Wall clock time and date at job start Tue Mar 31 2020 08:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86795 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47083 * 275.40873 * 3 2 1 5 5 H 1.48495 * 109.47005 * 35.41063 * 3 2 1 6 6 H 1.48500 * 109.47203 * 155.40839 * 3 2 1 7 7 C 1.39985 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99612 * 342.06781 * 7 2 1 9 9 C 1.40980 * 120.00347 * 161.79071 * 7 2 1 10 10 C 1.40959 * 120.10604 * 329.89733 * 9 7 2 11 11 C 1.36212 * 119.87514 * 179.78130 * 10 9 7 12 12 C 1.40011 * 120.11861 * 0.49808 * 11 10 9 13 13 C 1.47847 * 119.88568 * 179.71308 * 12 11 10 14 14 C 1.40662 * 119.74655 * 179.75059 * 13 12 11 15 15 C 1.35672 * 120.82761 * 179.73161 * 14 13 12 16 16 C 1.40814 * 120.03478 * 0.52086 * 15 14 13 17 17 C 1.40332 * 120.95741 * 179.73903 * 16 15 14 18 18 C 1.37701 * 119.58489 * 180.02562 * 17 16 15 19 19 O 1.35845 * 119.62937 * 179.97438 * 18 17 16 20 20 C 1.39868 * 120.73463 * 359.97438 * 18 17 16 21 21 C 1.35941 * 120.89415 * 0.02953 * 20 18 17 22 22 C 1.40734 * 119.88356 * 359.95185 * 21 20 18 23 23 C 1.38630 * 119.74848 * 0.02562 * 13 12 11 24 24 C 1.40006 * 120.22430 * 359.73750 * 12 11 10 25 25 C 1.36202 * 120.11678 * 0.02562 * 24 12 11 26 26 H 0.96998 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.06266 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.93655 * 180.22939 * 11 10 9 29 29 H 1.08004 * 119.58748 * 359.97438 * 14 13 12 30 30 H 1.08004 * 119.98059 * 180.25622 * 15 14 13 31 31 H 1.08001 * 120.20530 * 0.04354 * 17 16 15 32 32 H 0.96699 * 114.00018 * 89.99956 * 19 18 17 33 33 H 1.08000 * 119.55131 * 180.02562 * 20 18 17 34 34 H 1.08004 * 120.05641 * 180.02562 * 21 20 18 35 35 H 1.07996 * 120.26012 * 359.97438 * 23 13 12 36 36 H 1.07999 * 119.94417 * 180.02562 * 24 12 11 37 37 H 1.08000 * 120.05727 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3753 2.1123 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4098 0.5826 7 6 2.0080 -1.2123 -0.0005 8 1 1.5073 -2.1250 0.2871 9 6 3.3649 -1.2428 -0.3821 10 6 3.8570 -0.3116 -1.3188 11 6 5.1698 -0.3424 -1.6807 12 6 6.0275 -1.3035 -1.1319 13 6 7.4501 -1.3363 -1.5332 14 6 8.3103 -2.2997 -0.9760 15 6 9.6183 -2.3532 -1.3326 16 6 10.1334 -1.4303 -2.2631 17 6 11.4843 -1.4645 -2.6416 18 6 11.9582 -0.5481 -3.5535 19 8 13.2659 -0.5801 -3.9202 20 6 11.1082 0.4153 -4.1065 21 6 9.7956 0.4709 -3.7574 22 6 9.2774 -0.4506 -2.8285 23 6 7.9273 -0.4138 -2.4514 24 6 5.5424 -2.2337 -0.2049 25 6 4.2325 -2.2083 0.1673 26 1 -0.4850 0.8400 0.0004 27 1 3.1954 0.4275 -1.7458 28 1 5.5488 0.3730 -2.3956 29 1 7.9239 -3.0083 -0.2583 30 1 10.2656 -3.1013 -0.8993 31 1 12.1480 -2.2052 -2.2204 32 1 13.4461 -1.1428 -4.6856 33 1 11.5001 1.1246 -4.8205 34 1 9.1513 1.2202 -4.1932 35 1 7.2642 0.3268 -2.8736 36 1 6.2080 -2.9728 0.2159 37 1 3.8592 -2.9267 0.8822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205737944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:56 Heat of formation + Delta-G solvation = 9.018941 kcal Electronic energy + Delta-G solvation = -20817.348348 eV Core-core repulsion = 17681.485214 eV Total energy + Delta-G solvation = -3135.863134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25755 -38.50976 -37.54537 -35.25075 -33.82190 -32.56187 -30.91414 -30.24725 -29.37271 -28.18356 -25.15425 -23.41236 -22.53871 -22.11571 -21.01916 -20.29302 -18.56047 -17.73326 -17.00896 -16.65508 -15.79633 -15.59201 -14.87070 -14.68508 -14.20326 -13.90192 -13.71249 -13.38995 -13.22310 -13.11236 -12.76548 -12.63944 -12.37625 -12.15996 -11.99902 -11.38474 -11.20505 -10.97677 -10.86165 -10.64404 -10.45917 -10.28395 -10.05635 -9.80288 -9.63770 -9.29118 -8.51785 -7.99204 -7.93225 -7.20760 -7.09465 -4.64061 0.60574 1.07084 2.05537 2.46468 2.63807 2.95618 3.07797 3.16679 3.29586 3.81606 4.08810 4.24637 4.53711 4.72998 4.92382 5.16523 5.20895 5.29323 5.33090 5.41574 5.57251 5.60982 5.78646 5.90125 5.97382 6.06748 6.15708 6.31708 6.39716 6.43492 6.47622 6.60455 6.67808 6.72525 6.85843 6.93407 6.97514 7.17866 7.30074 7.51307 7.60390 7.66623 7.72454 7.92000 8.11318 8.44826 8.55666 9.79496 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.032884 B = 0.003357 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.265906 B = 8339.800374 C = 9012.349888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.425 4.425 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.243 4.243 11 C -0.047 4.047 12 C -0.211 4.211 13 C 0.028 3.972 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.065 4.065 17 C -0.123 4.123 18 C 0.079 3.921 19 O -0.502 6.502 20 C -0.141 4.141 21 C -0.098 4.098 22 C -0.036 4.036 23 C -0.152 4.152 24 C -0.055 4.055 25 C -0.213 4.213 26 H 0.290 0.710 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.384 0.616 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.956 -0.544 -5.506 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.452 4.452 8 H 0.113 0.887 9 C 0.095 3.905 10 C -0.262 4.262 11 C -0.065 4.065 12 C -0.212 4.212 13 C 0.028 3.972 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.066 4.066 17 C -0.142 4.142 18 C 0.035 3.965 19 O -0.312 6.312 20 C -0.159 4.159 21 C -0.116 4.116 22 C -0.036 4.036 23 C -0.170 4.170 24 C -0.073 4.073 25 C -0.232 4.232 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.706 -0.072 -5.001 16.483 hybrid contribution 0.090 0.419 -0.440 0.614 sum 15.796 0.347 -5.441 16.710 Atomic orbital electron populations 1.69679 1.08294 1.30938 1.32387 1.26324 0.94815 1.02270 0.90681 0.86225 0.81405 0.79089 0.79153 1.19313 1.21521 1.16430 1.19661 0.93231 0.96199 1.36126 0.88696 1.17834 0.92870 0.90783 0.89023 1.20732 0.95721 1.05254 1.04496 1.20477 0.93291 0.95837 0.96894 1.18055 0.91199 1.03796 1.08128 1.18938 0.93103 0.92465 0.92738 1.21017 0.93223 0.98829 1.00109 1.20826 0.95721 0.98509 0.97491 1.17826 0.92768 0.97085 0.98889 1.21424 0.94566 0.98896 0.99276 1.18311 0.83310 0.96532 0.98386 1.84824 1.22406 1.71461 1.52459 1.20983 0.93676 0.99788 1.01493 1.20922 0.94999 0.98415 0.97225 1.18019 0.93798 0.95177 0.96590 1.21240 0.93740 1.01211 1.00833 1.20512 0.95314 0.96182 0.95341 1.20718 0.93184 1.04274 1.05017 0.89924 0.87990 0.88370 0.85779 0.86070 0.85569 0.76147 0.85935 0.85503 0.85678 0.88291 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 13.93 55.55 0.77 -19.07 16 2 C 0.08 1.99 5.40 -17.33 -0.09 1.90 16 3 Si 0.92 19.78 24.52 -169.99 -4.17 15.61 16 4 H -0.27 -5.59 6.70 56.52 0.38 -5.21 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.24 -5.40 6.87 56.52 0.39 -5.01 16 7 C -0.43 -10.84 9.54 -37.89 -0.36 -11.20 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.10 2.37 5.10 -106.80 -0.54 1.82 16 10 C -0.24 -5.59 7.10 -39.28 -0.28 -5.87 16 11 C -0.05 -0.98 9.34 -39.65 -0.37 -1.35 16 12 C -0.21 -4.25 5.90 -104.64 -0.62 -4.87 16 13 C 0.03 0.49 5.87 -104.91 -0.62 -0.12 16 14 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 15 C -0.11 -1.51 9.73 -39.53 -0.38 -1.89 16 16 C -0.07 -0.96 5.75 -106.75 -0.61 -1.57 16 17 C -0.12 -1.58 9.72 -38.99 -0.38 -1.96 16 18 C 0.08 0.98 6.69 -39.17 -0.26 0.71 16 19 O -0.50 -5.32 13.48 -19.26 -0.26 -5.58 16 20 C -0.14 -1.71 9.88 -39.80 -0.39 -2.10 16 21 C -0.10 -1.28 9.74 -39.46 -0.38 -1.67 16 22 C -0.04 -0.55 5.74 -106.82 -0.61 -1.16 16 23 C -0.15 -2.53 9.17 -38.69 -0.35 -2.88 16 24 C -0.06 -1.11 9.35 -39.65 -0.37 -1.48 16 25 C -0.21 -4.69 9.73 -39.29 -0.38 -5.07 16 26 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 27 H 0.10 2.32 4.75 -52.49 -0.25 2.07 16 28 H 0.10 1.81 6.14 -52.48 -0.32 1.49 16 29 H 0.12 1.75 6.12 -52.48 -0.32 1.43 16 30 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.38 2.15 9.06 45.56 0.41 2.56 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.13 1.95 6.13 -52.49 -0.32 1.63 16 36 H 0.10 1.69 6.13 -52.49 -0.32 1.36 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -27.69 310.66 -9.19 -36.88 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.83 Total: 8.39 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: -7.39 Total: -40.92 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.77 Total: -19.07 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.26 Total: -5.58 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.17 Total: 15.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.69 -9.19 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205737944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.902 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds