Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47093 * 239.99778 * 3 2 1 5 5 H 1.48496 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 119.99925 * 3 2 1 7 7 C 1.37878 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53932 * 113.73951 * 81.22935 * 9 7 2 11 11 N 1.48298 * 86.06811 * 138.12885 * 10 9 7 12 12 C 1.46892 * 111.00928 * 222.42365 * 11 10 9 13 13 C 1.50700 * 109.46830 * 269.46990 * 12 11 10 14 14 C 1.36660 * 120.11660 * 102.68938 * 13 12 11 15 15 C 1.38795 * 120.52845 * 180.02562 * 14 13 12 16 16 C 1.37787 * 120.66830 * 359.97438 * 15 14 13 17 17 C 1.39098 * 119.77835 * 0.02562 * 16 15 14 18 18 N 1.37679 * 133.49728 * 179.97438 * 17 16 15 19 19 H 0.96995 * 125.06536 * 0.03972 * 18 17 16 20 20 C 1.36997 * 109.86429 * 180.02562 * 18 17 16 21 21 C 1.34280 * 109.90308 * 0.02562 * 20 18 17 22 22 Cl 1.73602 * 126.49973 * 179.97438 * 21 20 18 23 23 C 1.39591 * 120.11663 * 282.40862 * 13 12 11 24 24 C 1.47964 * 90.75462 * 335.31438 * 11 10 9 25 25 H 0.97003 * 120.00337 * 0.02562 * 1 2 3 26 26 H 1.09003 * 112.94001 * 309.66427 * 9 7 2 27 27 H 1.09002 * 113.76319 * 252.50898 * 10 9 7 28 28 H 1.09001 * 113.75668 * 23.86739 * 10 9 7 29 29 H 1.08997 * 109.47305 * 29.46848 * 12 11 10 30 30 H 1.09005 * 109.47052 * 149.47450 * 12 11 10 31 31 H 1.07998 * 119.73278 * 359.97243 * 14 13 12 32 32 H 1.07999 * 119.66627 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.11416 * 179.97438 * 16 15 14 34 34 H 1.08003 * 125.04780 * 179.97438 * 20 18 17 35 35 H 1.09002 * 113.75493 * 270.37224 * 24 11 10 36 36 H 1.08997 * 113.76411 * 138.99814 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.7558 -2.9287 -1.3922 11 7 1.1880 -4.2954 -1.0119 12 6 1.8747 -4.9600 -2.1275 13 6 0.8695 -5.7172 -2.9565 14 6 0.4399 -5.2061 -4.1488 15 6 -0.4861 -5.8960 -4.9190 16 6 -0.9882 -7.1076 -4.4966 17 6 -0.5648 -7.6466 -3.2862 18 7 -0.8700 -8.8040 -2.6058 19 1 -1.4931 -9.4819 -2.9108 20 6 -0.1621 -8.8556 -1.4341 21 6 0.6070 -7.7613 -1.3161 22 17 1.6755 -7.3871 0.0000 23 6 0.3785 -6.9460 -2.5120 24 6 2.1611 -3.7399 -0.0456 25 1 -0.4851 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7730 27 1 -0.3213 -2.8279 -1.5256 28 1 1.3292 -2.4995 -2.2138 29 1 2.3677 -4.2119 -2.7481 30 1 2.6182 -5.6537 -1.7349 31 1 0.8232 -4.2573 -4.4942 32 1 -0.8163 -5.4789 -5.8589 33 1 -1.7086 -7.6366 -5.1028 34 1 -0.2153 -9.6571 -0.7121 35 1 3.1446 -3.5474 -0.4743 36 1 2.2059 -4.2868 0.8962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209658145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = 66.980357 kcal Electronic energy + Delta-G solvation = -20341.041871 eV Core-core repulsion = 17237.552034 eV Total energy + Delta-G solvation = -3103.489837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19650 -40.36250 -37.96840 -37.16864 -34.82452 -33.55485 -31.12908 -30.21418 -29.31908 -27.15514 -26.63255 -24.36921 -22.86363 -22.71152 -21.29630 -20.36673 -18.78065 -18.33483 -17.33344 -16.71463 -16.51126 -16.11551 -15.92524 -15.61409 -15.39699 -15.11932 -14.68589 -14.04976 -13.83197 -13.77700 -13.39868 -13.12141 -12.88156 -12.83826 -12.78883 -12.47314 -12.38675 -12.20760 -12.05460 -11.53798 -11.20388 -11.09836 -10.91685 -10.51068 -10.24503 -9.49240 -9.19147 -8.51000 -8.12097 -6.24043 0.15380 0.66520 1.40424 1.43234 1.44892 1.52704 1.61741 2.37776 2.43893 2.86686 3.17006 3.43365 3.71044 3.90454 4.09012 4.19830 4.32995 4.38857 4.46504 4.50554 4.61521 4.63449 4.79530 4.82671 4.84739 4.90203 5.02953 5.10726 5.27322 5.47097 5.54586 5.59172 5.63436 5.65208 5.86163 5.88034 6.17523 6.32890 6.45409 6.67457 6.84289 7.44062 8.97076 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.004483 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.038209 B = 6244.044683 C = 7066.753865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.030 3.970 11 N -0.465 5.465 12 C 0.062 3.938 13 C -0.036 4.036 14 C -0.155 4.155 15 C -0.096 4.096 16 C -0.129 4.129 17 C 0.089 3.911 18 N -0.573 5.573 19 H 0.439 0.561 20 C 0.083 3.917 21 C -0.148 4.148 22 Cl -0.050 7.050 23 C -0.111 4.111 24 C 0.019 3.981 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.214 0.786 35 H 0.058 0.942 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -19.885 -8.730 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.099 4.099 11 N -0.187 5.187 12 C -0.066 4.066 13 C -0.037 4.037 14 C -0.174 4.174 15 C -0.115 4.115 16 C -0.150 4.150 17 C -0.018 4.018 18 N -0.179 5.179 19 H 0.281 0.719 20 C -0.046 4.046 21 C -0.182 4.182 22 Cl -0.021 7.021 23 C -0.116 4.116 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.232 -20.358 -8.427 22.146 hybrid contribution 0.824 1.526 -0.092 1.737 sum -1.408 -18.832 -8.519 20.717 Atomic orbital electron populations 1.70098 1.07527 1.27555 1.50822 1.25810 0.95575 1.02590 0.94357 0.85634 0.78376 0.78795 0.78988 1.19414 1.20994 1.19470 1.21394 0.92959 0.91574 1.51193 0.92402 1.20246 0.93972 0.92218 0.93105 1.23817 0.98358 0.88289 0.99411 1.68545 1.25880 1.14841 1.09456 1.21535 0.94810 0.97272 0.92997 1.19034 0.97403 0.92821 0.94484 1.20775 1.00583 1.00746 0.95334 1.21108 0.95978 0.94156 1.00265 1.20333 1.03320 0.97222 0.94087 1.18334 0.98774 0.88996 0.95709 1.41564 1.39757 1.19081 1.17459 0.71933 1.21970 0.93605 0.98930 0.90065 1.21032 1.05058 0.99045 0.93045 1.98318 1.63620 1.94592 1.45578 1.18948 1.01234 0.96050 0.95342 1.23823 0.94865 0.95786 0.96459 0.92904 0.96059 0.93820 0.93402 0.94180 0.90340 0.86393 0.82953 0.82670 0.76928 0.92371 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 13.29 21.45 0.28 -54.93 16 2 C 0.02 0.91 5.46 84.66 0.46 1.37 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -30.03 8.77 25.60 0.22 -29.81 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.02 1.26 3.59 -10.90 -0.04 1.22 16 10 C 0.03 1.50 7.53 86.34 0.65 2.15 16 11 N -0.47 -20.03 6.10 -911.50 -5.56 -25.58 16 12 C 0.06 2.31 4.27 85.56 0.37 2.68 16 13 C -0.04 -1.24 5.43 -19.91 -0.11 -1.35 16 14 C -0.15 -4.70 9.60 22.03 0.21 -4.49 16 15 C -0.10 -2.27 10.01 22.30 0.22 -2.05 16 16 C -0.13 -2.73 10.08 22.37 0.23 -2.51 16 17 C 0.09 2.19 7.28 39.04 0.28 2.47 16 18 N -0.57 -9.79 6.08 -187.44 -1.14 -10.93 16 19 H 0.44 3.72 8.96 -92.71 -0.83 2.89 16 20 C 0.08 1.61 11.80 82.98 0.98 2.59 16 21 C -0.15 -4.20 6.87 23.53 0.16 -4.04 16 22 Cl -0.05 -1.50 27.40 -2.72 -0.07 -1.57 16 23 C -0.11 -3.47 6.16 -20.18 -0.12 -3.60 16 24 C 0.02 0.86 7.50 86.41 0.65 1.51 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 2.29 8.14 -2.39 -0.02 2.28 16 28 H 0.05 2.36 7.44 -2.39 -0.02 2.34 16 29 H 0.04 1.50 7.20 -2.39 -0.02 1.49 16 30 H 0.08 2.83 6.86 -2.38 -0.02 2.81 16 31 H 0.12 3.53 7.99 -2.91 -0.02 3.50 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.06 2.50 7.87 -2.39 -0.02 2.48 16 36 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -69.24 319.12 -0.02 -69.26 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.27 Total: 11.56 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.16 Total: -33.87 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -6.41 Total: -91.44 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -69.24 -0.02 -69.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209658145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.245 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds