Wall clock time and date at job start Tue Mar 31 2020 08:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86808 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47080 * 275.41908 * 3 2 1 5 5 H 1.48501 * 109.46724 * 35.41625 * 3 2 1 6 6 H 1.48494 * 109.46781 * 155.41573 * 3 2 1 7 7 C 1.39929 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99659 * 341.73412 * 7 2 1 9 9 C 1.41426 * 119.99957 * 161.73196 * 7 2 1 10 10 C 1.40794 * 120.18680 * 330.17303 * 9 7 2 11 11 C 1.37686 * 119.99522 * 180.02562 * 10 9 7 12 12 C 1.38424 * 120.38280 * 0.02562 * 11 10 9 13 13 C 1.39721 * 120.37117 * 359.72734 * 12 11 10 14 14 C 1.48370 * 119.99880 * 180.29919 * 13 12 11 15 15 C 1.40426 * 119.71244 * 179.97438 * 14 13 12 16 16 C 1.35799 * 120.86143 * 179.75020 * 15 14 13 17 17 C 1.40693 * 119.97784 * 0.51862 * 16 15 14 18 18 C 1.40422 * 121.01717 * 179.71871 * 17 16 15 19 19 C 1.36601 * 119.67351 * 180.02562 * 18 17 16 20 20 O 1.35878 * 119.56194 * 180.02562 * 19 18 17 21 21 C 1.39847 * 120.88116 * 0.02562 * 19 18 17 22 22 C 1.35971 * 120.90361 * 359.97438 * 21 19 18 23 23 C 1.40681 * 119.74385 * 0.02562 * 22 21 19 24 24 C 1.38214 * 119.71093 * 0.24961 * 14 13 12 25 25 C 1.38793 * 119.99681 * 0.55163 * 13 12 11 26 26 H 0.97001 * 120.00132 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00343 * 0.05013 * 10 9 7 28 28 H 1.08002 * 119.80657 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.81198 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.56938 * 0.02562 * 15 14 13 31 31 H 1.07996 * 120.01038 * 180.28133 * 16 15 14 32 32 H 1.07992 * 120.16432 * 0.05086 * 18 17 16 33 33 H 0.96701 * 114.00257 * 269.98281 * 20 19 18 34 34 H 1.08001 * 119.55029 * 179.97438 * 21 19 18 35 35 H 1.08000 * 120.12779 * 180.02562 * 22 21 19 36 36 H 1.07998 * 120.25943 * 0.02562 * 24 14 13 37 37 H 1.08001 * 120.18357 * 179.72732 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1236 0.2922 9 6 3.3688 -1.2424 -0.3845 10 6 3.8626 -0.3098 -1.3165 11 6 5.1880 -0.3436 -1.6879 12 6 6.0418 -1.2913 -1.1503 13 6 5.5696 -2.2210 -0.2203 14 6 6.4935 -3.2290 0.3557 15 6 6.0126 -4.1601 1.2903 16 6 6.8365 -5.0960 1.8284 17 6 8.1935 -5.1339 1.4588 18 6 9.0661 -6.0884 2.0060 19 6 10.3787 -6.1000 1.6281 20 8 11.2209 -7.0250 2.1586 21 6 10.8673 -5.1727 0.7024 22 6 10.0487 -4.2357 0.1540 23 6 8.6911 -4.1945 0.5204 24 6 7.8212 -3.2396 -0.0281 25 6 4.2351 -2.2048 0.1608 26 1 -0.4850 0.8400 0.0004 27 1 3.2018 0.4322 -1.7399 28 1 5.5636 0.3735 -2.4028 29 1 7.0798 -1.3091 -1.4478 30 1 4.9730 -4.1345 1.5817 31 1 6.4511 -5.8084 2.5427 32 1 8.7011 -6.8100 2.7219 33 1 11.6596 -6.7374 2.9710 34 1 11.9091 -5.2011 0.4191 35 1 10.4392 -3.5258 -0.5601 36 1 8.1867 -2.5179 -0.7437 37 1 3.8659 -2.9248 0.8761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205763129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:50 Heat of formation + Delta-G solvation = 11.000890 kcal Electronic energy + Delta-G solvation = -20843.575014 eV Core-core repulsion = 17707.797824 eV Total energy + Delta-G solvation = -3135.777190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43515 -38.56157 -37.52584 -35.30185 -33.70704 -32.65437 -30.80777 -30.52750 -29.39337 -27.63933 -25.27442 -23.49153 -23.09959 -22.04305 -20.88935 -20.25551 -18.70892 -17.60378 -16.92646 -16.46858 -15.87727 -15.73361 -15.03206 -14.53347 -14.38555 -14.07704 -13.64705 -13.42310 -13.29987 -13.26702 -12.77956 -12.57990 -12.34558 -12.11532 -11.75630 -11.38474 -11.31549 -11.09311 -10.77143 -10.66775 -10.47753 -10.36671 -9.88250 -9.84272 -9.61544 -9.23055 -8.63316 -8.03289 -7.76553 -7.13153 -6.99743 -4.55447 0.50771 0.95109 1.99055 2.47008 2.54705 3.05976 3.16310 3.19688 3.30025 3.93542 4.02132 4.21161 4.54120 4.62662 4.83816 5.02079 5.10948 5.25063 5.29601 5.36416 5.45282 5.51651 5.73552 5.92504 5.97257 5.99291 6.12515 6.24472 6.27464 6.34933 6.43648 6.60055 6.63434 6.66735 6.74472 6.92644 7.03441 7.13708 7.32319 7.50362 7.51432 7.65410 7.77986 8.00260 8.28638 8.55993 8.73658 10.02644 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.035954 B = 0.003304 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.575911 B = 8472.767431 C = 9015.838690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.090 3.910 10 C -0.230 4.230 11 C -0.080 4.080 12 C -0.225 4.225 13 C -0.033 4.033 14 C -0.010 4.010 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.047 4.047 18 C -0.130 4.130 19 C 0.093 3.907 20 O -0.502 6.502 21 C -0.146 4.146 22 C -0.088 4.088 23 C -0.052 4.052 24 C -0.113 4.113 25 C -0.186 4.186 26 H 0.285 0.715 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.386 0.614 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.404 -6.363 3.528 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.109 0.891 9 C 0.087 3.913 10 C -0.249 4.249 11 C -0.099 4.099 12 C -0.244 4.244 13 C -0.033 4.033 14 C -0.010 4.010 15 C -0.114 4.114 16 C -0.132 4.132 17 C -0.048 4.048 18 C -0.148 4.148 19 C 0.049 3.951 20 O -0.312 6.312 21 C -0.164 4.164 22 C -0.106 4.106 23 C -0.052 4.052 24 C -0.131 4.131 25 C -0.205 4.205 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.241 0.759 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.933 -6.618 3.069 17.524 hybrid contribution 0.318 1.034 0.349 1.137 sum 16.251 -5.584 3.419 17.521 Atomic orbital electron populations 1.69696 1.08087 1.30295 1.35102 1.26142 0.94704 1.01719 0.90875 0.86328 0.81344 0.79824 0.78846 1.19629 1.21778 1.16729 1.19472 0.93095 0.96168 1.39015 0.89092 1.17660 0.93036 0.90853 0.89721 1.21145 0.95661 1.04555 1.03546 1.20544 0.93777 0.97193 0.98341 1.20439 0.98359 1.00828 1.04798 1.18427 0.92887 0.94700 0.97292 1.19101 0.93003 0.94356 0.94555 1.21133 1.00556 0.94043 0.95713 1.20886 0.92140 0.99411 1.00760 1.17899 0.93975 0.95609 0.97273 1.21218 0.93268 0.98964 1.01355 1.18083 0.89394 0.90771 0.96842 1.84832 1.60809 1.40707 1.44872 1.21024 1.00543 0.95629 0.99234 1.20946 0.92323 0.98177 0.99177 1.18064 0.93812 0.96173 0.97171 1.21364 0.92696 0.98444 1.00569 1.21153 0.91800 1.03680 1.03858 0.90410 0.88110 0.88551 0.88397 0.85014 0.85633 0.85289 0.75856 0.85716 0.85255 0.85083 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.24 13.93 55.55 0.77 -20.47 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.91 20.46 24.52 -169.99 -4.17 16.29 16 4 H -0.27 -5.89 6.70 56.52 0.38 -5.51 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.24 -5.63 6.86 56.52 0.39 -5.24 16 7 C -0.45 -11.88 9.57 -37.74 -0.36 -12.25 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.09 2.23 5.10 -106.87 -0.55 1.69 16 10 C -0.23 -5.42 7.17 -38.82 -0.28 -5.70 16 11 C -0.08 -1.69 10.01 -39.71 -0.40 -2.09 16 12 C -0.23 -4.51 9.42 -38.96 -0.37 -4.88 16 13 C -0.03 -0.68 5.87 -104.97 -0.62 -1.29 16 14 C -0.01 -0.18 5.87 -104.91 -0.62 -0.79 16 15 C -0.10 -1.54 9.32 -39.63 -0.37 -1.91 16 16 C -0.11 -1.58 9.73 -39.53 -0.38 -1.97 16 17 C -0.05 -0.66 5.74 -106.79 -0.61 -1.28 16 18 C -0.13 -1.58 9.67 -39.35 -0.38 -1.96 16 19 C 0.09 1.08 6.65 -39.57 -0.26 0.81 16 20 O -0.50 -4.95 13.47 -19.36 -0.26 -5.21 16 21 C -0.15 -1.62 9.88 -39.79 -0.39 -2.01 16 22 C -0.09 -1.06 9.76 -39.47 -0.39 -1.44 16 23 C -0.05 -0.75 5.74 -106.82 -0.61 -1.36 16 24 C -0.11 -1.77 9.17 -38.80 -0.36 -2.12 16 25 C -0.19 -4.18 9.16 -38.53 -0.35 -4.53 16 26 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 27 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.68 6.15 -52.49 -0.32 1.36 16 30 H 0.13 2.03 6.13 -52.49 -0.32 1.70 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.39 1.89 9.06 45.56 0.41 2.30 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.87 6.13 -52.49 -0.32 1.54 16 37 H 0.11 2.21 6.14 -52.49 -0.32 1.89 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -28.96 310.80 -9.19 -38.15 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -2.83 Total: 7.54 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: -7.39 Total: -40.99 kcal Atomic # 7 Polarization: -21.24 SS G_CDS: 0.77 Total: -20.47 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.26 Total: -5.21 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.96 -9.19 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205763129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.149 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds