Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47093 * 239.99778 * 3 2 1 5 5 H 1.48496 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 119.99925 * 3 2 1 7 7 C 1.37878 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53932 * 113.73951 * 81.22935 * 9 7 2 11 11 N 1.48298 * 86.06811 * 138.12885 * 10 9 7 12 12 C 1.46892 * 111.00928 * 222.42365 * 11 10 9 13 13 C 1.50700 * 109.46830 * 269.46990 * 12 11 10 14 14 C 1.36660 * 120.11660 * 102.68938 * 13 12 11 15 15 C 1.38795 * 120.52845 * 180.02562 * 14 13 12 16 16 C 1.37787 * 120.66830 * 359.97438 * 15 14 13 17 17 C 1.39098 * 119.77835 * 0.02562 * 16 15 14 18 18 N 1.37679 * 133.49728 * 179.97438 * 17 16 15 19 19 H 0.96995 * 125.06536 * 0.03972 * 18 17 16 20 20 C 1.36997 * 109.86429 * 180.02562 * 18 17 16 21 21 C 1.34280 * 109.90308 * 0.02562 * 20 18 17 22 22 Cl 1.73602 * 126.49973 * 179.97438 * 21 20 18 23 23 C 1.39591 * 120.11663 * 282.40862 * 13 12 11 24 24 C 1.47964 * 90.75462 * 335.31438 * 11 10 9 25 25 H 0.97003 * 120.00337 * 0.02562 * 1 2 3 26 26 H 1.09003 * 112.94001 * 309.66427 * 9 7 2 27 27 H 1.09002 * 113.76319 * 252.50898 * 10 9 7 28 28 H 1.09001 * 113.75668 * 23.86739 * 10 9 7 29 29 H 1.08997 * 109.47305 * 29.46848 * 12 11 10 30 30 H 1.09005 * 109.47052 * 149.47450 * 12 11 10 31 31 H 1.07998 * 119.73278 * 359.97243 * 14 13 12 32 32 H 1.07999 * 119.66627 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.11416 * 179.97438 * 16 15 14 34 34 H 1.08003 * 125.04780 * 179.97438 * 20 18 17 35 35 H 1.09002 * 113.75493 * 270.37224 * 24 11 10 36 36 H 1.08997 * 113.76411 * 138.99814 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.7558 -2.9287 -1.3922 11 7 1.1880 -4.2954 -1.0119 12 6 1.8747 -4.9600 -2.1275 13 6 0.8695 -5.7172 -2.9565 14 6 0.4399 -5.2061 -4.1488 15 6 -0.4861 -5.8960 -4.9190 16 6 -0.9882 -7.1076 -4.4966 17 6 -0.5648 -7.6466 -3.2862 18 7 -0.8700 -8.8040 -2.6058 19 1 -1.4931 -9.4819 -2.9108 20 6 -0.1621 -8.8556 -1.4341 21 6 0.6070 -7.7613 -1.3161 22 17 1.6755 -7.3871 0.0000 23 6 0.3785 -6.9460 -2.5120 24 6 2.1611 -3.7399 -0.0456 25 1 -0.4851 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7730 27 1 -0.3213 -2.8279 -1.5256 28 1 1.3292 -2.4995 -2.2138 29 1 2.3677 -4.2119 -2.7481 30 1 2.6182 -5.6537 -1.7349 31 1 0.8232 -4.2573 -4.4942 32 1 -0.8163 -5.4789 -5.8589 33 1 -1.7086 -7.6366 -5.1028 34 1 -0.2153 -9.6571 -0.7121 35 1 3.1446 -3.5474 -0.4743 36 1 2.2059 -4.2868 0.8962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209658145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = 86.469371 kcal Electronic energy + Delta-G solvation = -20340.196764 eV Core-core repulsion = 17237.552034 eV Total energy + Delta-G solvation = -3102.644730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20376 -38.62296 -36.86927 -36.08986 -33.00327 -32.07498 -29.90864 -29.12540 -27.86429 -25.38647 -24.76977 -22.84366 -21.82976 -21.45791 -20.23853 -18.43044 -17.55679 -16.53629 -16.24682 -15.38027 -14.89665 -14.69805 -14.52599 -14.22950 -13.89642 -13.81982 -13.44932 -12.87060 -12.56173 -11.93816 -11.82083 -11.77347 -11.56677 -11.32983 -11.22581 -10.98845 -10.82899 -10.63857 -10.35171 -9.96224 -9.63609 -9.37805 -8.99014 -8.87617 -8.37531 -8.17803 -7.71668 -7.48143 -5.98181 -4.02473 1.18252 1.73487 2.39264 2.60105 3.27293 3.33860 3.38856 3.41123 3.98406 4.45816 4.71494 4.80035 5.04116 5.25415 5.28978 5.31695 5.34942 5.61766 5.64088 5.81046 5.87790 6.01044 6.20434 6.27294 6.47778 6.51468 6.59699 6.64075 6.67742 6.77487 6.92355 6.93085 7.20500 7.27949 7.40386 7.42475 7.80986 8.00187 8.22247 8.45595 8.99746 9.61846 11.11108 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.004483 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.038209 B = 6244.044683 C = 7066.753865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.039 3.961 10 C 0.015 3.985 11 N -0.472 5.472 12 C 0.054 3.946 13 C 0.000 4.000 14 C -0.144 4.144 15 C -0.087 4.087 16 C -0.144 4.144 17 C 0.101 3.899 18 N -0.592 5.592 19 H 0.418 0.582 20 C 0.050 3.950 21 C -0.100 4.100 22 Cl -0.032 7.032 23 C -0.083 4.083 24 C 0.003 3.997 25 H 0.261 0.739 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.175 0.825 35 H 0.052 0.948 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -18.190 -7.538 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.114 4.114 11 N -0.194 5.194 12 C -0.074 4.074 13 C -0.001 4.001 14 C -0.164 4.164 15 C -0.106 4.106 16 C -0.165 4.165 17 C -0.005 4.005 18 N -0.197 5.197 19 H 0.255 0.745 20 C -0.077 4.077 21 C -0.135 4.135 22 Cl -0.004 7.004 23 C -0.088 4.088 24 C -0.125 4.125 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.192 0.808 35 H 0.070 0.930 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.829 -18.628 -7.216 20.060 hybrid contribution 0.771 1.136 -0.435 1.440 sum -1.059 -17.492 -7.651 19.121 Atomic orbital electron populations 1.69963 1.05938 1.26679 1.49817 1.24996 0.94778 0.98986 0.94810 0.86717 0.79660 0.83336 0.78613 1.20309 1.21314 1.20234 1.21069 0.92689 0.90471 1.51314 0.92612 1.20287 0.93727 0.90921 0.93048 1.24146 0.99907 0.86509 1.00795 1.68609 1.25669 1.16618 1.08545 1.21629 0.94275 0.97579 0.93931 1.19092 0.95925 0.91597 0.93495 1.20616 0.99917 1.00582 0.95288 1.20791 0.96567 0.93819 0.99431 1.19895 1.04081 0.97829 0.94676 1.18136 0.98991 0.88145 0.95272 1.41545 1.40229 1.19640 1.18277 0.74517 1.21399 0.96407 0.99727 0.90151 1.20819 1.02625 0.97176 0.92838 1.98339 1.62842 1.94312 1.44884 1.18642 1.00262 0.95851 0.94089 1.24004 0.95168 0.97708 0.95668 0.92924 0.92498 0.91680 0.92963 0.93654 0.90680 0.85925 0.85782 0.86411 0.80835 0.93001 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.26 8.77 -34.44 -0.30 -14.57 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 1.00 3.59 -90.84 -0.33 0.68 16 10 C 0.02 0.36 7.53 -2.57 -0.02 0.34 16 11 N -0.47 -9.87 6.10 -239.46 -1.46 -11.33 16 12 C 0.05 0.98 4.27 -4.98 -0.02 0.96 16 13 C 0.00 0.00 5.43 -104.69 -0.57 -0.57 16 14 C -0.14 -2.20 9.60 -39.95 -0.38 -2.58 16 15 C -0.09 -1.11 10.01 -39.54 -0.40 -1.51 16 16 C -0.14 -1.75 10.08 -39.43 -0.40 -2.15 16 17 C 0.10 1.37 7.28 -83.98 -0.61 0.75 16 18 N -0.59 -6.13 6.08 -10.60 -0.06 -6.20 16 19 H 0.42 2.72 8.96 -40.82 -0.37 2.35 16 20 C 0.05 0.56 11.80 -16.64 -0.20 0.37 16 21 C -0.10 -1.48 6.87 -37.64 -0.26 -1.74 16 22 Cl -0.03 -0.49 27.40 -51.86 -1.42 -1.91 16 23 C -0.08 -1.34 6.16 -105.11 -0.65 -1.99 16 24 C 0.00 0.07 7.50 -2.75 -0.02 0.05 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 27 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.05 1.24 7.44 -51.93 -0.39 0.85 16 29 H 0.05 0.82 7.20 -51.93 -0.37 0.45 16 30 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 31 H 0.12 1.78 7.99 -52.49 -0.42 1.36 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -31.02 319.12 -11.06 -42.08 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.39 Total: 1.61 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -4.25 Total: -20.19 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.79 Total: -42.69 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.02 -11.06 -42.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209658145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.552 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds