Wall clock time and date at job start Tue Mar 31 2020 08:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86808 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47080 * 275.41908 * 3 2 1 5 5 H 1.48501 * 109.46724 * 35.41625 * 3 2 1 6 6 H 1.48494 * 109.46781 * 155.41573 * 3 2 1 7 7 C 1.39929 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99659 * 341.73412 * 7 2 1 9 9 C 1.41426 * 119.99957 * 161.73196 * 7 2 1 10 10 C 1.40794 * 120.18680 * 330.17303 * 9 7 2 11 11 C 1.37686 * 119.99522 * 180.02562 * 10 9 7 12 12 C 1.38424 * 120.38280 * 0.02562 * 11 10 9 13 13 C 1.39721 * 120.37117 * 359.72734 * 12 11 10 14 14 C 1.48370 * 119.99880 * 180.29919 * 13 12 11 15 15 C 1.40426 * 119.71244 * 179.97438 * 14 13 12 16 16 C 1.35799 * 120.86143 * 179.75020 * 15 14 13 17 17 C 1.40693 * 119.97784 * 0.51862 * 16 15 14 18 18 C 1.40422 * 121.01717 * 179.71871 * 17 16 15 19 19 C 1.36601 * 119.67351 * 180.02562 * 18 17 16 20 20 O 1.35878 * 119.56194 * 180.02562 * 19 18 17 21 21 C 1.39847 * 120.88116 * 0.02562 * 19 18 17 22 22 C 1.35971 * 120.90361 * 359.97438 * 21 19 18 23 23 C 1.40681 * 119.74385 * 0.02562 * 22 21 19 24 24 C 1.38214 * 119.71093 * 0.24961 * 14 13 12 25 25 C 1.38793 * 119.99681 * 0.55163 * 13 12 11 26 26 H 0.97001 * 120.00132 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00343 * 0.05013 * 10 9 7 28 28 H 1.08002 * 119.80657 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.81198 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.56938 * 0.02562 * 15 14 13 31 31 H 1.07996 * 120.01038 * 180.28133 * 16 15 14 32 32 H 1.07992 * 120.16432 * 0.05086 * 18 17 16 33 33 H 0.96701 * 114.00257 * 269.98281 * 20 19 18 34 34 H 1.08001 * 119.55029 * 179.97438 * 21 19 18 35 35 H 1.08000 * 120.12779 * 180.02562 * 22 21 19 36 36 H 1.07998 * 120.25943 * 0.02562 * 24 14 13 37 37 H 1.08001 * 120.18357 * 179.72732 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1236 0.2922 9 6 3.3688 -1.2424 -0.3845 10 6 3.8626 -0.3098 -1.3165 11 6 5.1880 -0.3436 -1.6879 12 6 6.0418 -1.2913 -1.1503 13 6 5.5696 -2.2210 -0.2203 14 6 6.4935 -3.2290 0.3557 15 6 6.0126 -4.1601 1.2903 16 6 6.8365 -5.0960 1.8284 17 6 8.1935 -5.1339 1.4588 18 6 9.0661 -6.0884 2.0060 19 6 10.3787 -6.1000 1.6281 20 8 11.2209 -7.0250 2.1586 21 6 10.8673 -5.1727 0.7024 22 6 10.0487 -4.2357 0.1540 23 6 8.6911 -4.1945 0.5204 24 6 7.8212 -3.2396 -0.0281 25 6 4.2351 -2.2048 0.1608 26 1 -0.4850 0.8400 0.0004 27 1 3.2018 0.4322 -1.7399 28 1 5.5636 0.3735 -2.4028 29 1 7.0798 -1.3091 -1.4478 30 1 4.9730 -4.1345 1.5817 31 1 6.4511 -5.8084 2.5427 32 1 8.7011 -6.8100 2.7219 33 1 11.6596 -6.7374 2.9710 34 1 11.9091 -5.2011 0.4191 35 1 10.4392 -3.5258 -0.5601 36 1 8.1867 -2.5179 -0.7437 37 1 3.8659 -2.9248 0.8761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205763129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:49 Heat of formation + Delta-G solvation = -5.050911 kcal Electronic energy + Delta-G solvation = -20844.271073 eV Core-core repulsion = 17707.797824 eV Total energy + Delta-G solvation = -3136.473248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46563 -39.89080 -38.76272 -36.42874 -35.42866 -33.86221 -32.26278 -32.08200 -30.52621 -28.92132 -27.05050 -24.66395 -24.31477 -23.15750 -22.31778 -21.86294 -19.78520 -19.10799 -18.11684 -17.82395 -17.22047 -16.88902 -16.45341 -15.73173 -15.65180 -15.53053 -14.97100 -14.73728 -14.53141 -14.44576 -14.32043 -13.96355 -13.70465 -13.50697 -13.24082 -12.84167 -12.77076 -12.39789 -12.34291 -12.05546 -11.81948 -11.64653 -11.47847 -11.24597 -11.07364 -10.91425 -9.88660 -9.55181 -9.18849 -8.90715 -8.47186 -6.52446 -0.55924 -0.13604 0.74870 0.79442 1.18957 1.25780 1.39955 1.47955 2.01151 2.12296 2.62785 3.10025 3.30781 3.56479 3.65399 3.77563 3.90221 4.12099 4.18748 4.30197 4.35779 4.37242 4.44892 4.55717 4.62353 4.86986 4.89123 4.93797 4.96641 5.09072 5.19791 5.27637 5.30244 5.43247 5.48448 5.56816 5.63679 5.79180 5.80746 5.89130 5.97967 6.03210 6.24216 6.38674 6.71752 6.81655 6.87803 8.18226 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.035954 B = 0.003304 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.575911 B = 8472.767431 C = 9015.838690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.048 3.952 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.488 4.488 8 H 0.055 0.945 9 C 0.072 3.928 10 C -0.248 4.248 11 C -0.083 4.083 12 C -0.213 4.213 13 C -0.028 4.028 14 C -0.048 4.048 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.144 4.144 19 C 0.106 3.894 20 O -0.509 6.509 21 C -0.143 4.143 22 C -0.088 4.088 23 C -0.072 4.072 24 C -0.100 4.100 25 C -0.207 4.207 26 H 0.293 0.707 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.411 0.589 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.286 -6.634 3.182 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.069 3.931 10 C -0.267 4.267 11 C -0.101 4.101 12 C -0.232 4.232 13 C -0.028 4.028 14 C -0.048 4.048 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.055 4.055 18 C -0.162 4.162 19 C 0.061 3.939 20 O -0.322 6.322 21 C -0.162 4.162 22 C -0.106 4.106 23 C -0.072 4.072 24 C -0.117 4.117 25 C -0.226 4.226 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.270 0.730 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.830 -6.895 2.735 22.111 hybrid contribution -0.733 0.798 0.505 1.195 sum 20.097 -6.097 3.240 21.250 Atomic orbital electron populations 1.69729 1.09160 1.31409 1.37560 1.26802 0.95313 1.04172 0.90350 0.85491 0.79549 0.76559 0.79538 1.18121 1.20437 1.17814 1.19448 0.94554 0.95619 1.42189 0.92689 1.17807 0.92602 0.92210 0.90458 1.21263 0.97116 1.04514 1.03837 1.20963 0.92683 0.97906 0.98505 1.20971 1.00032 0.99179 1.02982 1.18767 0.92406 0.95068 0.96539 1.19010 0.93633 0.95285 0.96875 1.21121 1.00626 0.95097 0.96612 1.21127 0.92173 0.98896 1.00463 1.18151 0.94130 0.95999 0.97182 1.21382 0.93538 0.99221 1.02092 1.18244 0.89406 0.90111 0.96110 1.84770 1.60581 1.40507 1.46353 1.21360 1.01788 0.94712 0.98293 1.21213 0.91144 0.98853 0.99388 1.18290 0.94960 0.96247 0.97741 1.21534 0.91787 0.98481 0.99906 1.21293 0.93000 1.03702 1.04578 0.89629 0.88442 0.84914 0.84621 0.85988 0.83302 0.83710 0.72966 0.83063 0.82773 0.83554 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.42 13.93 21.82 0.30 -47.12 16 2 C 0.05 2.60 5.40 85.25 0.46 3.06 16 3 Si 0.97 43.23 24.52 68.60 1.68 44.91 16 4 H -0.26 -10.74 6.70 99.48 0.67 -10.08 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.25 -11.66 6.86 99.48 0.68 -10.98 16 7 C -0.49 -27.88 9.57 23.46 0.22 -27.65 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 9 C 0.07 3.71 5.10 -21.32 -0.11 3.60 16 10 C -0.25 -11.74 7.17 22.76 0.16 -11.58 16 11 C -0.08 -3.29 10.01 22.18 0.22 -3.07 16 12 C -0.21 -8.00 9.42 22.67 0.21 -7.78 16 13 C -0.03 -1.13 5.87 -20.09 -0.12 -1.25 16 14 C -0.05 -1.66 5.87 -20.05 -0.12 -1.78 16 15 C -0.12 -3.75 9.32 22.24 0.21 -3.55 16 16 C -0.11 -2.90 9.73 22.30 0.22 -2.68 16 17 C -0.05 -1.40 5.74 -21.27 -0.12 -1.52 16 18 C -0.14 -3.04 9.67 22.42 0.22 -2.82 16 19 C 0.11 2.01 6.65 22.28 0.15 2.15 16 20 O -0.51 -7.78 13.47 -92.18 -1.24 -9.02 16 21 C -0.14 -2.51 9.88 22.13 0.22 -2.29 16 22 C -0.09 -1.73 9.76 22.34 0.22 -1.52 16 23 C -0.07 -1.86 5.74 -21.29 -0.12 -1.99 16 24 C -0.10 -2.86 9.17 22.77 0.21 -2.65 16 25 C -0.21 -9.71 9.16 22.95 0.21 -9.50 16 26 H 0.29 14.63 8.30 -92.71 -0.77 13.87 16 27 H 0.10 4.60 4.72 -2.91 -0.01 4.59 16 28 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 29 H 0.14 4.04 6.15 -2.91 -0.02 4.02 16 30 H 0.12 4.01 6.13 -2.91 -0.02 4.00 16 31 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.41 2.13 9.06 -74.06 -0.67 1.46 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.15 3.58 6.13 -2.91 -0.02 3.56 16 37 H 0.10 4.75 6.14 -2.91 -0.02 4.73 16 Total: -1.00 -66.11 310.80 3.47 -62.64 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.39 Total: 21.41 kcal Atomic # 6 Polarization: -75.16 SS G_CDS: 2.34 Total: -72.82 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.30 Total: -47.12 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -1.24 Total: -9.02 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.68 Total: 44.91 kcal Total: -66.11 3.47 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205763129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.588 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds