Wall clock time and date at job start Tue Mar 31 2020 08:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28717 * 126.03651 * 2 1 4 4 N 1.28513 * 110.64046 * 180.27681 * 3 2 1 5 5 C 1.33318 * 109.44392 * 359.73734 * 4 3 2 6 6 C 1.37027 * 106.36930 * 0.02562 * 5 4 3 7 7 C 1.47198 * 127.19204 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99628 * 353.80225 * 7 6 5 9 9 N 1.34774 * 119.99925 * 173.80290 * 7 6 5 10 10 C 1.39919 * 119.99766 * 175.68035 * 9 7 6 11 11 C 1.39395 * 119.91146 * 325.96845 * 10 9 7 12 12 C 1.38363 * 120.46545 * 180.25550 * 11 10 9 13 13 C 1.38014 * 120.29083 * 359.45068 * 12 11 10 14 14 F 1.35100 * 120.09361 * 180.25206 * 13 12 11 15 15 C 1.41013 * 119.81563 * 0.55128 * 13 12 11 16 16 C 1.41293 * 120.22908 * 179.70369 * 15 13 12 17 17 H 1.07998 * 120.00082 * 27.62634 * 16 15 13 18 18 C 1.39924 * 119.99912 * 207.62659 * 16 15 13 19 19 N 1.30847 * 119.99894 * 12.34724 * 18 16 15 20 20 Si 1.86800 * 119.99615 * 192.34478 * 18 16 15 21 21 H 1.48497 * 109.47215 * 60.00254 * 20 18 16 22 22 H 1.48508 * 109.46695 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47494 * 299.99877 * 20 18 16 24 24 C 1.38166 * 119.91390 * 145.95679 * 10 9 7 25 25 H 1.09006 * 109.47009 * 264.77377 * 1 2 3 26 26 H 1.08997 * 109.47209 * 24.77167 * 1 2 3 27 27 H 1.08998 * 109.47087 * 144.77646 * 1 2 3 28 28 H 1.08000 * 126.81552 * 179.97438 * 5 4 3 29 29 H 0.96993 * 120.00131 * 355.67217 * 9 7 6 30 30 H 1.07994 * 119.76606 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.85143 * 179.70642 * 12 11 10 32 32 H 0.97005 * 119.99877 * 179.97438 * 19 18 16 33 33 H 1.07996 * 120.14464 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0058 5 6 3.5553 -0.6302 -0.0042 6 6 2.2712 -1.1082 0.0026 7 6 1.8464 -2.5175 0.0062 8 8 2.6730 -3.4021 -0.1105 9 7 0.5415 -2.8277 0.1388 10 6 0.1271 -4.1613 0.0518 11 6 0.7850 -5.0389 -0.8085 12 6 0.3814 -6.3586 -0.9075 13 6 -0.6714 -6.8236 -0.1459 14 9 -1.0589 -8.1143 -0.2420 15 6 -1.3456 -5.9463 0.7283 16 6 -2.4286 -6.4115 1.5074 17 1 -2.4793 -7.4512 1.7954 18 6 -3.4353 -5.5253 1.9060 19 7 -3.5101 -4.3351 1.3674 20 14 -4.6725 -6.0413 3.2070 21 1 -3.9588 -6.3642 4.4685 22 1 -5.6278 -4.9305 3.4497 23 1 -5.4142 -7.2389 2.7374 24 6 -0.9329 -4.6049 0.8189 25 1 -0.3633 -0.0936 1.0235 26 1 -0.3633 0.9331 -0.4306 27 1 -0.3633 -0.8395 -0.5927 28 1 4.4635 -1.2147 -0.0083 29 1 -0.1102 -2.1265 0.2948 30 1 1.6126 -4.6850 -1.4052 31 1 0.8952 -7.0288 -1.5808 32 1 -4.2083 -3.7208 1.6435 33 1 -1.4419 -3.9247 1.4857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193135319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:27 Heat of formation + Delta-G solvation = 29.714304 kcal Electronic energy + Delta-G solvation = -22201.037867 eV Core-core repulsion = 18564.055334 eV Total energy + Delta-G solvation = -3636.982533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.20562 -44.47221 -41.31081 -38.94857 -36.59365 -35.78662 -34.95619 -32.65484 -31.70316 -29.95481 -29.24188 -27.32070 -25.38345 -23.60794 -23.52573 -22.61481 -21.73317 -19.48090 -19.28073 -18.08227 -18.00483 -17.93118 -17.44888 -16.99035 -16.36954 -16.04819 -15.97717 -15.69507 -15.34286 -14.76708 -14.45600 -14.38320 -14.02954 -13.88231 -13.52650 -13.36907 -13.25107 -13.03589 -12.80490 -12.50229 -12.31151 -12.07102 -11.62102 -11.43844 -11.32741 -11.15709 -10.88580 -10.66930 -9.53770 -8.92163 -8.61809 -6.46750 -0.31872 0.63568 0.84276 1.03816 1.15738 1.41010 1.49081 1.51327 1.78756 1.91273 2.20438 2.64147 3.00086 3.41528 3.45965 3.70564 3.89830 4.01112 4.08049 4.26727 4.34809 4.50922 4.61422 4.79794 4.89929 4.91425 4.95903 5.19766 5.22254 5.53838 5.63207 5.71202 5.93545 6.05346 6.30236 6.48767 6.73060 6.77329 6.90376 7.14290 8.25695 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004678 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.013556 B = 5983.666973 C = 7215.861244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.260 5.260 3 N -0.062 5.062 4 N -0.298 5.298 5 C 0.034 3.966 6 C -0.079 4.079 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.652 5.652 10 C 0.145 3.855 11 C -0.207 4.207 12 C -0.108 4.108 13 C -0.060 4.060 14 F -0.169 7.169 15 C 0.072 3.928 16 C -0.490 4.490 17 H 0.070 0.930 18 C 0.045 3.955 19 N -0.812 5.812 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.267 1.267 24 C -0.168 4.168 25 H 0.126 0.874 26 H 0.145 0.855 27 H 0.108 0.892 28 H 0.220 0.780 29 H 0.416 0.584 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.295 0.705 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 9.795 -0.540 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.060 5.060 3 N -0.044 5.044 4 N -0.160 5.160 5 C -0.127 4.127 6 C -0.213 4.213 7 C 0.381 3.619 8 O -0.404 6.404 9 N -0.301 5.301 10 C 0.052 3.948 11 C -0.228 4.228 12 C -0.128 4.128 13 C -0.081 4.081 14 F -0.148 7.148 15 C 0.069 3.931 16 C -0.519 4.519 17 H 0.089 0.911 18 C -0.171 4.171 19 N -0.438 5.438 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.192 1.192 24 C -0.190 4.190 25 H 0.144 0.856 26 H 0.163 0.837 27 H 0.126 0.874 28 H 0.237 0.763 29 H 0.258 0.742 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.044 10.930 -0.651 11.138 hybrid contribution -1.047 -1.547 0.429 1.916 sum 0.997 9.383 -0.222 9.439 Atomic orbital electron populations 1.23144 0.69772 1.08795 1.07757 1.48083 1.10729 1.03218 1.43942 1.78157 0.96920 1.11982 1.17306 1.74951 1.09496 1.12962 1.18638 1.24205 0.97575 0.90923 0.99998 1.22050 0.92874 0.88660 1.17682 1.16925 0.82419 0.85788 0.76771 1.90861 1.52367 1.47736 1.49403 1.43651 1.07983 1.07948 1.70533 1.17538 0.96393 0.83616 0.97229 1.20351 1.04515 0.93095 1.04812 1.20655 0.96035 0.96472 0.99591 1.18241 1.03932 0.79756 1.06158 1.91246 1.91477 1.36146 1.95911 1.17708 0.92529 0.91929 0.90964 1.19631 1.05450 0.97138 1.29636 0.91149 1.26561 0.99436 0.94151 0.96992 1.69734 1.31307 1.07325 1.35402 0.85250 0.77246 0.79193 0.78106 1.18702 1.18210 1.19189 1.20891 0.99091 0.96471 1.02520 0.85598 0.83690 0.87354 0.76297 0.74192 0.85946 0.85275 0.89385 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.85 127.77 1.26 1.81 16 2 N -0.26 -5.60 3.79 -356.79 -1.35 -6.96 16 3 N -0.06 -1.57 13.14 37.02 0.49 -1.09 16 4 N -0.30 -8.15 12.35 -57.49 -0.71 -8.86 16 5 C 0.03 0.85 11.87 84.18 1.00 1.85 16 6 C -0.08 -2.07 6.98 40.40 0.28 -1.79 16 7 C 0.60 18.73 7.54 86.60 0.65 19.38 16 8 O -0.53 -20.10 14.60 -4.13 -0.06 -20.16 16 9 N -0.65 -20.43 5.04 -306.75 -1.55 -21.98 16 10 C 0.15 5.93 6.26 38.11 0.24 6.17 16 11 C -0.21 -8.74 8.66 22.58 0.20 -8.55 16 12 C -0.11 -4.77 10.00 22.25 0.22 -4.55 16 13 C -0.06 -3.01 7.31 22.90 0.17 -2.85 16 14 F -0.17 -8.47 16.74 44.97 0.75 -7.72 16 15 C 0.07 3.71 5.56 -21.26 -0.12 3.59 16 16 C -0.49 -25.19 8.77 23.43 0.21 -24.99 16 17 H 0.07 3.67 7.75 -2.91 -0.02 3.65 16 18 C 0.05 2.06 5.23 85.25 0.45 2.50 16 19 N -0.81 -36.26 10.85 21.82 0.24 -36.03 16 20 Si 0.98 35.05 29.58 68.60 2.03 37.08 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 22 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 24 C -0.17 -7.70 8.57 22.84 0.20 -7.51 16 25 H 0.13 1.13 8.12 -2.38 -0.02 1.11 16 26 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.11 1.37 6.09 -2.39 -0.01 1.35 16 28 H 0.22 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.42 10.10 4.94 -92.71 -0.46 9.64 16 30 H 0.12 4.95 6.41 -2.91 -0.02 4.93 16 31 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 32 H 0.30 11.59 8.30 -92.70 -0.77 10.82 16 33 H 0.13 5.95 6.19 -2.91 -0.02 5.93 16 Total: -1.00 -63.25 296.04 5.31 -57.94 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.73 Total: 22.69 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.74 Total: -14.91 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -2.89 Total: -74.91 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.75 Total: -7.72 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -63.25 5.31 -57.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193135319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.649 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds