Wall clock time and date at job start Tue Mar 31 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43204 * 119.99950 * 98.91668 * 3 2 1 5 5 N 3.51041 * 140.68919 * 98.90923 * 2 1 3 6 6 C 1.41088 * 119.99797 * 278.90803 * 3 2 1 7 7 C 1.38870 * 120.00166 * 5.26519 * 6 3 2 8 8 H 1.08002 * 119.99870 * 337.96525 * 7 6 3 9 9 C 1.40902 * 119.99687 * 157.95985 * 7 6 3 10 10 N 1.30302 * 120.00590 * 350.92209 * 9 7 6 11 11 Si 1.86807 * 119.99752 * 170.92137 * 9 7 6 12 12 H 1.48501 * 109.47305 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46883 * 120.00062 * 11 9 7 14 14 H 1.48498 * 109.47117 * 239.99916 * 11 9 7 15 15 N 1.38649 * 119.99774 * 185.26519 * 6 3 2 16 16 C 1.34777 * 120.00056 * 119.94542 * 15 6 3 17 17 S 1.71201 * 119.99946 * 354.95884 * 16 15 6 18 18 N 1.34773 * 120.00022 * 174.95246 * 16 15 6 19 19 C 1.46498 * 120.00221 * 180.02562 * 18 16 15 20 20 C 1.54276 * 110.02981 * 272.63435 * 19 18 16 21 21 C 1.54968 * 104.15530 * 217.13459 * 20 19 18 22 22 C 1.54879 * 102.78061 * 37.88757 * 21 20 19 23 23 C 1.53870 * 110.03781 * 155.41498 * 19 18 16 24 24 H 0.97001 * 120.00452 * 185.04106 * 10 9 7 25 25 H 0.97002 * 119.99941 * 299.95329 * 15 6 3 26 26 H 0.97001 * 120.00197 * 359.72967 * 18 16 15 27 27 H 1.09006 * 110.01800 * 34.01988 * 19 18 16 28 28 H 1.08999 * 110.48016 * 335.77797 * 20 19 18 29 29 H 1.08995 * 110.48655 * 98.42303 * 20 19 18 30 30 H 1.09002 * 110.71871 * 279.56810 * 21 20 19 31 31 H 1.09006 * 110.91930 * 156.29748 * 21 20 19 32 32 H 1.09000 * 110.48862 * 203.40573 * 22 21 20 33 33 H 1.09006 * 110.60213 * 80.81248 * 22 21 20 34 34 H 1.08993 * 110.03355 * 238.57130 * 23 19 18 35 35 H 1.09003 * 110.02936 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2840 0.1932 -1.2252 5 7 3.8521 0.3444 -2.1971 6 6 3.2736 -0.1883 1.2071 7 6 2.5837 -0.4834 2.3757 8 1 1.5382 -0.2279 2.4647 9 6 3.2479 -1.1164 3.4450 10 7 4.4528 -1.5837 3.2787 11 14 2.4010 -1.2857 5.1015 12 1 1.0478 -0.6782 5.0300 13 1 2.2794 -2.7240 5.4505 14 1 3.2022 -0.5902 6.1405 15 7 4.6556 -0.0792 1.2267 16 6 5.2476 0.8451 2.0089 17 16 4.2929 1.9687 2.8788 18 7 6.5913 0.8846 2.1063 19 6 7.2348 1.8888 2.9569 20 6 7.4615 3.1899 2.1594 21 6 8.8280 3.7136 2.6691 22 6 9.6471 2.4120 2.8523 23 6 8.6237 1.3946 3.3977 24 1 4.8819 -2.0834 3.9908 25 1 5.1964 -0.6680 0.6774 26 1 7.1321 0.2454 1.6165 27 1 6.6153 2.0898 3.8310 28 1 7.5083 2.9791 1.0910 29 1 6.6721 3.9106 2.3728 30 1 8.7114 4.2337 3.6199 31 1 9.2960 4.3638 1.9298 32 1 10.4522 2.5657 3.5709 33 1 10.0490 2.0741 1.8970 34 1 8.6785 1.3564 4.4855 35 1 8.8188 0.4072 2.9790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198571505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:19 Heat of formation + Delta-G solvation = 49.513795 kcal Electronic energy + Delta-G solvation = -20323.156868 eV Core-core repulsion = 17253.246082 eV Total energy + Delta-G solvation = -3069.910786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 14.40 seconds Orbital eigenvalues (eV) -40.72771 -39.34058 -37.37910 -36.58558 -36.21499 -34.76278 -32.11769 -29.64054 -28.88280 -28.44364 -24.96545 -23.45981 -21.76209 -21.52905 -20.71665 -19.62286 -19.04465 -17.93062 -17.68151 -16.74524 -16.26079 -16.07455 -15.57757 -15.14587 -14.64245 -14.46804 -14.24971 -14.20095 -13.95444 -13.54205 -13.41010 -13.32135 -13.16809 -12.87150 -12.76380 -12.61613 -12.31235 -12.03444 -12.01318 -11.96874 -11.90509 -11.67660 -11.58574 -11.43626 -10.43708 -9.65179 -9.19946 -8.64940 -8.26945 -7.01198 0.20379 0.95036 1.19808 1.35895 1.48395 1.53365 1.81783 2.02808 2.09994 2.20596 2.44453 2.64515 2.84930 3.40369 3.63001 3.73586 3.80725 4.03541 4.47051 4.51906 4.56356 4.58962 4.64199 4.65234 4.81207 4.91742 5.08873 5.11275 5.19467 5.25992 5.34804 5.39498 5.48510 5.63582 5.85406 6.01732 6.15619 6.50644 6.60812 7.13036 7.32806 7.61869 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.006590 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.283178 B = 4247.556433 C = 5507.663670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.330 3.670 3 C -0.320 4.320 4 C 0.314 3.686 5 N -0.552 5.552 6 C 0.359 3.641 7 C -0.310 4.310 8 H 0.102 0.898 9 C 0.060 3.940 10 N -0.728 5.728 11 Si 0.978 3.022 12 H -0.263 1.263 13 H -0.245 1.245 14 H -0.262 1.262 15 N -0.599 5.599 16 C 0.616 3.384 17 S -0.724 6.724 18 N -0.663 5.663 19 C 0.142 3.858 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.123 4.123 24 H 0.317 0.683 25 H 0.406 0.594 26 H 0.409 0.591 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.383 -0.923 8.306 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.239 5.239 2 C 0.023 3.977 3 C -0.339 4.339 4 C 0.009 3.991 5 N -0.236 5.236 6 C 0.257 3.743 7 C -0.336 4.336 8 H 0.120 0.880 9 C -0.171 4.171 10 N -0.346 5.346 11 Si 0.797 3.203 12 H -0.187 1.187 13 H -0.169 1.169 14 H -0.186 1.186 15 N -0.221 5.221 16 C 0.254 3.746 17 S -0.600 6.600 18 N -0.292 5.292 19 C 0.038 3.962 20 C -0.168 4.168 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.161 4.161 24 H 0.129 0.871 25 H 0.245 0.755 26 H 0.247 0.753 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.142 0.012 7.539 16.915 hybrid contribution 0.425 -1.120 -0.137 1.206 sum 15.568 -1.108 7.402 17.274 Atomic orbital electron populations 1.81033 1.12718 1.20586 1.09565 1.24780 0.91468 0.89880 0.91543 1.12663 0.82712 1.51210 0.87334 1.25218 0.92302 0.89846 0.91767 1.81053 1.10416 1.21032 1.11097 1.16341 0.78783 0.88146 0.91057 1.20309 0.98646 1.19254 0.95419 0.87961 1.26902 0.94905 0.91724 1.03586 1.69282 1.11151 1.17372 1.36816 0.85113 0.79785 0.79783 0.75576 1.18653 1.16909 1.18641 1.41404 1.06548 1.32906 1.41256 1.21442 0.86294 0.84766 0.82093 1.93267 1.65704 1.42959 1.58068 1.45129 1.01998 1.35077 1.47045 1.22130 0.94225 0.86550 0.93312 1.22688 0.98541 0.96435 0.99185 1.22470 0.93699 0.97786 1.01641 1.22341 0.97289 0.93949 1.01794 1.22422 0.91428 1.00047 1.02204 0.87084 0.75472 0.75253 0.89141 0.92312 0.92491 0.90844 0.90536 0.89683 0.90921 0.89761 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.62 18.54 19.01 0.35 -27.27 16 2 C 0.33 15.81 13.91 88.33 1.23 17.04 16 3 C -0.32 -14.37 5.88 -20.08 -0.12 -14.49 16 4 C 0.31 14.13 14.80 88.33 1.31 15.44 16 5 N -0.55 -25.35 18.54 19.00 0.35 -25.00 16 6 C 0.36 15.07 5.10 38.92 0.20 15.26 16 7 C -0.31 -13.15 7.09 23.07 0.16 -12.99 16 8 H 0.10 4.66 7.03 -2.91 -0.02 4.64 16 9 C 0.06 2.23 4.64 85.57 0.40 2.63 16 10 N -0.73 -24.72 11.06 21.99 0.24 -24.48 16 11 Si 0.98 31.43 29.58 68.60 2.03 33.46 16 12 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 13 H -0.25 -7.03 7.11 99.48 0.71 -6.33 16 14 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 15 N -0.60 -21.44 3.22 -189.23 -0.61 -22.05 16 16 C 0.62 21.73 6.47 179.06 1.16 22.89 16 17 S -0.72 -31.85 25.88 -56.49 -1.46 -33.31 16 18 N -0.66 -17.23 5.05 -326.12 -1.65 -18.87 16 19 C 0.14 3.37 2.96 45.72 0.14 3.50 16 20 C -0.13 -3.05 6.53 31.70 0.21 -2.84 16 21 C -0.12 -1.94 6.91 31.91 0.22 -1.72 16 22 C -0.12 -1.50 6.83 31.67 0.22 -1.29 16 23 C -0.12 -1.92 6.57 31.32 0.21 -1.71 16 24 H 0.32 9.42 8.29 -92.71 -0.77 8.65 16 25 H 0.41 12.67 8.82 -92.71 -0.82 11.85 16 26 H 0.41 8.20 8.33 -92.71 -0.77 7.42 16 27 H 0.09 2.71 6.81 -2.38 -0.02 2.69 16 28 H 0.06 1.45 8.05 -2.39 -0.02 1.44 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.10 7.61 -2.39 -0.02 1.08 16 Total: -1.00 -58.09 324.65 4.15 -53.94 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.43 Total: 21.86 kcal Atomic # 6 Polarization: 36.40 SS G_CDS: 5.32 Total: 41.72 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -1.31 Total: -117.68 kcal Atomic # 14 Polarization: 31.43 SS G_CDS: 2.03 Total: 33.46 kcal Atomic # 16 Polarization: -31.85 SS G_CDS: -1.46 Total: -33.31 kcal Total: -58.09 4.15 -53.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198571505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.451 kcal (2) G-P(sol) polarization free energy of solvation -58.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.40 seconds