Wall clock time and date at job start Tue Mar 31 2020 08:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47101 * 240.00143 * 3 2 1 5 5 H 1.48502 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47441 * 120.00042 * 3 2 1 7 7 C 1.40044 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99840 * 163.95395 * 7 2 1 9 9 C 1.40823 * 120.00391 * 343.95542 * 7 2 1 10 10 C 1.40770 * 120.33741 * 333.31355 * 9 7 2 11 11 C 1.36399 * 119.99360 * 180.27878 * 10 9 7 12 12 C 1.38975 * 120.70167 * 359.74402 * 11 10 9 13 13 C 1.38017 * 120.68910 * 359.97438 * 12 11 10 14 14 C 1.39260 * 119.97026 * 0.02562 * 13 12 11 15 15 C 1.47743 * 120.33878 * 179.97438 * 14 13 12 16 16 C 1.40714 * 119.74950 * 130.01950 * 15 14 13 17 17 C 1.35657 * 120.82095 * 180.02562 * 16 15 14 18 18 C 1.40827 * 120.03966 * 359.91376 * 17 16 15 19 19 C 1.40326 * 120.93977 * 180.02562 * 18 17 16 20 20 C 1.37709 * 119.58282 * 180.29799 * 19 18 17 21 21 O 1.35845 * 119.62833 * 179.70172 * 20 19 18 22 22 C 1.39867 * 120.73191 * 359.48594 * 20 19 18 23 23 C 1.35943 * 120.89869 * 0.50142 * 22 20 19 24 24 C 1.40741 * 119.87862 * 359.76226 * 23 22 20 25 25 C 1.38676 * 119.75221 * 310.00394 * 15 14 13 26 26 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00402 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.64849 * 179.75853 * 11 10 9 29 29 H 1.08000 * 119.65451 * 180.02562 * 12 11 10 30 30 H 1.07992 * 120.01259 * 179.97438 * 13 12 11 31 31 H 1.07997 * 119.58851 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.97960 * 180.02562 * 17 16 15 33 33 H 1.07990 * 120.21071 * 0.02731 * 19 18 17 34 34 H 0.96702 * 114.00061 * 90.00678 * 21 20 19 35 35 H 1.08003 * 119.55119 * 180.23814 * 22 20 19 36 36 H 1.08000 * 120.06333 * 179.78846 * 23 22 20 37 37 H 1.07998 * 120.25954 * 359.97011 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0081 -1.2128 0.0005 8 1 3.0566 -1.2312 -0.2580 9 6 1.3451 -2.4085 0.3381 10 6 0.2192 -2.3832 1.1827 11 6 -0.4141 -3.5461 1.5097 12 6 0.0365 -4.7634 1.0132 13 6 1.1340 -4.8208 0.1783 14 6 1.8020 -3.6508 -0.1739 15 6 2.9781 -3.7028 -1.0666 16 6 3.0446 -2.8505 -2.1843 17 6 4.1139 -2.8804 -3.0185 18 6 5.1767 -3.7706 -2.7708 19 6 6.2921 -3.8170 -3.6211 20 6 7.3127 -4.7026 -3.3559 21 8 8.3901 -4.7525 -4.1818 22 6 7.2543 -5.5480 -2.2432 23 6 6.1859 -5.5235 -1.4031 24 6 5.1224 -4.6346 -1.6471 25 6 4.0083 -4.5910 -0.7966 26 1 -0.4850 0.8400 0.0004 27 1 -0.1406 -1.4435 1.5750 28 1 -1.2751 -3.5207 2.1613 29 1 -0.4781 -5.6739 1.2827 30 1 1.4750 -5.7727 -0.2009 31 1 2.2343 -2.1640 -2.3804 32 1 4.1510 -2.2199 -3.8722 33 1 6.3477 -3.1653 -4.4804 34 1 9.1066 -4.1539 -3.9302 35 1 8.0673 -6.2326 -2.0511 36 1 6.1533 -6.1847 -0.5497 37 1 3.9536 -5.2429 0.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205772910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:59 Heat of formation + Delta-G solvation = -5.527790 kcal Electronic energy + Delta-G solvation = -21418.928213 eV Core-core repulsion = 18282.434285 eV Total energy + Delta-G solvation = -3136.493927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.29461 -39.71312 -38.59411 -36.10113 -35.59419 -33.70531 -32.04539 -31.35134 -30.46279 -28.81381 -27.06937 -24.50009 -23.88575 -23.07043 -22.40661 -21.68355 -19.47955 -19.18717 -18.00702 -17.57205 -17.04416 -16.76457 -16.19350 -15.72951 -15.60028 -15.32648 -15.04924 -14.56821 -14.37065 -14.23885 -14.03419 -13.82856 -13.45955 -13.29955 -12.95987 -12.82253 -12.69870 -12.34817 -12.21685 -12.03221 -11.87095 -11.40412 -11.31567 -11.21025 -11.06692 -10.77644 -9.57476 -9.32040 -9.12930 -8.70971 -8.44554 -6.30647 -0.39367 0.06314 0.89982 1.06771 1.27011 1.36428 1.46055 1.52570 2.09815 2.18042 2.74111 3.16240 3.36094 3.71003 3.80204 3.99799 4.08494 4.24408 4.34846 4.43410 4.48526 4.50796 4.60695 4.63695 4.86363 4.92696 5.05715 5.09229 5.17073 5.29296 5.33397 5.39256 5.46718 5.49052 5.62340 5.73627 5.82177 5.88043 6.01114 6.12162 6.16462 6.23161 6.37604 6.68157 6.90621 6.92395 7.02959 8.29766 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.005089 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.420987 B = 5500.419071 C = 6887.238050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.472 4.472 8 H 0.074 0.926 9 C 0.101 3.899 10 C -0.185 4.185 11 C -0.107 4.107 12 C -0.242 4.242 13 C -0.078 4.078 14 C -0.198 4.198 15 C 0.001 3.999 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.061 4.061 19 C -0.141 4.141 20 C 0.097 3.903 21 O -0.506 6.506 22 C -0.142 4.142 23 C -0.094 4.094 24 C -0.067 4.067 25 C -0.128 4.128 26 H 0.289 0.711 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -4.739 -3.943 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.501 4.501 8 H 0.092 0.908 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.126 4.126 12 C -0.261 4.261 13 C -0.096 4.096 14 C -0.200 4.200 15 C 0.001 3.999 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.061 4.061 19 C -0.159 4.159 20 C 0.052 3.948 21 O -0.319 6.319 22 C -0.160 4.160 23 C -0.112 4.112 24 C -0.067 4.067 25 C -0.146 4.146 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.268 0.732 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.257 -4.989 -4.259 13.028 hybrid contribution -0.066 1.347 0.373 1.400 sum 11.190 -3.641 -3.885 12.393 Atomic orbital electron populations 1.69839 1.08825 1.30654 1.35061 1.26647 0.95347 1.04051 0.91449 0.85443 0.79050 0.76438 0.80099 1.18344 1.19088 1.18752 1.19588 0.97453 0.91712 1.41344 0.90764 1.17863 0.91212 0.92172 0.88887 1.21045 1.00189 0.97223 1.02018 1.20771 0.99002 0.93183 0.99610 1.20656 1.01588 0.97031 1.06795 1.20913 0.95516 0.96162 0.97048 1.18984 1.01265 0.93932 1.05793 1.18855 0.93457 0.94306 0.93330 1.21036 0.98443 0.97728 0.93993 1.21059 0.93183 0.99429 1.00314 1.18079 0.95372 0.97129 0.95534 1.21587 0.94015 1.00018 1.00273 1.18448 0.89296 0.96073 0.90939 1.84752 1.27770 1.67212 1.52212 1.21285 0.99991 1.00719 0.94019 1.21149 0.92261 0.97647 1.00105 1.18248 0.95623 0.97492 0.95306 1.21467 0.92821 1.00415 0.99942 0.90035 0.88055 0.87292 0.86374 0.86832 0.87395 0.84112 0.83961 0.73220 0.83080 0.83329 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.63 10.99 21.84 0.24 -41.39 16 2 C 0.04 2.01 5.16 85.29 0.44 2.45 16 3 Si 0.97 37.66 29.59 68.60 2.03 39.69 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.47 -24.54 7.09 23.34 0.17 -24.38 16 8 H 0.07 3.85 6.66 -2.91 -0.02 3.83 16 9 C 0.10 5.32 5.55 -21.12 -0.12 5.20 16 10 C -0.19 -9.62 8.62 22.46 0.19 -9.43 16 11 C -0.11 -4.93 9.96 22.02 0.22 -4.71 16 12 C -0.24 -10.34 10.03 22.39 0.22 -10.12 16 13 C -0.08 -3.42 9.48 22.46 0.21 -3.21 16 14 C -0.20 -9.50 5.50 -19.61 -0.11 -9.61 16 15 C 0.00 0.02 4.92 -20.06 -0.10 -0.07 16 16 C -0.09 -3.91 7.90 22.28 0.18 -3.73 16 17 C -0.12 -4.26 9.73 22.31 0.22 -4.05 16 18 C -0.06 -2.00 5.75 -21.24 -0.12 -2.12 16 19 C -0.14 -3.80 9.72 22.65 0.22 -3.58 16 20 C 0.10 2.33 6.69 22.54 0.15 2.48 16 21 O -0.51 -9.84 13.48 -91.81 -1.24 -11.08 16 22 C -0.14 -3.23 9.88 22.13 0.22 -3.01 16 23 C -0.09 -2.43 9.75 22.35 0.22 -2.21 16 24 C -0.07 -2.20 5.74 -21.29 -0.12 -2.32 16 25 C -0.13 -4.77 9.24 22.86 0.21 -4.55 16 26 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 27 H 0.10 5.47 6.25 -2.91 -0.02 5.45 16 28 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 30 H 0.11 4.33 8.03 -2.91 -0.02 4.31 16 31 H 0.11 4.91 7.29 -2.91 -0.02 4.89 16 32 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 33 H 0.14 3.28 8.06 -2.92 -0.02 3.26 16 34 H 0.41 3.81 9.06 -74.06 -0.67 3.14 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.13 4.43 8.02 -2.91 -0.02 4.41 16 Total: -1.00 -60.94 318.03 3.77 -57.17 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.43 Total: 32.57 kcal Atomic # 6 Polarization: -79.27 SS G_CDS: 2.30 Total: -76.97 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.24 Total: -41.39 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.24 Total: -11.08 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -60.94 3.77 -57.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205772910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.644 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds