Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86799 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47025 * 240.00248 * 3 2 1 5 5 H 1.48498 * 109.46964 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47453 * 120.00096 * 3 2 1 7 7 C 1.39821 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99819 * 192.76994 * 7 2 1 9 9 C 1.41100 * 120.00259 * 12.76771 * 7 2 1 10 10 C 1.40899 * 120.15303 * 207.42721 * 9 7 2 11 11 C 1.36303 * 119.84297 * 180.02562 * 10 9 7 12 12 C 1.39624 * 120.15363 * 0.02562 * 11 10 9 13 13 N 1.38734 * 119.84831 * 179.97438 * 12 11 10 14 14 C 1.39781 * 120.00120 * 147.49866 * 13 12 11 15 15 C 1.38954 * 119.98993 * 335.66466 * 14 13 12 16 16 C 1.38257 * 120.00302 * 179.97438 * 15 14 13 17 17 F 1.35095 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.39014 * 119.99079 * 359.97438 * 16 15 14 19 19 N 1.40223 * 120.00146 * 179.97438 * 18 16 15 20 20 C 1.39005 * 119.98966 * 0.02562 * 18 16 15 21 21 F 1.35104 * 120.00395 * 180.02562 * 20 18 16 22 22 C 1.38247 * 119.99298 * 359.97438 * 20 18 16 23 23 C 1.39638 * 120.30685 * 0.27338 * 12 11 10 24 24 C 1.36295 * 120.15494 * 359.44469 * 23 12 11 25 25 H 0.97000 * 120.00405 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.08448 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.91974 * 179.97438 * 11 10 9 28 28 H 0.96998 * 119.99793 * 327.50628 * 13 12 11 29 29 H 1.07993 * 120.00038 * 359.69926 * 15 14 13 30 30 H 0.97005 * 119.99792 * 180.02562 * 19 18 16 31 31 H 0.96999 * 120.00093 * 0.02763 * 19 18 16 32 32 H 1.08004 * 119.99776 * 179.97438 * 22 20 18 33 33 H 1.08004 * 119.91933 * 179.72460 * 23 12 11 34 34 H 1.07991 * 120.08192 * 180.27434 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6963 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0970 1.6964 1.2124 7 6 2.0083 -1.2109 -0.0005 8 1 3.0683 -1.2226 0.2062 9 6 1.3290 -2.4177 -0.2711 10 6 1.8058 -3.6326 0.2597 11 6 1.1449 -4.7947 -0.0062 12 6 -0.0016 -4.7830 -0.8029 13 7 -0.6690 -5.9696 -1.0698 14 6 -2.0572 -5.9692 -1.2335 15 6 -2.8241 -4.9630 -0.6588 16 6 -4.1971 -4.9620 -0.8210 17 9 -4.9426 -3.9840 -0.2618 18 6 -4.8103 -5.9675 -1.5595 19 7 -6.2029 -5.9670 -1.7237 20 6 -4.0428 -6.9739 -2.1343 21 9 -4.6384 -7.9510 -2.8525 22 6 -2.6699 -6.9744 -1.9718 23 6 -0.4762 -3.5834 -1.3373 24 6 0.1715 -2.4133 -1.0748 25 1 -0.4851 0.8400 0.0004 26 1 2.6928 -3.6432 0.8758 27 1 1.5095 -5.7267 0.3997 28 1 -0.1723 -6.7996 -1.1428 29 1 -2.3480 -4.1841 -0.0817 30 1 -6.6307 -6.6689 -2.2387 31 1 -6.7383 -5.2649 -1.3222 32 1 -2.0736 -7.7566 -2.4180 33 1 -1.3612 -3.5823 -1.9564 34 1 -0.1990 -1.4857 -1.4851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210908575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = -55.407861 kcal Electronic energy + Delta-G solvation = -21818.607569 eV Core-core repulsion = 18158.013901 eV Total energy + Delta-G solvation = -3660.593668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 9.67 seconds Orbital eigenvalues (eV) -49.92484 -49.89150 -40.79503 -39.24412 -37.04695 -35.36974 -34.04048 -31.73051 -31.11890 -30.69936 -28.51409 -26.39010 -24.21296 -23.40289 -22.79199 -21.94209 -19.31807 -19.16897 -19.04722 -18.02625 -17.77905 -17.02493 -16.93872 -16.63027 -16.31392 -16.23211 -16.12220 -15.81933 -15.58129 -15.10380 -14.54743 -13.99781 -13.88557 -13.64023 -13.53433 -13.28439 -13.10957 -12.80136 -12.72690 -12.64820 -12.38336 -12.18118 -11.63708 -11.40243 -11.09733 -10.35695 -9.76954 -9.44414 -8.97187 -8.56130 -7.86277 -6.16908 -0.00158 0.28435 1.03420 1.16050 1.40490 1.51396 1.54904 2.23945 2.41459 2.52834 2.80741 2.82877 3.03378 3.50087 3.73595 3.77269 4.13847 4.31036 4.41687 4.47601 4.72917 4.82306 4.95759 5.04304 5.14287 5.18235 5.20714 5.38998 5.54849 5.70725 5.76160 5.95795 6.12333 6.30615 6.36732 6.56985 6.76134 6.83910 6.98463 7.00629 7.14879 8.40683 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.003967 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.238779 B = 7055.863924 C = 7950.355626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.063 3.937 10 C -0.212 4.212 11 C -0.118 4.118 12 C 0.049 3.951 13 N -0.662 5.662 14 C 0.202 3.798 15 C -0.183 4.183 16 C 0.070 3.930 17 F -0.142 7.142 18 C 0.112 3.888 19 N -0.867 5.867 20 C 0.080 3.920 21 F -0.131 7.131 22 C -0.169 4.169 23 C -0.129 4.129 24 C -0.160 4.160 25 H 0.284 0.716 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.416 0.584 29 H 0.121 0.879 30 H 0.411 0.589 31 H 0.408 0.592 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -11.231 -3.507 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.061 3.939 10 C -0.232 4.232 11 C -0.139 4.139 12 C -0.046 4.046 13 N -0.286 5.286 14 C 0.098 3.902 15 C -0.206 4.206 16 C 0.045 3.955 17 F -0.121 7.121 18 C 0.006 3.994 19 N -0.411 5.411 20 C 0.055 3.945 21 F -0.110 7.110 22 C -0.192 4.192 23 C -0.150 4.150 24 C -0.180 4.180 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.145 0.855 28 H 0.254 0.746 29 H 0.139 0.861 30 H 0.242 0.758 31 H 0.238 0.762 32 H 0.183 0.817 33 H 0.116 0.884 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.194 -10.958 -3.473 14.117 hybrid contribution -0.136 0.872 0.122 0.890 sum -8.329 -10.087 -3.352 13.504 Atomic orbital electron populations 1.69897 1.08802 1.30172 1.37436 1.26683 0.95520 1.04342 0.91585 0.85277 0.78672 0.75937 0.79971 1.18523 1.19614 1.18434 1.19721 0.96656 0.91992 1.44478 0.90621 1.17942 0.92470 0.93277 0.90259 1.20831 1.03442 0.92965 1.05947 1.20375 0.96808 0.97974 0.98742 1.17182 0.97217 0.85907 1.04295 1.41296 1.02310 1.08134 1.76827 1.16965 0.84083 0.94320 0.94814 1.20776 0.91686 1.03199 1.04983 1.16532 0.88372 0.88864 1.01691 1.91433 1.76310 1.60662 1.83707 1.17398 0.86728 0.95061 1.00246 1.42056 1.01733 1.34427 1.62925 1.16318 0.90148 0.88440 0.99568 1.91457 1.83873 1.59949 1.75736 1.20591 0.92613 1.02842 1.03193 1.20455 1.00550 0.92625 1.01389 1.20908 0.99045 0.96591 1.01446 0.90512 0.87794 0.85498 0.74609 0.86115 0.75827 0.76229 0.81656 0.88353 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.48 10.85 21.81 0.24 -44.25 16 2 C 0.03 1.61 5.22 85.21 0.44 2.06 16 3 Si 0.98 38.66 29.58 68.60 2.03 40.69 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.50 -26.71 9.04 23.36 0.21 -26.49 16 8 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 9 C 0.06 3.35 5.56 -21.27 -0.12 3.23 16 10 C -0.21 -9.89 9.74 22.47 0.22 -9.67 16 11 C -0.12 -4.76 9.89 22.15 0.22 -4.54 16 12 C 0.05 1.96 5.90 38.72 0.23 2.19 16 13 N -0.66 -20.45 5.42 -180.09 -0.98 -21.43 16 14 C 0.20 6.10 6.06 38.22 0.23 6.33 16 15 C -0.18 -6.31 7.82 22.45 0.18 -6.13 16 16 C 0.07 2.20 7.30 22.46 0.16 2.36 16 17 F -0.14 -4.65 16.63 44.97 0.75 -3.90 16 18 C 0.11 2.94 6.77 38.17 0.26 3.20 16 19 N -0.87 -17.34 9.11 -50.91 -0.46 -17.80 16 20 C 0.08 1.99 7.30 22.46 0.16 2.15 16 21 F -0.13 -2.98 16.63 44.97 0.75 -2.23 16 22 C -0.17 -4.15 9.91 22.44 0.22 -3.93 16 23 C -0.13 -5.89 7.63 22.15 0.17 -5.72 16 24 C -0.16 -8.35 8.61 22.47 0.19 -8.16 16 25 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 26 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.42 10.04 8.88 -92.71 -0.82 9.22 16 29 H 0.12 4.94 6.27 -2.91 -0.02 4.92 16 30 H 0.41 6.51 8.32 -92.70 -0.77 5.74 16 31 H 0.41 7.37 8.32 -92.71 -0.77 6.60 16 32 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.10 4.30 6.58 -2.91 -0.02 4.28 16 34 H 0.10 5.60 6.18 -2.91 -0.02 5.58 16 Total: -1.00 -59.00 301.22 3.94 -55.06 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -1.16 Total: 36.99 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 2.78 Total: -43.12 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.20 Total: -83.48 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.50 Total: -6.14 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -59.00 3.94 -55.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210908575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.352 kcal (2) G-P(sol) polarization free energy of solvation -58.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.67 seconds