Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99752 * 2 1 4 4 H 1.48501 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47172 * 300.00075 * 3 2 1 6 6 H 1.48504 * 109.47396 * 60.00182 * 3 2 1 7 7 C 1.37873 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00622 * 359.97438 * 7 2 1 10 10 C 1.53506 * 114.17509 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93317 * 220.14059 * 10 9 7 12 12 C 1.46901 * 110.99919 * 138.70673 * 11 10 9 13 13 C 1.50701 * 109.46966 * 170.00117 * 12 11 10 14 14 C 1.34236 * 125.03512 * 94.99610 * 13 12 11 15 15 C 1.46491 * 107.00059 * 179.73536 * 14 13 12 16 16 C 1.39638 * 134.00818 * 180.26223 * 15 14 13 17 17 C 1.36723 * 119.75400 * 180.02562 * 16 15 14 18 18 Cl 1.73592 * 119.75169 * 179.97438 * 17 16 15 19 19 C 1.38934 * 120.49470 * 0.02562 * 17 16 15 20 20 C 1.37733 * 120.65667 * 359.97438 * 19 17 16 21 21 C 1.39126 * 119.79942 * 0.02562 * 20 19 17 22 22 N 1.36826 * 125.03160 * 275.18856 * 13 12 11 23 23 H 0.97003 * 125.07007 * 0.02562 * 22 13 12 24 24 C 1.47480 * 87.83501 * 27.01153 * 11 10 9 25 25 H 0.96997 * 120.00511 * 0.02562 * 1 2 3 26 26 H 1.09003 * 113.25569 * 312.95565 * 9 7 2 27 27 H 1.09005 * 113.47228 * 105.37339 * 10 9 7 28 28 H 1.08996 * 113.52976 * 334.91729 * 10 9 7 29 29 H 1.08999 * 109.47309 * 49.99875 * 12 11 10 30 30 H 1.08999 * 109.47079 * 289.99703 * 12 11 10 31 31 H 1.08002 * 126.50168 * 0.02562 * 14 13 12 32 32 H 1.07999 * 120.12907 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.66553 * 179.97438 * 19 17 16 34 34 H 1.08001 * 120.10238 * 180.02562 * 20 19 17 35 35 H 1.08999 * 113.47570 * 87.75868 * 24 11 10 36 36 H 1.09003 * 113.47474 * 218.22297 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.1498 -3.7437 -0.0018 11 7 1.2045 -4.3597 -0.9515 12 6 1.9193 -5.0892 -2.0073 13 6 0.9365 -5.9026 -2.8096 14 6 0.3620 -5.5054 -3.9559 15 6 -0.5119 -6.5952 -4.3971 16 6 -1.3534 -6.7796 -5.4961 17 6 -2.0562 -7.9454 -5.6245 18 17 -3.1029 -8.1743 -6.9903 19 6 -1.9396 -8.9477 -4.6695 20 6 -1.1151 -8.7856 -3.5782 21 6 -0.3908 -7.6072 -3.4279 22 7 0.4948 -7.1537 -2.4755 23 1 0.7673 -7.6489 -1.6871 24 6 0.8509 -2.9987 -1.3958 25 1 -0.4851 0.8400 -0.0004 26 1 0.4453 -2.5309 0.7327 27 1 2.1898 -4.2513 0.9620 28 1 3.1380 -3.5664 -0.4261 29 1 2.6566 -5.7527 -1.5553 30 1 2.4233 -4.3787 -2.6625 31 1 0.5182 -4.5631 -4.4601 32 1 -1.4496 -6.0040 -6.2414 33 1 -2.5013 -9.8631 -4.7840 34 1 -1.0309 -9.5708 -2.8415 35 1 1.4921 -2.6217 -2.1926 36 1 -0.2100 -2.8749 -1.6136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209719411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = 81.232690 kcal Electronic energy + Delta-G solvation = -19534.458809 eV Core-core repulsion = 16431.587000 eV Total energy + Delta-G solvation = -3102.871809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31567 -39.00349 -37.47274 -35.97142 -32.88292 -32.07478 -30.93518 -29.19179 -28.04822 -25.73526 -24.85339 -23.12400 -22.11763 -21.46084 -20.15656 -18.70509 -17.81031 -16.70334 -16.55133 -15.60742 -15.12676 -14.63984 -14.46166 -14.44590 -14.09109 -13.93393 -13.30738 -13.05264 -12.82752 -12.65219 -12.40907 -11.98657 -11.70165 -11.38501 -11.23096 -11.03799 -10.87780 -10.81180 -10.62667 -10.37746 -9.89983 -9.79004 -9.32602 -9.03418 -8.50793 -8.18190 -8.08460 -7.69912 -6.10529 -4.15847 0.99281 1.38827 2.14480 2.71932 3.11664 3.24636 3.33424 3.36132 3.72713 4.35667 4.55961 4.69772 4.89685 5.01820 5.17952 5.20217 5.24242 5.29819 5.48587 5.64750 5.71514 5.86626 5.96341 5.97970 6.15026 6.22068 6.26618 6.35055 6.56329 6.58687 6.60969 6.78689 6.99357 7.09312 7.12455 7.53595 7.65676 7.81573 7.94338 8.29905 8.87760 9.49884 10.98952 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002986 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.342915 B = 9374.659363 C =10055.677202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.006 4.006 11 N -0.482 5.482 12 C 0.071 3.929 13 C 0.121 3.879 14 C -0.200 4.200 15 C -0.093 4.093 16 C -0.060 4.060 17 C -0.062 4.062 18 Cl -0.083 7.083 19 C -0.099 4.099 20 C -0.114 4.114 21 C 0.098 3.902 22 N -0.581 5.581 23 H 0.416 0.584 24 C 0.007 3.993 25 H 0.262 0.738 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 -16.748 -8.953 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.134 4.134 11 N -0.205 5.205 12 C -0.058 4.058 13 C 0.012 3.988 14 C -0.225 4.225 15 C -0.099 4.099 16 C -0.079 4.079 17 C -0.090 4.090 18 Cl -0.055 7.055 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.010 4.010 22 N -0.183 5.183 23 H 0.253 0.747 24 C -0.122 4.122 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.467 -17.169 -8.737 19.320 hybrid contribution 1.030 1.114 -0.192 1.529 sum -0.437 -16.055 -8.930 18.377 Atomic orbital electron populations 1.69972 1.06005 1.26763 1.49383 1.25024 0.94820 0.99230 0.94522 0.86559 0.80135 0.83734 0.77709 1.19719 1.20924 1.20903 1.21043 0.92758 0.90164 1.51669 0.92331 1.20086 0.94200 0.90786 0.92596 1.24053 0.95815 0.97802 0.95744 1.68940 1.26982 1.14848 1.09723 1.21373 0.92927 0.96877 0.94589 1.20319 0.98435 0.84896 0.95148 1.21447 1.02845 0.99614 0.98562 1.19039 1.00371 0.95129 0.95349 1.20094 0.94801 0.95994 0.97054 1.20181 0.99550 0.97093 0.92177 1.98342 1.66017 1.97179 1.43943 1.20557 0.99589 0.98567 0.93215 1.19907 0.98694 0.95616 0.99301 1.18267 0.95474 0.95953 0.91313 1.41746 1.38610 1.15606 1.22340 0.74720 1.24150 1.00608 0.85985 1.01417 0.92827 0.91802 0.91881 0.92528 0.90754 0.91089 0.83481 0.85091 0.85005 0.85503 0.92515 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.26 55.43 0.74 -24.28 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.59 8.83 -34.44 -0.30 -13.90 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 1.02 3.76 -91.25 -0.34 0.67 16 10 C -0.01 -0.11 7.24 -7.55 -0.05 -0.17 16 11 N -0.48 -8.99 6.32 -246.10 -1.55 -10.55 16 12 C 0.07 1.08 5.32 -4.98 -0.03 1.05 16 13 C 0.12 1.77 6.67 -81.77 -0.55 1.22 16 14 C -0.20 -3.00 10.95 -37.67 -0.41 -3.41 16 15 C -0.09 -1.35 6.37 -105.14 -0.67 -2.02 16 16 C -0.06 -0.78 9.81 -39.61 -0.39 -1.17 16 17 C -0.06 -0.75 6.28 -39.87 -0.25 -1.00 16 18 Cl -0.08 -0.91 28.93 -51.86 -1.50 -2.41 16 19 C -0.10 -1.08 9.79 -39.51 -0.39 -1.47 16 20 C -0.11 -1.27 10.07 -39.44 -0.40 -1.66 16 21 C 0.10 1.31 7.28 -83.97 -0.61 0.70 16 22 N -0.58 -7.47 6.07 -6.95 -0.04 -7.52 16 23 H 0.42 4.31 8.96 -40.82 -0.37 3.94 16 24 C 0.01 0.15 7.28 -7.55 -0.05 0.10 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 29 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.07 1.06 7.30 -51.93 -0.38 0.68 16 31 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.06 1.22 7.38 -51.93 -0.38 0.84 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -28.45 322.89 -11.52 -39.97 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.46 Total: 3.74 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -4.54 Total: -19.34 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.86 Total: -42.35 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.45 -11.52 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209719411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.199 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds