Wall clock time and date at job start Tue Mar 31 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86799 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47025 * 240.00248 * 3 2 1 5 5 H 1.48498 * 109.46964 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47453 * 120.00096 * 3 2 1 7 7 C 1.39821 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99819 * 192.76994 * 7 2 1 9 9 C 1.41100 * 120.00259 * 12.76771 * 7 2 1 10 10 C 1.40899 * 120.15303 * 207.42721 * 9 7 2 11 11 C 1.36303 * 119.84297 * 180.02562 * 10 9 7 12 12 C 1.39624 * 120.15363 * 0.02562 * 11 10 9 13 13 N 1.38734 * 119.84831 * 179.97438 * 12 11 10 14 14 C 1.39781 * 120.00120 * 147.49866 * 13 12 11 15 15 C 1.38954 * 119.98993 * 335.66466 * 14 13 12 16 16 C 1.38257 * 120.00302 * 179.97438 * 15 14 13 17 17 F 1.35095 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.39014 * 119.99079 * 359.97438 * 16 15 14 19 19 N 1.40223 * 120.00146 * 179.97438 * 18 16 15 20 20 C 1.39005 * 119.98966 * 0.02562 * 18 16 15 21 21 F 1.35104 * 120.00395 * 180.02562 * 20 18 16 22 22 C 1.38247 * 119.99298 * 359.97438 * 20 18 16 23 23 C 1.39638 * 120.30685 * 0.27338 * 12 11 10 24 24 C 1.36295 * 120.15494 * 359.44469 * 23 12 11 25 25 H 0.97000 * 120.00405 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.08448 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.91974 * 179.97438 * 11 10 9 28 28 H 0.96998 * 119.99793 * 327.50628 * 13 12 11 29 29 H 1.07993 * 120.00038 * 359.69926 * 15 14 13 30 30 H 0.97005 * 119.99792 * 180.02562 * 19 18 16 31 31 H 0.96999 * 120.00093 * 0.02763 * 19 18 16 32 32 H 1.08004 * 119.99776 * 179.97438 * 22 20 18 33 33 H 1.08004 * 119.91933 * 179.72460 * 23 12 11 34 34 H 1.07991 * 120.08192 * 180.27434 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6963 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0970 1.6964 1.2124 7 6 2.0083 -1.2109 -0.0005 8 1 3.0683 -1.2226 0.2062 9 6 1.3290 -2.4177 -0.2711 10 6 1.8058 -3.6326 0.2597 11 6 1.1449 -4.7947 -0.0062 12 6 -0.0016 -4.7830 -0.8029 13 7 -0.6690 -5.9696 -1.0698 14 6 -2.0572 -5.9692 -1.2335 15 6 -2.8241 -4.9630 -0.6588 16 6 -4.1971 -4.9620 -0.8210 17 9 -4.9426 -3.9840 -0.2618 18 6 -4.8103 -5.9675 -1.5595 19 7 -6.2029 -5.9670 -1.7237 20 6 -4.0428 -6.9739 -2.1343 21 9 -4.6384 -7.9510 -2.8525 22 6 -2.6699 -6.9744 -1.9718 23 6 -0.4762 -3.5834 -1.3373 24 6 0.1715 -2.4133 -1.0748 25 1 -0.4851 0.8400 0.0004 26 1 2.6928 -3.6432 0.8758 27 1 1.5095 -5.7267 0.3997 28 1 -0.1723 -6.7996 -1.1428 29 1 -2.3480 -4.1841 -0.0817 30 1 -6.6307 -6.6689 -2.2387 31 1 -6.7383 -5.2649 -1.3222 32 1 -2.0736 -7.7566 -2.4180 33 1 -1.3612 -3.5823 -1.9564 34 1 -0.1990 -1.4857 -1.4851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210908575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:01 Heat of formation + Delta-G solvation = -41.145569 kcal Electronic energy + Delta-G solvation = -21817.989110 eV Core-core repulsion = 18158.013901 eV Total energy + Delta-G solvation = -3659.975209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.78727 -48.64466 -39.40393 -37.69388 -35.63220 -33.82012 -32.59019 -30.26751 -29.51222 -29.09608 -27.15027 -24.70533 -22.92525 -22.01570 -21.09487 -20.34141 -18.02931 -17.77893 -17.39849 -16.86599 -16.35328 -15.82234 -15.29833 -15.27374 -15.03397 -15.01614 -14.95088 -14.51285 -14.00007 -13.44545 -12.85771 -12.54568 -12.31076 -12.13542 -12.03088 -11.88886 -11.70131 -11.48649 -11.13290 -11.03793 -10.89389 -10.52118 -9.90669 -9.69227 -9.36170 -8.84337 -8.52214 -7.66935 -7.45585 -6.77481 -6.45444 -4.30767 1.23167 1.54761 2.72377 2.96508 3.05833 3.07985 3.15198 3.70669 3.78433 3.87826 3.91796 4.27137 4.60439 4.71731 4.92878 5.37430 5.57166 5.62070 5.88344 6.07175 6.09301 6.15809 6.25416 6.44655 6.72701 6.82436 6.94583 7.01037 7.17875 7.34618 7.45477 7.51275 7.69633 7.72195 7.96469 8.08299 8.25594 8.37763 8.57330 8.84378 8.91629 10.18142 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.003967 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.238779 B = 7055.863924 C = 7950.355626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.115 4.115 12 C 0.021 3.979 13 N -0.666 5.666 14 C 0.217 3.783 15 C -0.170 4.170 16 C 0.089 3.911 17 F -0.136 7.136 18 C 0.097 3.903 19 N -0.880 5.880 20 C 0.081 3.919 21 F -0.141 7.141 22 C -0.195 4.195 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.281 0.719 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.398 0.602 29 H 0.152 0.848 30 H 0.399 0.601 31 H 0.401 0.599 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -9.031 -2.829 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.136 4.136 12 C -0.073 4.073 13 N -0.287 5.287 14 C 0.112 3.888 15 C -0.193 4.193 16 C 0.064 3.936 17 F -0.115 7.115 18 C -0.007 4.007 19 N -0.424 5.424 20 C 0.057 3.943 21 F -0.120 7.120 22 C -0.219 4.219 23 C -0.144 4.144 24 C -0.159 4.159 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.233 0.767 29 H 0.170 0.830 30 H 0.228 0.772 31 H 0.229 0.771 32 H 0.154 0.846 33 H 0.112 0.888 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.500 -8.700 -2.779 11.818 hybrid contribution -0.105 0.464 -0.028 0.477 sum -7.605 -8.236 -2.807 11.556 Atomic orbital electron populations 1.69813 1.07400 1.29296 1.35921 1.25883 0.94824 1.01252 0.92429 0.86332 0.80031 0.80247 0.79903 1.18890 1.20337 1.19054 1.19480 0.96455 0.90777 1.42189 0.90514 1.17639 0.91618 0.92118 0.89035 1.20611 1.03003 0.92799 1.06066 1.20067 0.97053 0.97289 0.99183 1.17159 0.98046 0.85203 1.06881 1.41505 1.02021 1.08830 1.76328 1.16965 0.84501 0.93624 0.93669 1.20924 0.90826 1.03239 1.04328 1.16510 0.88671 0.88044 1.00339 1.91454 1.76313 1.60239 1.83450 1.17348 0.85489 0.96042 1.01849 1.42003 1.02811 1.34018 1.63555 1.16321 0.90065 0.88369 0.99547 1.91423 1.84051 1.60449 1.76051 1.20377 0.92459 1.03651 1.05408 1.20409 1.00502 0.92415 1.01094 1.21016 0.98158 0.96439 1.00277 0.90787 0.88621 0.89106 0.76684 0.83015 0.77232 0.77065 0.84635 0.88769 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.21 10.85 55.54 0.60 -19.60 16 2 C 0.07 1.79 5.22 -17.35 -0.09 1.70 16 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.77 9.04 -37.90 -0.34 -12.11 16 8 H 0.08 1.88 7.88 -52.49 -0.41 1.47 16 9 C 0.10 2.51 5.56 -106.79 -0.59 1.92 16 10 C -0.20 -4.73 9.74 -39.27 -0.38 -5.11 16 11 C -0.12 -2.39 9.89 -39.76 -0.39 -2.79 16 12 C 0.02 0.43 5.90 -83.70 -0.49 -0.07 16 13 N -0.67 -11.09 5.42 -8.27 -0.04 -11.13 16 14 C 0.22 3.52 6.06 -83.70 -0.51 3.01 16 15 C -0.17 -2.96 7.82 -39.31 -0.31 -3.26 16 16 C 0.09 1.43 7.30 -39.29 -0.29 1.14 16 17 F -0.14 -2.22 16.63 2.25 0.04 -2.19 16 18 C 0.10 1.40 6.77 -83.45 -0.57 0.83 16 19 N -0.88 -10.02 9.11 32.56 0.30 -9.72 16 20 C 0.08 1.15 7.30 -39.29 -0.29 0.87 16 21 F -0.14 -1.89 16.63 2.25 0.04 -1.85 16 22 C -0.19 -2.75 9.91 -39.31 -0.39 -3.14 16 23 C -0.12 -2.75 7.63 -39.76 -0.30 -3.06 16 24 C -0.14 -3.46 8.61 -39.27 -0.34 -3.80 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 27 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.40 5.53 8.88 -40.82 -0.36 5.17 16 29 H 0.15 2.99 6.27 -52.49 -0.33 2.67 16 30 H 0.40 3.83 8.32 -40.82 -0.34 3.49 16 31 H 0.40 4.09 8.32 -40.82 -0.34 3.75 16 32 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.09 2.01 6.58 -52.48 -0.35 1.66 16 34 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -26.33 301.22 -7.70 -34.03 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -2.86 Total: 16.50 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -5.28 Total: -23.86 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.85 Total: -40.46 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.33 -7.70 -34.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210908575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.118 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds