Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43204 * 119.99950 * 98.91668 * 3 2 1 5 5 N 3.51041 * 140.68919 * 98.90923 * 2 1 3 6 6 C 1.41088 * 119.99797 * 278.90803 * 3 2 1 7 7 C 1.38870 * 120.00166 * 5.26519 * 6 3 2 8 8 H 1.08002 * 119.99870 * 337.96525 * 7 6 3 9 9 C 1.40902 * 119.99687 * 157.95985 * 7 6 3 10 10 N 1.30302 * 120.00590 * 350.92209 * 9 7 6 11 11 Si 1.86807 * 119.99752 * 170.92137 * 9 7 6 12 12 H 1.48501 * 109.47305 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46883 * 120.00062 * 11 9 7 14 14 H 1.48498 * 109.47117 * 239.99916 * 11 9 7 15 15 N 1.38649 * 119.99774 * 185.26519 * 6 3 2 16 16 C 1.34777 * 120.00056 * 119.94542 * 15 6 3 17 17 S 1.71201 * 119.99946 * 354.95884 * 16 15 6 18 18 N 1.34773 * 120.00022 * 174.95246 * 16 15 6 19 19 C 1.46498 * 120.00221 * 180.02562 * 18 16 15 20 20 C 1.54276 * 110.02981 * 272.63435 * 19 18 16 21 21 C 1.54968 * 104.15530 * 217.13459 * 20 19 18 22 22 C 1.54879 * 102.78061 * 37.88757 * 21 20 19 23 23 C 1.53870 * 110.03781 * 155.41498 * 19 18 16 24 24 H 0.97001 * 120.00452 * 185.04106 * 10 9 7 25 25 H 0.97002 * 119.99941 * 299.95329 * 15 6 3 26 26 H 0.97001 * 120.00197 * 359.72967 * 18 16 15 27 27 H 1.09006 * 110.01800 * 34.01988 * 19 18 16 28 28 H 1.08999 * 110.48016 * 335.77797 * 20 19 18 29 29 H 1.08995 * 110.48655 * 98.42303 * 20 19 18 30 30 H 1.09002 * 110.71871 * 279.56810 * 21 20 19 31 31 H 1.09006 * 110.91930 * 156.29748 * 21 20 19 32 32 H 1.09000 * 110.48862 * 203.40573 * 22 21 20 33 33 H 1.09006 * 110.60213 * 80.81248 * 22 21 20 34 34 H 1.08993 * 110.03355 * 238.57130 * 23 19 18 35 35 H 1.09003 * 110.02936 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2840 0.1932 -1.2252 5 7 3.8521 0.3444 -2.1971 6 6 3.2736 -0.1883 1.2071 7 6 2.5837 -0.4834 2.3757 8 1 1.5382 -0.2279 2.4647 9 6 3.2479 -1.1164 3.4450 10 7 4.4528 -1.5837 3.2787 11 14 2.4010 -1.2857 5.1015 12 1 1.0478 -0.6782 5.0300 13 1 2.2794 -2.7240 5.4505 14 1 3.2022 -0.5902 6.1405 15 7 4.6556 -0.0792 1.2267 16 6 5.2476 0.8451 2.0089 17 16 4.2929 1.9687 2.8788 18 7 6.5913 0.8846 2.1063 19 6 7.2348 1.8888 2.9569 20 6 7.4615 3.1899 2.1594 21 6 8.8280 3.7136 2.6691 22 6 9.6471 2.4120 2.8523 23 6 8.6237 1.3946 3.3977 24 1 4.8819 -2.0834 3.9908 25 1 5.1964 -0.6680 0.6774 26 1 7.1321 0.2454 1.6165 27 1 6.6153 2.0898 3.8310 28 1 7.5083 2.9791 1.0910 29 1 6.6721 3.9106 2.3728 30 1 8.7114 4.2337 3.6199 31 1 9.2960 4.3638 1.9298 32 1 10.4522 2.5657 3.5709 33 1 10.0490 2.0741 1.8970 34 1 8.6785 1.3564 4.4855 35 1 8.8188 0.4072 2.9790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198571505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = 62.909570 kcal Electronic energy + Delta-G solvation = -20322.575983 eV Core-core repulsion = 17253.246082 eV Total energy + Delta-G solvation = -3069.329902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.39961 -38.08657 -35.74179 -34.88980 -34.63083 -33.32021 -30.56106 -28.79822 -27.43947 -27.16557 -23.53212 -21.90279 -20.73953 -20.56527 -19.16557 -18.21614 -17.40490 -16.47171 -16.27107 -15.53698 -15.09653 -14.77942 -14.34029 -13.81262 -13.43114 -13.09219 -12.82351 -12.60470 -12.32789 -12.02499 -11.77476 -11.68142 -11.55500 -11.51008 -11.34418 -11.27346 -11.10987 -10.95242 -10.91799 -10.77213 -10.67892 -10.45532 -10.35432 -10.14089 -9.03991 -8.09257 -7.68035 -6.98423 -6.56570 -5.29538 1.75143 2.45509 2.69149 2.77380 2.86393 2.95694 3.26643 3.49137 3.83061 4.04295 4.04985 4.28442 4.39075 4.49925 4.57006 4.80238 5.17981 5.33912 5.40140 5.48458 5.53713 5.56523 5.58639 5.71176 5.79839 5.97489 6.12529 6.17102 6.24006 6.30517 6.33334 6.65608 6.84241 7.10396 7.29383 7.61022 7.68715 7.98515 8.15396 8.91413 9.11912 9.16339 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.006590 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.283178 B = 4247.556433 C = 5507.663670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.328 3.672 3 C -0.304 4.304 4 C 0.307 3.693 5 N -0.538 5.538 6 C 0.368 3.632 7 C -0.311 4.311 8 H 0.119 0.881 9 C 0.082 3.918 10 N -0.742 5.742 11 Si 0.935 3.065 12 H -0.245 1.245 13 H -0.268 1.268 14 H -0.259 1.259 15 N -0.604 5.604 16 C 0.601 3.399 17 S -0.651 6.651 18 N -0.687 5.687 19 C 0.147 3.853 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.302 0.698 25 H 0.394 0.606 26 H 0.391 0.609 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.706 0.208 7.254 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C 0.020 3.980 3 C -0.323 4.323 4 C 0.001 3.999 5 N -0.220 5.220 6 C 0.266 3.734 7 C -0.338 4.338 8 H 0.137 0.863 9 C -0.148 4.148 10 N -0.361 5.361 11 Si 0.756 3.244 12 H -0.168 1.168 13 H -0.192 1.192 14 H -0.183 1.183 15 N -0.226 5.226 16 C 0.243 3.757 17 S -0.525 6.525 18 N -0.318 5.318 19 C 0.042 3.958 20 C -0.170 4.170 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.169 4.169 24 H 0.113 0.887 25 H 0.232 0.768 26 H 0.227 0.773 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.387 1.168 6.507 14.041 hybrid contribution 1.151 -1.448 0.102 1.853 sum 13.538 -0.280 6.610 15.068 Atomic orbital electron populations 1.81057 1.12117 1.19122 1.08919 1.24519 0.91125 0.90293 0.92081 1.12617 0.83239 1.49599 0.86840 1.25233 0.92550 0.90200 0.91937 1.81062 1.09976 1.20047 1.10952 1.16439 0.77652 0.87793 0.91551 1.20225 0.99040 1.19905 0.94626 0.86340 1.26546 0.94120 0.91760 1.02374 1.69366 1.11697 1.19132 1.35890 0.85720 0.81552 0.78882 0.78196 1.16768 1.19246 1.18275 1.41614 1.07292 1.32647 1.41006 1.21844 0.85252 0.85797 0.82825 1.93102 1.63901 1.40244 1.55294 1.45054 1.03455 1.35171 1.48082 1.21977 0.92916 0.86433 0.94512 1.22767 0.97412 0.97143 0.99663 1.22488 0.95473 0.96876 1.01332 1.22352 0.97479 0.95428 1.00869 1.22448 0.93708 0.99177 1.01608 0.88657 0.76842 0.77284 0.86600 0.91613 0.89769 0.91193 0.91556 0.91603 0.91727 0.90570 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.93 18.54 41.84 0.78 -12.16 16 2 C 0.33 7.72 13.91 -22.47 -0.31 7.41 16 3 C -0.30 -6.78 5.88 -104.96 -0.62 -7.40 16 4 C 0.31 6.92 14.80 -22.48 -0.33 6.59 16 5 N -0.54 -12.44 18.54 41.83 0.78 -11.66 16 6 C 0.37 7.73 5.10 -83.46 -0.43 7.31 16 7 C -0.31 -6.61 7.09 -38.34 -0.27 -6.88 16 8 H 0.12 2.64 7.03 -52.49 -0.37 2.27 16 9 C 0.08 1.58 4.64 -17.19 -0.08 1.50 16 10 N -0.74 -13.45 11.06 55.60 0.61 -12.84 16 11 Si 0.94 15.94 29.58 -169.99 -5.03 10.91 16 12 H -0.25 -4.37 7.11 56.52 0.40 -3.97 16 13 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 14 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 15 N -0.60 -11.12 3.22 -11.16 -0.04 -11.15 16 16 C 0.60 10.85 6.47 -86.92 -0.56 10.29 16 17 S -0.65 -14.11 25.88 -107.50 -2.78 -16.89 16 18 N -0.69 -9.54 5.05 -54.43 -0.27 -9.81 16 19 C 0.15 1.84 2.96 -66.81 -0.20 1.64 16 20 C -0.13 -1.59 6.53 -25.02 -0.16 -1.75 16 21 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 22 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 23 C -0.13 -1.24 6.57 -25.61 -0.17 -1.40 16 24 H 0.30 4.97 8.29 -40.82 -0.34 4.63 16 25 H 0.39 6.49 8.82 -40.82 -0.36 6.13 16 26 H 0.39 4.50 8.33 -40.82 -0.34 4.16 16 27 H 0.12 1.75 6.81 -51.93 -0.35 1.40 16 28 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.60 7.61 -51.93 -0.40 0.21 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -26.74 324.65 -8.44 -35.19 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -3.91 Total: 8.75 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: -3.47 Total: 14.77 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 1.86 Total: -57.62 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal Atomic # 16 Polarization: -14.11 SS G_CDS: -2.78 Total: -16.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.74 -8.44 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198571505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.097 kcal (2) G-P(sol) polarization free energy of solvation -26.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds