33 1 -1.4419 -3.9247 1.4857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193135319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:27 Heat of formation + Delta-G solvation = 48.305008 kcal Electronic energy + Delta-G solvation = -22200.231713 eV Core-core repulsion = 18564.055334 eV Total energy + Delta-G solvation = -3636.176379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.34137 -43.42560 -39.85975 -37.28868 -35.40463 -34.29912 -33.43423 -31.50031 -29.93346 -28.43008 -28.33345 -25.54233 -24.10717 -22.50745 -21.93007 -21.15501 -20.25169 -18.10853 -17.80541 -16.97679 -16.74420 -16.22357 -15.94910 -15.33047 -14.84438 -14.79690 -14.34065 -14.13758 -14.06350 -13.65009 -13.23264 -12.98309 -12.76710 -12.27765 -12.14735 -11.86859 -11.65853 -11.39289 -11.28613 -11.17751 -10.85571 -10.43863 -10.38722 -10.05627 -9.82282 -9.57372 -9.46744 -9.25027 -7.74740 -7.20750 -6.90608 -4.62152 0.80598 1.93545 2.16272 2.41615 2.58230 2.94463 2.98372 3.01580 3.10606 3.25212 3.77702 4.00229 4.32398 4.38394 4.62094 4.74510 4.91734 5.03948 5.25551 5.30737 5.79683 5.90754 5.94969 6.14207 6.31383 6.38652 6.61088 6.68975 6.97061 7.25470 7.27669 7.45668 7.69829 7.73597 7.92042 8.14538 8.20353 8.35765 8.55124 8.61828 9.95579 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004678 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.013556 B = 5983.666973 C = 7215.861244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.275 5.275 3 N -0.060 5.060 4 N -0.277 5.277 5 C 0.027 3.973 6 C -0.066 4.066 7 C 0.586 3.414 8 O -0.498 6.498 9 N -0.660 5.660 10 C 0.132 3.868 11 C -0.202 4.202 12 C -0.112 4.112 13 C -0.024 4.024 14 F -0.161 7.161 15 C 0.098 3.902 16 C -0.451 4.451 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.916 3.084 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.158 4.158 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.203 0.797 29 H 0.400 0.600 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.283 0.717 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 8.110 -0.894 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.074 5.074 3 N -0.041 5.041 4 N -0.140 5.140 5 C -0.133 4.133 6 C -0.199 4.199 7 C 0.370 3.630 8 O -0.370 6.370 9 N -0.308 5.308 10 C 0.041 3.959 11 C -0.223 4.223 12 C -0.132 4.132 13 C -0.045 4.045 14 F -0.140 7.140 15 C 0.094 3.906 16 C -0.480 4.480 17 H 0.102 0.898 18 C -0.141 4.141 19 N -0.427 5.427 20 Si 0.740 3.260 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.180 4.180 25 H 0.123 0.877 26 H 0.135 0.865 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.239 0.761 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.639 9.187 -0.991 9.610 hybrid contribution -1.248 -1.123 0.590 1.780 sum 1.390 8.064 -0.401 8.193 Atomic orbital electron populations 1.22686 0.72175 1.07162 1.06086 1.47792 1.09482 1.04296 1.45856 1.78204 0.96800 1.11680 1.17456 1.74940 1.08998 1.12556 1.17497 1.23837 0.96951 0.91078 1.01404 1.22478 0.92324 0.89544 1.15578 1.16774 0.83078 0.85074 0.78074 1.90877 1.51616 1.46451 1.48083 1.43756 1.07276 1.09143 1.70634 1.17562 0.97664 0.81932 0.98763 1.20148 1.04368 0.93145 1.04654 1.20400 0.96878 0.95784 1.00114 1.17963 1.02276 0.79718 1.04528 1.91286 1.91221 1.35732 1.95734 1.17345 0.92034 0.90706 0.90550 1.19478 1.03863 0.97063 1.27612 0.89754 1.25879 0.98369 0.94234 0.95613 1.69749 1.30660 1.06912 1.35334 0.86219 0.79458 0.79312 0.81005 1.18672 1.20191 1.18750 1.20926 0.98167 0.97123 1.01735 0.87651 0.86495 0.87495 0.77986 0.76148 0.86879 0.87431 0.90663 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 9.85 59.85 0.59 1.05 16 2 N -0.28 -3.31 3.79 -64.12 -0.24 -3.55 16 3 N -0.06 -0.83 13.14 60.35 0.79 -0.03 16 4 N -0.28 -4.02 12.35 30.48 0.38 -3.64 16 5 C 0.03 0.37 11.87 -17.35 -0.21 0.16 16 6 C -0.07 -0.93 6.98 -82.34 -0.57 -1.50 16 7 C 0.59 9.67 7.54 -12.62 -0.10 9.58 16 8 O -0.50 -9.73 14.60 5.25 0.08 -9.65 16 9 N -0.66 -10.87 5.04 -10.93 -0.06 -10.93 16 10 C 0.13 2.75 6.26 -83.76 -0.52 2.23 16 11 C -0.20 -4.34 8.66 -39.10 -0.34 -4.68 16 12 C -0.11 -2.48 10.00 -39.62 -0.40 -2.87 16 13 C -0.02 -0.59 7.31 -38.61 -0.28 -0.87 16 14 F -0.16 -3.91 16.74 2.25 0.04 -3.87 16 15 C 0.10 2.44 5.56 -106.78 -0.59 1.85 16 16 C -0.45 -11.32 8.77 -37.79 -0.33 -11.65 16 17 H 0.08 2.11 7.75 -52.49 -0.41 1.70 16 18 C 0.08 1.76 5.23 -17.34 -0.09 1.66 16 19 N -0.80 -18.22 10.85 55.55 0.60 -17.62 16 20 Si 0.92 17.40 29.58 -169.99 -5.03 12.38 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.16 -3.61 8.57 -38.70 -0.33 -3.95 16 25 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.11 0.82 6.09 -51.93 -0.32 0.51 16 28 H 0.20 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.40 5.27 4.94 -40.82 -0.20 5.07 16 30 H 0.11 2.35 6.41 -52.49 -0.34 2.02 16 31 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.28 5.79 8.30 -40.82 -0.34 5.46 16 33 H 0.13 3.00 6.19 -52.49 -0.32 2.67 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -29.38 296.04 -4.56 -33.94 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.41 Total: 7.51 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -3.17 Total: -8.99 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.47 Total: -35.77 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.38 -4.56 -33.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193135319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.243 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds