Wall clock time and date at job start Tue Mar 31 2020 08:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47101 * 240.00143 * 3 2 1 5 5 H 1.48502 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47441 * 120.00042 * 3 2 1 7 7 C 1.40044 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99840 * 163.95395 * 7 2 1 9 9 C 1.40823 * 120.00391 * 343.95542 * 7 2 1 10 10 C 1.40770 * 120.33741 * 333.31355 * 9 7 2 11 11 C 1.36399 * 119.99360 * 180.27878 * 10 9 7 12 12 C 1.38975 * 120.70167 * 359.74402 * 11 10 9 13 13 C 1.38017 * 120.68910 * 359.97438 * 12 11 10 14 14 C 1.39260 * 119.97026 * 0.02562 * 13 12 11 15 15 C 1.47743 * 120.33878 * 179.97438 * 14 13 12 16 16 C 1.40714 * 119.74950 * 130.01950 * 15 14 13 17 17 C 1.35657 * 120.82095 * 180.02562 * 16 15 14 18 18 C 1.40827 * 120.03966 * 359.91376 * 17 16 15 19 19 C 1.40326 * 120.93977 * 180.02562 * 18 17 16 20 20 C 1.37709 * 119.58282 * 180.29799 * 19 18 17 21 21 O 1.35845 * 119.62833 * 179.70172 * 20 19 18 22 22 C 1.39867 * 120.73191 * 359.48594 * 20 19 18 23 23 C 1.35943 * 120.89869 * 0.50142 * 22 20 19 24 24 C 1.40741 * 119.87862 * 359.76226 * 23 22 20 25 25 C 1.38676 * 119.75221 * 310.00394 * 15 14 13 26 26 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00402 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.64849 * 179.75853 * 11 10 9 29 29 H 1.08000 * 119.65451 * 180.02562 * 12 11 10 30 30 H 1.07992 * 120.01259 * 179.97438 * 13 12 11 31 31 H 1.07997 * 119.58851 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.97960 * 180.02562 * 17 16 15 33 33 H 1.07990 * 120.21071 * 0.02731 * 19 18 17 34 34 H 0.96702 * 114.00061 * 90.00678 * 21 20 19 35 35 H 1.08003 * 119.55119 * 180.23814 * 22 20 19 36 36 H 1.08000 * 120.06333 * 179.78846 * 23 22 20 37 37 H 1.07998 * 120.25954 * 359.97011 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0081 -1.2128 0.0005 8 1 3.0566 -1.2312 -0.2580 9 6 1.3451 -2.4085 0.3381 10 6 0.2192 -2.3832 1.1827 11 6 -0.4141 -3.5461 1.5097 12 6 0.0365 -4.7634 1.0132 13 6 1.1340 -4.8208 0.1783 14 6 1.8020 -3.6508 -0.1739 15 6 2.9781 -3.7028 -1.0666 16 6 3.0446 -2.8505 -2.1843 17 6 4.1139 -2.8804 -3.0185 18 6 5.1767 -3.7706 -2.7708 19 6 6.2921 -3.8170 -3.6211 20 6 7.3127 -4.7026 -3.3559 21 8 8.3901 -4.7525 -4.1818 22 6 7.2543 -5.5480 -2.2432 23 6 6.1859 -5.5235 -1.4031 24 6 5.1224 -4.6346 -1.6471 25 6 4.0083 -4.5910 -0.7966 26 1 -0.4850 0.8400 0.0004 27 1 -0.1406 -1.4435 1.5750 28 1 -1.2751 -3.5207 2.1613 29 1 -0.4781 -5.6739 1.2827 30 1 1.4750 -5.7727 -0.2009 31 1 2.2343 -2.1640 -2.3804 32 1 4.1510 -2.2199 -3.8722 33 1 6.3477 -3.1653 -4.4804 34 1 9.1066 -4.1539 -3.9302 35 1 8.0673 -6.2326 -2.0511 36 1 6.1533 -6.1847 -0.5497 37 1 3.9536 -5.2429 0.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205772910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:00 Heat of formation + Delta-G solvation = 7.139305 kcal Electronic energy + Delta-G solvation = -21418.378926 eV Core-core repulsion = 18282.434285 eV Total energy + Delta-G solvation = -3135.944641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.03529 -38.25115 -37.24522 -34.83830 -33.83658 -32.35832 -30.52887 -29.65590 -29.13174 -27.35590 -25.33084 -23.17353 -22.51893 -21.69869 -20.76132 -20.12946 -18.32698 -17.42809 -16.69576 -16.22358 -15.60713 -15.37693 -14.68627 -14.43604 -14.18024 -13.76466 -13.58073 -13.11207 -13.04028 -12.76755 -12.62643 -12.41874 -11.99452 -11.74614 -11.34758 -11.19865 -11.17129 -10.87444 -10.68968 -10.54639 -10.50180 -10.20018 -9.74073 -9.51249 -9.45967 -9.31444 -8.12153 -7.67908 -7.50859 -7.11315 -6.85905 -4.48239 0.86417 1.35624 2.38112 2.70626 2.85864 2.98753 3.01975 3.15641 3.40996 3.81985 4.28875 4.50071 4.59508 4.94536 5.11476 5.41667 5.45325 5.51352 5.63009 5.71677 5.87444 5.99306 6.06936 6.14129 6.28621 6.31075 6.42780 6.52294 6.57841 6.71671 6.74717 6.91005 7.02100 7.07454 7.09959 7.18824 7.34883 7.46655 7.51266 7.74554 7.80786 7.92453 7.99373 8.13899 8.47808 8.71882 8.81917 10.01483 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.005089 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.420987 B = 5500.419071 C = 6887.238050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.132 3.868 10 C -0.157 4.157 11 C -0.100 4.100 12 C -0.243 4.243 13 C -0.068 4.068 14 C -0.195 4.195 15 C 0.036 3.964 16 C -0.072 4.072 17 C -0.129 4.129 18 C -0.052 4.052 19 C -0.127 4.127 20 C 0.080 3.920 21 O -0.503 6.503 22 C -0.149 4.149 23 C -0.093 4.093 24 C -0.048 4.048 25 C -0.137 4.137 26 H 0.284 0.716 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.383 0.617 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -3.387 -3.111 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.129 3.871 10 C -0.177 4.177 11 C -0.119 4.119 12 C -0.262 4.262 13 C -0.087 4.087 14 C -0.197 4.197 15 C 0.035 3.965 16 C -0.090 4.090 17 C -0.147 4.147 18 C -0.052 4.052 19 C -0.145 4.145 20 C 0.036 3.964 21 O -0.312 6.312 22 C -0.167 4.167 23 C -0.111 4.111 24 C -0.048 4.048 25 C -0.155 4.155 26 H 0.095 0.905 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.237 0.763 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.453 -3.634 -3.427 9.819 hybrid contribution 0.562 1.142 0.233 1.294 sum 9.016 -2.492 -3.194 9.884 Atomic orbital electron populations 1.69786 1.07621 1.29706 1.33863 1.25949 0.94714 1.01375 0.92175 0.86393 0.80256 0.80110 0.80317 1.18723 1.20202 1.18671 1.19554 0.97755 0.90795 1.39753 0.89905 1.17515 0.90472 0.90953 0.88125 1.21051 0.99007 0.96983 1.00614 1.20500 0.98545 0.93394 0.99434 1.20288 1.01859 0.96356 1.07686 1.20587 0.95529 0.95546 0.97000 1.18614 1.00656 0.94115 1.06305 1.18872 0.92911 0.92112 0.92561 1.21246 0.97829 0.97165 0.92753 1.20846 0.93962 0.99404 1.00496 1.17869 0.94919 0.97377 0.95032 1.21432 0.94383 0.98903 0.99810 1.18316 0.89153 0.97424 0.91468 1.84816 1.27587 1.66323 1.52507 1.20926 0.99786 1.01029 0.94974 1.20900 0.93029 0.98070 0.99065 1.18024 0.95143 0.96357 0.95235 1.21357 0.92981 1.01508 0.99696 0.90516 0.86398 0.89411 0.89346 0.89120 0.84874 0.86260 0.85656 0.76253 0.86132 0.85663 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.00 10.99 55.55 0.61 -18.39 16 2 C 0.08 1.81 5.16 -17.32 -0.09 1.72 16 3 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.05 7.09 -37.93 -0.27 -11.31 16 8 H 0.08 2.02 6.66 -52.48 -0.35 1.67 16 9 C 0.13 3.29 5.55 -106.55 -0.59 2.70 16 10 C -0.16 -3.89 8.62 -39.29 -0.34 -4.22 16 11 C -0.10 -2.26 9.96 -39.97 -0.40 -2.66 16 12 C -0.24 -5.25 10.03 -39.39 -0.40 -5.64 16 13 C -0.07 -1.49 9.48 -39.28 -0.37 -1.86 16 14 C -0.20 -4.51 5.50 -104.22 -0.57 -5.09 16 15 C 0.04 0.74 4.92 -104.92 -0.52 0.23 16 16 C -0.07 -1.43 7.90 -39.57 -0.31 -1.75 16 17 C -0.13 -2.25 9.73 -39.53 -0.38 -2.64 16 18 C -0.05 -0.89 5.75 -106.75 -0.61 -1.50 16 19 C -0.13 -1.90 9.72 -38.99 -0.38 -2.28 16 20 C 0.08 1.13 6.69 -39.17 -0.26 0.87 16 21 O -0.50 -6.07 13.48 -19.25 -0.26 -6.33 16 22 C -0.15 -2.02 9.88 -39.80 -0.39 -2.41 16 23 C -0.09 -1.35 9.75 -39.46 -0.38 -1.74 16 24 C -0.05 -0.82 5.74 -106.82 -0.61 -1.44 16 25 C -0.14 -2.57 9.24 -38.67 -0.36 -2.92 16 26 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 27 H 0.12 2.98 6.25 -52.49 -0.33 2.66 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.09 1.77 8.03 -52.49 -0.42 1.35 16 31 H 0.13 2.79 7.29 -52.49 -0.38 2.41 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.38 2.73 9.06 45.56 0.41 3.14 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.11 8.02 -52.49 -0.42 1.69 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -27.13 318.03 -10.29 -37.42 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.16 Total: 11.67 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: -7.24 Total: -41.94 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.61 Total: -18.39 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.26 Total: -6.33 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.13 -10.29 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205772910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.560 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds