Wall clock time and date at job start Tue Mar 31 2020 08:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86795 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47083 * 275.40873 * 3 2 1 5 5 H 1.48495 * 109.47005 * 35.41063 * 3 2 1 6 6 H 1.48500 * 109.47203 * 155.40839 * 3 2 1 7 7 C 1.39985 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99612 * 342.06781 * 7 2 1 9 9 C 1.40980 * 120.00347 * 161.79071 * 7 2 1 10 10 C 1.40959 * 120.10604 * 329.89733 * 9 7 2 11 11 C 1.36212 * 119.87514 * 179.78130 * 10 9 7 12 12 C 1.40011 * 120.11861 * 0.49808 * 11 10 9 13 13 C 1.47847 * 119.88568 * 179.71308 * 12 11 10 14 14 C 1.40662 * 119.74655 * 179.75059 * 13 12 11 15 15 C 1.35672 * 120.82761 * 179.73161 * 14 13 12 16 16 C 1.40814 * 120.03478 * 0.52086 * 15 14 13 17 17 C 1.40332 * 120.95741 * 179.73903 * 16 15 14 18 18 C 1.37701 * 119.58489 * 180.02562 * 17 16 15 19 19 O 1.35845 * 119.62937 * 179.97438 * 18 17 16 20 20 C 1.39868 * 120.73463 * 359.97438 * 18 17 16 21 21 C 1.35941 * 120.89415 * 0.02953 * 20 18 17 22 22 C 1.40734 * 119.88356 * 359.95185 * 21 20 18 23 23 C 1.38630 * 119.74848 * 0.02562 * 13 12 11 24 24 C 1.40006 * 120.22430 * 359.73750 * 12 11 10 25 25 C 1.36202 * 120.11678 * 0.02562 * 24 12 11 26 26 H 0.96998 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.06266 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.93655 * 180.22939 * 11 10 9 29 29 H 1.08004 * 119.58748 * 359.97438 * 14 13 12 30 30 H 1.08004 * 119.98059 * 180.25622 * 15 14 13 31 31 H 1.08001 * 120.20530 * 0.04354 * 17 16 15 32 32 H 0.96699 * 114.00018 * 89.99956 * 19 18 17 33 33 H 1.08000 * 119.55131 * 180.02562 * 20 18 17 34 34 H 1.08004 * 120.05641 * 180.02562 * 21 20 18 35 35 H 1.07996 * 120.26012 * 359.97438 * 23 13 12 36 36 H 1.07999 * 119.94417 * 180.02562 * 24 12 11 37 37 H 1.08000 * 120.05727 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3753 2.1123 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4098 0.5826 7 6 2.0080 -1.2123 -0.0005 8 1 1.5073 -2.1250 0.2871 9 6 3.3649 -1.2428 -0.3821 10 6 3.8570 -0.3116 -1.3188 11 6 5.1698 -0.3424 -1.6807 12 6 6.0275 -1.3035 -1.1319 13 6 7.4501 -1.3363 -1.5332 14 6 8.3103 -2.2997 -0.9760 15 6 9.6183 -2.3532 -1.3326 16 6 10.1334 -1.4303 -2.2631 17 6 11.4843 -1.4645 -2.6416 18 6 11.9582 -0.5481 -3.5535 19 8 13.2659 -0.5801 -3.9202 20 6 11.1082 0.4153 -4.1065 21 6 9.7956 0.4709 -3.7574 22 6 9.2774 -0.4506 -2.8285 23 6 7.9273 -0.4138 -2.4514 24 6 5.5424 -2.2337 -0.2049 25 6 4.2325 -2.2083 0.1673 26 1 -0.4850 0.8400 0.0004 27 1 3.1954 0.4275 -1.7458 28 1 5.5488 0.3730 -2.3956 29 1 7.9239 -3.0083 -0.2583 30 1 10.2656 -3.1013 -0.8993 31 1 12.1480 -2.2052 -2.2204 32 1 13.4461 -1.1428 -4.6856 33 1 11.5001 1.1246 -4.8205 34 1 9.1513 1.2202 -4.1932 35 1 7.2642 0.3268 -2.8736 36 1 6.2080 -2.9728 0.2159 37 1 3.8592 -2.9267 0.8822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205737944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:52 Heat of formation + Delta-G solvation = -5.756760 kcal Electronic energy + Delta-G solvation = -20817.989070 eV Core-core repulsion = 17681.485214 eV Total energy + Delta-G solvation = -3136.503856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 8.69 seconds Orbital eigenvalues (eV) -41.35256 -39.91888 -38.74645 -36.44989 -35.42441 -33.80227 -32.37621 -31.81680 -30.58367 -29.49376 -26.69545 -24.61784 -23.89641 -23.32669 -22.43386 -21.79593 -19.65642 -19.37697 -18.29509 -17.78572 -17.16800 -16.83885 -16.09175 -15.97039 -15.60605 -15.35118 -15.06022 -14.71321 -14.48560 -14.38820 -14.22605 -14.02611 -13.78493 -13.68874 -13.21186 -12.85049 -12.70380 -12.45572 -12.21082 -12.02163 -11.81608 -11.70233 -11.48668 -11.29017 -11.00902 -10.85096 -9.83924 -9.65425 -9.16346 -8.99402 -8.47836 -6.49224 -0.50533 -0.06456 0.69457 0.90867 1.17061 1.25856 1.39786 1.46611 2.01544 2.08923 2.61065 3.15347 3.33578 3.56980 3.70100 3.93139 3.93660 4.14441 4.18663 4.28616 4.35088 4.43678 4.45353 4.49781 4.72162 4.87492 4.90591 4.96640 5.02555 5.09861 5.22924 5.28686 5.34262 5.44508 5.52982 5.55742 5.63457 5.79649 5.85463 5.87491 6.09063 6.11931 6.17691 6.32835 6.66470 6.76793 6.89790 8.07909 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.032884 B = 0.003357 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.265906 B = 8339.800374 C = 9012.349888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.049 3.951 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.062 0.938 9 C 0.079 3.921 10 C -0.253 4.253 11 C -0.062 4.062 12 C -0.188 4.188 13 C -0.009 4.009 14 C -0.124 4.124 15 C -0.102 4.102 16 C -0.069 4.069 17 C -0.135 4.135 18 C 0.092 3.908 19 O -0.508 6.508 20 C -0.141 4.141 21 C -0.101 4.101 22 C -0.061 4.061 23 C -0.143 4.143 24 C -0.060 4.060 25 C -0.224 4.224 26 H 0.297 0.703 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.409 0.591 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.065 -0.041 -7.006 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.076 3.924 10 C -0.272 4.272 11 C -0.080 4.080 12 C -0.189 4.189 13 C -0.009 4.009 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.070 4.070 17 C -0.153 4.153 18 C 0.048 3.952 19 O -0.321 6.321 20 C -0.159 4.159 21 C -0.119 4.119 22 C -0.061 4.061 23 C -0.161 4.161 24 C -0.078 4.078 25 C -0.243 4.243 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.142 0.858 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.268 0.732 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.833 0.415 -6.525 21.835 hybrid contribution -0.770 0.173 -0.222 0.819 sum 20.063 0.588 -6.746 21.175 Atomic orbital electron populations 1.69702 1.09180 1.31850 1.35493 1.26874 0.95334 1.04289 0.90221 0.85488 0.79580 0.76478 0.79659 1.18118 1.20135 1.17891 1.19549 0.94515 0.95761 1.40283 0.91969 1.17988 0.92664 0.92025 0.89718 1.20831 0.96742 1.05183 1.04462 1.20792 0.92674 0.96881 0.97625 1.18499 0.92616 1.01917 1.05848 1.18926 0.92050 0.94865 0.95084 1.21139 0.93757 0.98700 1.00547 1.21160 0.95421 0.98649 0.96701 1.18143 0.93627 0.96687 0.98498 1.21637 0.94109 0.99874 0.99714 1.18482 0.83846 0.95620 0.97291 1.84761 1.21141 1.72278 1.53919 1.21301 0.93249 0.99922 1.01425 1.21155 0.95855 0.98278 0.96642 1.18236 0.93448 0.96544 0.97917 1.21432 0.94617 1.00362 0.99667 1.20853 0.94843 0.96883 0.95180 1.20935 0.94053 1.04074 1.05231 0.89230 0.88274 0.85841 0.84600 0.82917 0.83441 0.73181 0.83542 0.83781 0.85247 0.84951 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.78 13.93 21.83 0.30 -44.47 16 2 C 0.05 2.58 5.40 85.27 0.46 3.04 16 3 Si 0.96 42.11 24.52 68.60 1.68 43.79 16 4 H -0.26 -10.53 6.70 99.48 0.67 -9.86 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -11.53 6.87 99.48 0.68 -10.84 16 7 C -0.47 -25.99 9.54 23.37 0.22 -25.76 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 C 0.08 3.97 5.10 -21.28 -0.11 3.86 16 10 C -0.25 -11.85 7.10 22.46 0.16 -11.69 16 11 C -0.06 -2.55 9.34 22.23 0.21 -2.34 16 12 C -0.19 -7.32 5.90 -19.88 -0.12 -7.44 16 13 C -0.01 -0.31 5.87 -20.05 -0.12 -0.42 16 14 C -0.12 -3.48 9.32 22.27 0.21 -3.28 16 15 C -0.10 -2.45 9.73 22.31 0.22 -2.24 16 16 C -0.07 -1.77 5.75 -21.25 -0.12 -1.89 16 17 C -0.14 -2.86 9.72 22.65 0.22 -2.64 16 18 C 0.09 1.85 6.69 22.54 0.15 2.00 16 19 O -0.51 -8.22 13.48 -91.81 -1.24 -9.46 16 20 C -0.14 -2.77 9.88 22.13 0.22 -2.55 16 21 C -0.10 -2.28 9.74 22.35 0.22 -2.06 16 22 C -0.06 -1.68 5.74 -21.29 -0.12 -1.80 16 23 C -0.14 -4.37 9.17 22.85 0.21 -4.16 16 24 C -0.06 -2.34 9.35 22.22 0.21 -2.13 16 25 C -0.22 -10.10 9.73 22.46 0.22 -9.88 16 26 H 0.30 14.19 8.30 -92.71 -0.77 13.42 16 27 H 0.10 4.61 4.75 -2.91 -0.01 4.60 16 28 H 0.12 4.34 6.14 -2.91 -0.02 4.33 16 29 H 0.14 3.39 6.12 -2.91 -0.02 3.37 16 30 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.41 2.47 9.06 -74.06 -0.67 1.80 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.13 3.72 6.13 -2.91 -0.02 3.70 16 36 H 0.13 4.21 6.13 -2.91 -0.02 4.19 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -62.74 310.66 3.47 -59.27 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.39 Total: 22.26 kcal Atomic # 6 Polarization: -73.72 SS G_CDS: 2.33 Total: -71.39 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.30 Total: -44.47 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.24 Total: -9.46 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.68 Total: 43.79 kcal Total: -62.74 3.47 -59.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205737944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.517 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.69 seconds