Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99752 * 2 1 4 4 H 1.48501 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47172 * 300.00075 * 3 2 1 6 6 H 1.48504 * 109.47396 * 60.00182 * 3 2 1 7 7 C 1.37873 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00622 * 359.97438 * 7 2 1 10 10 C 1.53506 * 114.17509 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93317 * 220.14059 * 10 9 7 12 12 C 1.46901 * 110.99919 * 138.70673 * 11 10 9 13 13 C 1.50701 * 109.46966 * 170.00117 * 12 11 10 14 14 C 1.34236 * 125.03512 * 94.99610 * 13 12 11 15 15 C 1.46491 * 107.00059 * 179.73536 * 14 13 12 16 16 C 1.39638 * 134.00818 * 180.26223 * 15 14 13 17 17 C 1.36723 * 119.75400 * 180.02562 * 16 15 14 18 18 Cl 1.73592 * 119.75169 * 179.97438 * 17 16 15 19 19 C 1.38934 * 120.49470 * 0.02562 * 17 16 15 20 20 C 1.37733 * 120.65667 * 359.97438 * 19 17 16 21 21 C 1.39126 * 119.79942 * 0.02562 * 20 19 17 22 22 N 1.36826 * 125.03160 * 275.18856 * 13 12 11 23 23 H 0.97003 * 125.07007 * 0.02562 * 22 13 12 24 24 C 1.47480 * 87.83501 * 27.01153 * 11 10 9 25 25 H 0.96997 * 120.00511 * 0.02562 * 1 2 3 26 26 H 1.09003 * 113.25569 * 312.95565 * 9 7 2 27 27 H 1.09005 * 113.47228 * 105.37339 * 10 9 7 28 28 H 1.08996 * 113.52976 * 334.91729 * 10 9 7 29 29 H 1.08999 * 109.47309 * 49.99875 * 12 11 10 30 30 H 1.08999 * 109.47079 * 289.99703 * 12 11 10 31 31 H 1.08002 * 126.50168 * 0.02562 * 14 13 12 32 32 H 1.07999 * 120.12907 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.66553 * 179.97438 * 19 17 16 34 34 H 1.08001 * 120.10238 * 180.02562 * 20 19 17 35 35 H 1.08999 * 113.47570 * 87.75868 * 24 11 10 36 36 H 1.09003 * 113.47474 * 218.22297 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.1498 -3.7437 -0.0018 11 7 1.2045 -4.3597 -0.9515 12 6 1.9193 -5.0892 -2.0073 13 6 0.9365 -5.9026 -2.8096 14 6 0.3620 -5.5054 -3.9559 15 6 -0.5119 -6.5952 -4.3971 16 6 -1.3534 -6.7796 -5.4961 17 6 -2.0562 -7.9454 -5.6245 18 17 -3.1029 -8.1743 -6.9903 19 6 -1.9396 -8.9477 -4.6695 20 6 -1.1151 -8.7856 -3.5782 21 6 -0.3908 -7.6072 -3.4279 22 7 0.4948 -7.1537 -2.4755 23 1 0.7673 -7.6489 -1.6871 24 6 0.8509 -2.9987 -1.3958 25 1 -0.4851 0.8400 -0.0004 26 1 0.4453 -2.5309 0.7327 27 1 2.1898 -4.2513 0.9620 28 1 3.1380 -3.5664 -0.4261 29 1 2.6566 -5.7527 -1.5553 30 1 2.4233 -4.3787 -2.6625 31 1 0.5182 -4.5631 -4.4601 32 1 -1.4496 -6.0040 -6.2414 33 1 -2.5013 -9.8631 -4.7840 34 1 -1.0309 -9.5708 -2.8415 35 1 1.4921 -2.6217 -2.1926 36 1 -0.2100 -2.8749 -1.6136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209719411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = 64.426837 kcal Electronic energy + Delta-G solvation = -19535.187565 eV Core-core repulsion = 16431.587000 eV Total energy + Delta-G solvation = -3103.600566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33729 -40.58275 -38.43804 -36.89890 -34.79201 -33.13359 -32.27369 -30.17267 -29.44290 -27.35025 -26.51872 -24.60565 -23.17152 -22.51357 -21.26650 -20.46697 -18.90972 -18.49712 -17.53210 -16.80011 -16.68519 -16.19305 -15.96466 -15.56540 -15.25834 -15.04208 -14.60353 -14.26110 -13.96742 -13.87435 -13.68520 -13.40163 -13.21182 -12.94823 -12.86196 -12.35837 -12.29924 -12.06377 -11.82992 -11.70826 -11.61462 -11.17165 -10.89360 -10.74727 -10.50481 -9.76630 -9.09459 -8.71955 -8.14558 -6.25983 0.03106 0.43230 1.22992 1.42532 1.44884 1.55807 1.62299 2.13310 2.43238 2.76137 3.15229 3.33572 3.65525 3.76078 4.00291 4.08973 4.23438 4.26672 4.40500 4.42124 4.52173 4.58633 4.64821 4.74311 4.84886 4.91636 4.96857 4.99677 5.21746 5.26124 5.32245 5.40109 5.63660 5.65224 5.73855 5.85508 6.05569 6.27690 6.33513 6.62148 6.84727 7.43181 8.95285 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002986 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.342915 B = 9374.659363 C =10055.677202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.019 3.981 10 C 0.012 3.988 11 N -0.479 5.479 12 C 0.075 3.925 13 C 0.111 3.889 14 C -0.219 4.219 15 C -0.120 4.120 16 C -0.075 4.075 17 C -0.067 4.067 18 Cl -0.075 7.075 19 C -0.096 4.096 20 C -0.110 4.110 21 C 0.088 3.912 22 N -0.573 5.573 23 H 0.428 0.572 24 C 0.020 3.980 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.058 0.942 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -18.507 -9.141 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.116 4.116 11 N -0.202 5.202 12 C -0.054 4.054 13 C 0.002 3.998 14 C -0.245 4.245 15 C -0.125 4.125 16 C -0.094 4.094 17 C -0.094 4.094 18 Cl -0.046 7.046 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.020 4.020 22 N -0.177 5.177 23 H 0.267 0.733 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.076 0.924 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.489 -18.956 -8.916 20.954 hybrid contribution 0.665 1.558 -0.190 1.704 sum 0.175 -17.398 -9.106 19.638 Atomic orbital electron populations 1.70105 1.07613 1.27479 1.50997 1.25840 0.95549 1.02782 0.94432 0.85526 0.79300 0.79472 0.77479 1.18525 1.20814 1.20823 1.21414 0.93127 0.91277 1.50709 0.91869 1.20036 0.94567 0.92329 0.93042 1.23862 0.95559 0.95307 0.96856 1.68822 1.27655 1.13098 1.10600 1.21371 0.93237 0.97017 0.93745 1.20189 0.98786 0.85721 0.95116 1.21609 1.03583 0.99994 0.99279 1.19229 1.01217 0.95575 0.96525 1.20209 0.95274 0.96813 0.97134 1.20365 0.99296 0.97063 0.92713 1.98345 1.65631 1.97096 1.43557 1.20928 0.99184 0.99058 0.92446 1.20282 0.97505 0.95418 0.99809 1.18566 0.95816 0.96547 0.91099 1.41675 1.38281 1.15039 1.22676 0.73307 1.23850 0.98911 0.88108 1.00055 0.92945 0.95522 0.90391 0.91096 0.87900 0.90880 0.83892 0.84837 0.82312 0.82352 0.92431 0.94326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.72 13.26 21.45 0.28 -53.44 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -27.81 8.83 25.60 0.23 -27.59 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.02 0.95 3.76 -11.20 -0.04 0.91 16 10 C 0.01 0.47 7.24 83.57 0.61 1.08 16 11 N -0.48 -17.50 6.32 -932.52 -5.89 -23.39 16 12 C 0.08 2.14 5.32 85.56 0.46 2.59 16 13 C 0.11 3.16 6.67 40.87 0.27 3.44 16 14 C -0.22 -6.64 10.95 23.51 0.26 -6.38 16 15 C -0.12 -3.44 6.37 -20.20 -0.13 -3.57 16 16 C -0.08 -1.93 9.81 22.25 0.22 -1.72 16 17 C -0.07 -1.51 6.28 22.08 0.14 -1.37 16 18 Cl -0.07 -1.53 28.93 -2.72 -0.08 -1.61 16 19 C -0.10 -1.84 9.79 22.32 0.22 -1.62 16 20 C -0.11 -2.12 10.07 22.36 0.23 -1.90 16 21 C 0.09 2.21 7.28 39.02 0.28 2.50 16 22 N -0.57 -13.80 6.07 -175.89 -1.07 -14.87 16 23 H 0.43 7.85 8.96 -92.71 -0.83 7.02 16 24 C 0.02 0.89 7.28 83.57 0.61 1.50 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 27 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 29 H 0.10 2.37 8.08 -2.39 -0.02 2.35 16 30 H 0.07 2.09 7.30 -2.39 -0.02 2.07 16 31 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.06 2.51 7.38 -2.39 -0.02 2.49 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.03 322.89 -0.65 -62.68 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.27 Total: 17.18 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.80 Total: -30.96 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -6.67 Total: -91.70 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -62.03 -0.65 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209719411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.106 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds